Wall clock time and date at job start Tue Mar 31 2020 11:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 115.54976 * 2 1 4 4 C 1.38244 * 119.99893 * 265.64346 * 3 2 1 5 5 C 1.38229 * 119.99951 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99886 * 0.28024 * 5 4 3 7 7 C 1.38232 * 120.00172 * 359.50435 * 6 5 4 8 8 C 1.38233 * 119.99774 * 0.47540 * 7 6 5 9 9 C 1.52998 * 117.51822 * 214.30166 * 2 1 3 10 10 C 1.53004 * 117.50052 * 145.66938 * 2 1 3 11 11 H 1.08998 * 117.49305 * 0.02580 * 10 2 1 12 12 C 1.50693 * 117.49748 * 215.00073 * 10 2 1 13 13 O 1.21285 * 120.00313 * 273.56628 * 12 10 2 14 14 N 1.34785 * 119.99882 * 93.56954 * 12 10 2 15 15 C 1.46492 * 119.99857 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.53936 * 113.74307 * 271.68005 * 16 15 14 18 18 N 1.47580 * 86.11971 * 222.04184 * 17 16 15 19 19 C 1.36938 * 134.49889 * 204.64097 * 18 17 16 20 20 H 1.07995 * 120.00287 * 173.33768 * 19 18 17 21 21 C 1.38818 * 119.99596 * 353.33596 * 19 18 17 22 22 N 1.31617 * 120.00100 * 353.68112 * 21 19 18 23 23 Si 1.86799 * 119.99906 * 173.67669 * 21 19 18 24 24 H 1.48502 * 109.47078 * 94.87927 * 23 21 19 25 25 H 1.48493 * 109.47061 * 214.88040 * 23 21 19 26 26 H 1.48502 * 109.46812 * 334.88374 * 23 21 19 27 27 C 1.47584 * 91.01029 * 24.63749 * 18 17 16 28 28 H 1.09002 * 109.46864 * 34.41837 * 1 2 3 29 29 H 1.08997 * 109.47100 * 154.42008 * 1 2 3 30 30 H 1.08997 * 109.46655 * 274.41924 * 1 2 3 31 31 H 1.07999 * 120.00070 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.99799 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.99432 * 179.72834 * 6 5 4 34 34 H 1.07999 * 120.00222 * 180.25879 * 7 6 5 35 35 H 1.08007 * 120.00108 * 179.78534 * 8 7 6 36 36 H 1.09001 * 117.50285 * 0.02562 * 9 2 1 37 37 H 1.08997 * 117.50284 * 145.02786 * 9 2 1 38 38 H 0.96996 * 120.00105 * 0.02562 * 14 12 10 39 39 H 1.09002 * 109.47847 * 300.00517 * 15 14 12 40 40 H 1.09006 * 109.47105 * 60.00233 * 15 14 12 41 41 H 1.09004 * 112.93990 * 43.40767 * 16 15 14 42 42 H 1.09006 * 113.77374 * 336.34514 * 17 16 15 43 43 H 1.09004 * 113.77174 * 107.74504 * 17 16 15 44 44 H 0.96999 * 120.00435 * 180.02562 * 22 21 19 45 45 H 1.08995 * 113.77269 * 221.05780 * 27 18 17 46 46 H 1.09005 * 113.86645 * 89.67410 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.5602 1.9440 -1.1938 5 6 3.1559 3.1914 -1.1938 6 6 3.3767 3.8519 0.0003 7 6 2.9925 3.2695 1.1937 8 6 2.3965 2.0224 1.1937 9 6 2.2369 -1.1209 -0.7647 10 6 2.2365 -1.1207 0.7654 11 1 1.6113 -1.8582 1.2685 12 6 3.5290 -0.7805 1.4614 13 8 4.5777 -0.8369 0.8548 14 7 3.5197 -0.4134 2.7583 15 6 4.7762 -0.0832 3.4351 16 6 4.4878 0.2982 4.8885 17 6 4.1828 1.7938 5.0880 18 7 5.0320 1.7037 6.2916 19 6 5.1160 2.4096 7.4620 20 1 5.7707 2.0707 8.2512 21 6 4.3596 3.5608 7.6340 22 7 3.6578 4.0432 6.6305 23 14 4.3377 4.4252 9.2898 24 1 5.3495 5.5122 9.2942 25 1 2.9904 5.0020 9.5292 26 1 4.6558 3.4485 10.3623 27 6 5.7545 0.5472 5.7272 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3632 0.0792 1.0246 31 1 2.3917 1.4260 -2.1263 32 1 3.4532 3.6477 -2.1264 33 1 3.8461 4.8245 0.0005 34 1 3.1613 3.7874 2.1262 35 1 2.0994 1.5658 2.1263 36 1 1.6121 -1.8584 -1.2683 37 1 3.1721 -0.8750 -1.2677 38 1 2.6811 -0.3687 3.2437 39 1 5.4402 -0.9473 3.4108 40 1 5.2528 0.7555 2.9275 41 1 3.7680 -0.3658 5.3672 42 1 4.5936 2.4340 4.3073 43 1 3.1352 2.0036 5.3043 44 1 3.1295 4.8478 6.7505 45 1 5.9619 -0.2385 6.4536 46 1 6.6276 0.8192 5.1340 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031862124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:54 Heat of formation + Delta-G solvation = 63.921092 kcal Electronic energy + Delta-G solvation = -26354.019380 eV Core-core repulsion = 22824.901627 eV Total energy + Delta-G solvation = -3529.117753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51679 -38.85048 -38.02664 -36.77390 -34.32226 -32.17727 -30.75682 -30.66239 -29.18858 -28.53613 -26.15507 -24.81877 -23.77797 -23.10698 -22.28575 -21.72962 -20.31576 -19.62163 -18.78722 -17.47144 -16.69492 -16.33907 -15.77864 -15.49505 -14.94796 -14.90817 -14.73846 -14.33595 -14.04055 -13.84936 -13.42788 -13.30928 -13.15025 -12.89762 -12.76819 -12.68887 -12.31050 -12.22053 -11.90272 -11.45560 -11.29214 -11.07670 -11.03860 -11.01483 -10.74091 -10.60261 -10.45929 -10.15797 -9.95733 -9.77374 -9.57247 -9.41017 -8.80441 -8.77803 -8.70598 -8.63226 -6.88708 -5.80196 -3.10462 1.44080 1.54804 2.66847 3.27322 3.37608 3.43127 3.44916 3.62940 3.88780 4.42619 4.44529 4.54687 4.65990 4.88290 5.05904 5.08439 5.15203 5.19338 5.28416 5.31825 5.35425 5.47317 5.51888 5.55332 5.59482 5.66952 5.73383 5.78871 5.84247 5.90445 5.99706 6.07303 6.13359 6.17763 6.26764 6.37300 6.57870 6.58840 6.66388 6.68092 6.72065 6.77799 7.12538 7.15853 7.34105 7.51559 7.72357 7.96203 8.43241 9.03265 9.69200 10.59603 11.38212 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.003643 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.593622 B = 7684.510822 C = 8562.814132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 C -0.058 4.058 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.099 4.099 9 C -0.135 4.135 10 C -0.180 4.180 11 H 0.127 0.873 12 C 0.544 3.456 13 O -0.542 6.542 14 N -0.718 5.718 15 C 0.132 3.868 16 C -0.154 4.154 17 C 0.178 3.822 18 N -0.611 5.611 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.126 3.874 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.253 0.747 45 H 0.045 0.955 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 -8.359 -15.940 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.065 4.065 3 C -0.058 4.058 4 C -0.128 4.128 5 C -0.142 4.142 6 C -0.138 4.138 7 C -0.127 4.127 8 C -0.117 4.117 9 C -0.172 4.172 10 C -0.201 4.201 11 H 0.145 0.855 12 C 0.330 3.670 13 O -0.419 6.419 14 N -0.368 5.368 15 C 0.008 3.992 16 C -0.174 4.174 17 C 0.053 3.947 18 N -0.337 5.337 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.000 4.000 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.509 -8.130 -16.116 19.188 hybrid contribution -0.259 0.667 1.213 1.408 sum -6.767 -7.463 -14.903 17.989 Atomic orbital electron populations 1.21366 0.90547 1.02331 1.02618 1.20203 0.94588 0.87956 1.03727 1.18946 0.99390 0.93860 0.93621 1.20859 0.99199 0.95461 0.97268 1.21071 0.99858 0.95304 0.97996 1.21191 0.99889 1.00062 0.92668 1.21302 0.97419 0.95391 0.98592 1.21029 0.98437 0.94923 0.97336 1.23173 1.02717 0.99522 0.91814 1.22465 0.98053 1.03418 0.96136 0.85495 1.19480 0.89387 0.76380 0.81775 1.90678 1.32865 1.52867 1.65510 1.46001 1.10965 1.68768 1.11111 1.21417 0.85232 1.00133 0.92417 1.23794 1.00541 1.00739 0.92306 1.22160 0.96654 0.88170 0.87739 1.46016 1.37865 1.34618 1.15193 1.19041 1.22283 1.03898 0.89984 0.90294 1.24788 1.00557 0.97192 0.97751 1.69825 1.33826 1.23474 1.29602 0.86141 0.77051 0.79556 0.83259 1.21643 1.21610 1.20548 1.22497 0.93104 0.90892 0.93526 0.91542 0.91910 0.91596 0.86420 0.86376 0.86243 0.85247 0.86040 0.87802 0.87498 0.76584 0.92114 0.91475 0.89302 0.95091 0.92279 0.93682 0.93715 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.84 37.16 0.37 -0.53 16 2 C -0.06 -0.66 2.18 -155.66 -0.34 -1.00 16 3 C -0.06 -0.74 4.40 -104.62 -0.46 -1.20 16 4 C -0.11 -1.33 9.48 -39.58 -0.38 -1.71 16 5 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 6 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 7 C -0.11 -1.60 10.05 -39.59 -0.40 -2.00 16 8 C -0.10 -1.39 8.35 -39.58 -0.33 -1.72 16 9 C -0.14 -1.35 9.15 -26.73 -0.24 -1.60 16 10 C -0.18 -1.95 5.89 -91.77 -0.54 -2.49 16 11 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 12 C 0.54 7.86 5.72 -10.99 -0.06 7.80 16 13 O -0.54 -9.97 16.41 5.55 0.09 -9.88 16 14 N -0.72 -9.76 4.54 -60.29 -0.27 -10.04 16 15 C 0.13 2.07 5.53 -4.04 -0.02 2.05 16 16 C -0.15 -2.70 3.94 -89.70 -0.35 -3.05 16 17 C 0.18 3.99 6.88 -2.98 -0.02 3.97 16 18 N -0.61 -15.47 3.69 -177.92 -0.66 -16.13 16 19 C -0.22 -6.27 10.69 -15.06 -0.16 -6.44 16 20 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.87 11.71 55.49 0.65 -26.22 16 23 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.55 8.50 -2.98 -0.03 2.52 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.12 1.67 7.05 -52.48 -0.37 1.30 16 36 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.11 1.28 7.78 -51.93 -0.40 0.87 16 38 H 0.40 4.66 8.30 -40.82 -0.34 4.32 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.03 0.74 7.89 -51.93 -0.41 0.33 16 43 H 0.06 1.43 7.64 -51.93 -0.40 1.04 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -33.17 381.12 -10.67 -43.85 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.35 Total: 5.27 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.86 Total: -9.55 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.28 Total: -52.38 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.17 -10.67 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031862124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.766 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds