Wall clock time and date at job start Tue Mar 31 2020 10:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.92580 * 2 1 4 4 C 1.38342 * 120.29406 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14131 * 359.74682 * 4 3 2 6 6 C 1.50698 * 120.07539 * 180.25278 * 5 4 3 7 7 C 1.39562 * 119.85215 * 0.48388 * 5 4 3 8 8 C 1.47842 * 120.14537 * 179.78983 * 7 5 4 9 9 O 1.21557 * 120.00008 * 307.90641 * 8 7 5 10 10 N 1.34783 * 120.00266 * 127.89999 * 8 7 5 11 11 C 1.47161 * 120.71206 * 184.03517 * 10 8 7 12 12 C 1.53889 * 108.02892 * 132.75101 * 11 10 8 13 13 H 1.08997 * 112.57961 * 182.22666 * 12 11 10 14 14 C 1.54144 * 107.70948 * 306.32524 * 12 11 10 15 15 C 1.54279 * 104.88978 * 89.41130 * 14 12 11 16 16 C 1.54554 * 104.84897 * 359.80633 * 15 14 12 17 17 H 1.09002 * 112.18099 * 146.40840 * 16 15 14 18 18 C 1.49240 * 120.76333 * 4.11328 * 10 8 7 19 19 N 1.48310 * 107.20837 * 58.36063 * 12 11 10 20 20 C 1.36933 * 128.07632 * 106.70465 * 19 12 11 21 21 H 1.07991 * 120.00105 * 159.86249 * 20 19 12 22 22 C 1.38817 * 119.99762 * 339.85553 * 20 19 12 23 23 N 1.31620 * 119.99953 * 353.39696 * 22 20 19 24 24 Si 1.86796 * 119.99704 * 173.39787 * 22 20 19 25 25 H 1.48508 * 109.47052 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47326 * 299.99872 * 24 22 20 27 27 H 1.48497 * 109.47519 * 60.00315 * 24 22 20 28 28 C 1.37936 * 119.92721 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47252 * 270.02194 * 1 2 3 30 30 H 1.09005 * 109.47495 * 30.01913 * 1 2 3 31 31 H 1.08999 * 109.47335 * 150.01990 * 1 2 3 32 32 H 1.07996 * 119.85697 * 0.02746 * 3 2 1 33 33 H 1.07994 * 119.93051 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47036 * 274.54910 * 6 5 4 35 35 H 1.09001 * 109.47376 * 34.54912 * 6 5 4 36 36 H 1.08997 * 109.47373 * 154.54826 * 6 5 4 37 37 H 1.09007 * 109.75070 * 13.12174 * 11 10 8 38 38 H 1.08992 * 109.79093 * 252.40888 * 11 10 8 39 39 H 1.09000 * 110.50270 * 330.47427 * 14 12 11 40 40 H 1.09001 * 110.27256 * 208.23352 * 14 12 11 41 41 H 1.08994 * 110.36048 * 240.96754 * 15 14 12 42 42 H 1.08997 * 110.36352 * 118.64451 * 15 14 12 43 43 H 1.09003 * 110.51644 * 107.82269 * 18 10 8 44 44 H 1.08998 * 109.75124 * 346.59931 * 18 10 8 45 45 H 0.97005 * 119.99650 * 179.97438 * 23 22 20 46 46 H 1.07993 * 120.07284 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0195 0.0063 6 6 5.7882 0.0309 0.0127 7 6 3.5911 -1.1936 0.0015 8 6 4.3352 -2.4711 0.0030 9 8 5.2037 -2.6696 -0.8240 10 7 4.0507 -3.4157 0.9213 11 6 4.8398 -4.6557 0.9934 12 6 5.2096 -4.9000 2.4671 13 1 5.8315 -5.7850 2.6014 14 6 5.8941 -3.6243 2.9964 15 6 4.7428 -2.7532 3.5404 16 6 3.4638 -3.5825 3.2847 17 1 2.7140 -3.4324 4.0615 18 6 2.9278 -3.2284 1.8864 19 7 3.9404 -4.9859 3.2295 20 6 3.3495 -6.1000 3.7631 21 1 2.6206 -5.9985 4.5535 22 6 3.6873 -7.3598 3.2879 23 7 4.4751 -7.4785 2.2402 24 14 3.0239 -8.8864 4.1355 25 1 3.5291 -10.0976 3.4403 26 1 3.4760 -8.9034 5.5499 27 1 1.5397 -8.8722 4.0904 28 6 2.1952 -1.1954 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6538 2.1325 0.0004 33 1 4.1136 2.1476 0.0001 34 1 6.1552 0.1127 -1.0104 35 1 6.1427 0.8815 0.5949 36 1 6.1567 -0.8931 0.4581 37 1 5.7471 -4.5501 0.3986 38 1 4.2489 -5.4914 0.6185 39 1 6.4128 -3.1066 2.1896 40 1 6.5914 -3.8740 3.7961 41 1 4.6955 -1.8073 3.0010 42 1 4.8729 -2.5762 4.6080 43 1 2.0942 -3.8841 1.6346 44 1 2.5979 -2.1896 1.8706 45 1 4.7114 -8.3588 1.9084 46 1 1.6552 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029564638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:57 Heat of formation + Delta-G solvation = 8.193906 kcal Electronic energy + Delta-G solvation = -27672.876679 eV Core-core repulsion = 24141.342414 eV Total energy + Delta-G solvation = -3531.534265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85415 -40.27289 -38.97219 -35.44014 -34.69044 -34.20081 -32.78723 -31.64611 -31.02649 -30.10609 -28.00404 -26.09522 -25.51662 -25.49504 -24.19435 -22.35555 -21.27368 -21.09197 -20.05546 -18.70149 -17.81388 -17.19995 -16.86603 -16.59663 -16.57206 -16.31461 -15.54677 -15.19819 -14.94016 -14.72631 -14.65099 -14.44469 -14.35120 -14.05408 -13.77390 -13.57337 -13.51902 -13.28101 -13.16629 -12.88794 -12.74591 -12.69903 -12.63534 -12.43727 -12.33487 -12.03107 -11.95965 -11.82888 -11.57494 -11.51073 -11.16519 -10.87339 -10.62894 -9.83220 -9.77666 -9.38077 -8.67643 -7.86781 -5.25098 0.08031 0.39665 1.49278 1.50607 1.56916 1.71857 2.05874 2.50625 2.76318 3.33941 3.42518 3.52594 3.87040 3.90506 4.04628 4.09822 4.10438 4.21638 4.29270 4.30137 4.38976 4.42847 4.57655 4.66797 4.70294 4.72926 4.76574 4.80520 4.86644 4.91601 4.95525 5.00601 5.04139 5.07007 5.11589 5.17005 5.23432 5.35891 5.36452 5.38843 5.51287 5.56909 5.59967 5.62885 5.79972 6.03088 6.21808 6.52722 7.04444 7.16202 7.71156 8.52344 9.25614 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004386 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.210609 B = 6382.234107 C = 6960.600315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.060 4.060 6 C -0.111 4.111 7 C -0.137 4.137 8 C 0.550 3.450 9 O -0.590 6.590 10 N -0.588 5.588 11 C 0.128 3.872 12 C 0.172 3.828 13 H 0.073 0.927 14 C -0.127 4.127 15 C -0.109 4.109 16 C 0.127 3.873 17 H 0.094 0.906 18 C 0.102 3.898 19 N -0.601 5.601 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.052 4.052 23 N -0.937 5.937 24 Si 0.972 3.028 25 H -0.300 1.300 26 H -0.280 1.280 27 H -0.278 1.278 28 C -0.099 4.099 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.247 0.753 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 20.098 -1.126 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.111 4.111 4 C -0.135 4.135 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.140 4.140 8 C 0.340 3.660 9 O -0.472 6.472 10 N -0.319 5.319 11 C 0.004 3.996 12 C 0.064 3.936 13 H 0.091 0.909 14 C -0.166 4.166 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.112 0.888 18 C -0.021 4.021 19 N -0.323 5.323 20 C -0.365 4.365 21 H 0.098 0.902 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.801 3.199 25 H -0.227 1.227 26 H -0.206 1.206 27 H -0.204 1.204 28 C -0.118 4.118 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.370 19.681 -1.525 20.458 hybrid contribution 0.085 -1.925 -0.054 1.927 sum -5.285 17.757 -1.579 18.594 Atomic orbital electron populations 1.20844 0.88846 1.03685 1.03470 1.20131 0.97676 0.92165 0.99681 1.21559 0.93939 0.98450 0.97166 1.21269 0.94639 0.97285 1.00284 1.20061 0.96587 0.91904 0.97521 1.20780 0.90744 1.02474 1.02714 1.19731 0.94511 0.92228 1.07534 1.18884 0.82622 0.84228 0.80258 1.90697 1.35688 1.81117 1.39724 1.48679 1.32647 1.17969 1.32560 1.21989 0.94050 0.84138 0.99419 1.21484 0.88289 0.95341 0.88472 0.90868 1.22445 0.97812 0.96895 0.99484 1.22367 0.94367 0.97279 1.00722 1.22229 0.96064 0.85211 0.94506 0.88802 1.23035 0.87620 1.01560 0.89906 1.45279 1.21483 1.02169 1.63370 1.19255 1.20290 0.84121 1.12858 0.90152 1.25641 1.01017 1.00326 0.97647 1.70046 1.40531 1.22349 1.25464 0.85260 0.78008 0.78915 0.77680 1.22658 1.20581 1.20354 1.21225 0.91883 0.99208 0.99440 0.89879 0.89488 0.91821 0.82273 0.82581 0.91080 0.88777 0.94157 0.92783 0.93801 0.92980 0.92363 0.91355 0.90936 0.92783 0.87772 0.94388 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.80 16 2 C -0.10 -1.88 5.87 -19.90 -0.12 -1.99 16 3 C -0.09 -1.52 9.69 22.33 0.22 -1.30 16 4 C -0.12 -2.18 9.71 22.23 0.22 -1.96 16 5 C -0.06 -1.56 5.91 -19.61 -0.12 -1.68 16 6 C -0.11 -2.83 9.21 71.24 0.66 -2.18 16 7 C -0.14 -4.26 4.93 -20.09 -0.10 -4.36 16 8 C 0.55 21.74 6.21 86.78 0.54 22.27 16 9 O -0.59 -27.26 15.30 -3.90 -0.06 -27.32 16 10 N -0.59 -23.80 2.28 -812.95 -1.86 -25.66 16 11 C 0.13 6.11 5.75 86.55 0.50 6.61 16 12 C 0.17 8.14 3.07 45.33 0.14 8.28 16 13 H 0.07 4.01 6.64 -2.39 -0.02 4.00 16 14 C -0.13 -4.96 6.16 31.42 0.19 -4.77 16 15 C -0.11 -3.65 6.19 31.56 0.20 -3.45 16 16 C 0.13 4.77 4.27 45.47 0.19 4.96 16 17 H 0.09 3.20 8.14 -2.39 -0.02 3.19 16 18 C 0.10 3.62 4.86 86.15 0.42 4.04 16 19 N -0.60 -28.69 2.79 -637.42 -1.78 -30.47 16 20 C -0.24 -12.39 10.36 84.04 0.87 -11.52 16 21 H 0.08 4.01 7.84 -2.92 -0.02 3.99 16 22 C -0.05 -2.79 5.43 84.86 0.46 -2.33 16 23 N -0.94 -53.95 10.26 21.65 0.22 -53.73 16 24 Si 0.97 44.22 29.56 68.60 2.03 46.25 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 C -0.10 -2.59 7.10 22.53 0.16 -2.43 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.83 8.08 -2.38 -0.02 0.81 16 31 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 36 H 0.04 1.27 6.55 -2.39 -0.02 1.26 16 37 H 0.05 2.65 7.15 -2.38 -0.02 2.63 16 38 H 0.04 2.41 7.51 -2.39 -0.02 2.39 16 39 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 44 H 0.10 3.05 5.09 -2.39 -0.01 3.04 16 45 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 46 H 0.12 3.23 7.20 -2.91 -0.02 3.21 16 Total: -1.00 -67.57 357.45 4.66 -62.91 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.97 Total: 20.62 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.14 Total: 7.40 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.41 Total: -109.86 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.57 4.66 -62.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029564638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.105 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds