Wall clock time and date at job start Tue Mar 31 2020 11:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 115.54976 * 2 1 4 4 C 1.38244 * 119.99893 * 265.64346 * 3 2 1 5 5 C 1.38229 * 119.99951 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99886 * 0.28024 * 5 4 3 7 7 C 1.38232 * 120.00172 * 359.50435 * 6 5 4 8 8 C 1.38233 * 119.99774 * 0.47540 * 7 6 5 9 9 C 1.52998 * 117.51822 * 214.30166 * 2 1 3 10 10 C 1.53004 * 117.50052 * 145.66938 * 2 1 3 11 11 H 1.08998 * 117.49305 * 0.02580 * 10 2 1 12 12 C 1.50693 * 117.49748 * 215.00073 * 10 2 1 13 13 O 1.21285 * 120.00313 * 273.56628 * 12 10 2 14 14 N 1.34785 * 119.99882 * 93.56954 * 12 10 2 15 15 C 1.46492 * 119.99857 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.53936 * 113.74307 * 271.68005 * 16 15 14 18 18 N 1.47580 * 86.11971 * 222.04184 * 17 16 15 19 19 C 1.36938 * 134.49889 * 204.64097 * 18 17 16 20 20 H 1.07995 * 120.00287 * 173.33768 * 19 18 17 21 21 C 1.38818 * 119.99596 * 353.33596 * 19 18 17 22 22 N 1.31617 * 120.00100 * 353.68112 * 21 19 18 23 23 Si 1.86799 * 119.99906 * 173.67669 * 21 19 18 24 24 H 1.48502 * 109.47078 * 94.87927 * 23 21 19 25 25 H 1.48493 * 109.47061 * 214.88040 * 23 21 19 26 26 H 1.48502 * 109.46812 * 334.88374 * 23 21 19 27 27 C 1.47584 * 91.01029 * 24.63749 * 18 17 16 28 28 H 1.09002 * 109.46864 * 34.41837 * 1 2 3 29 29 H 1.08997 * 109.47100 * 154.42008 * 1 2 3 30 30 H 1.08997 * 109.46655 * 274.41924 * 1 2 3 31 31 H 1.07999 * 120.00070 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.99799 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.99432 * 179.72834 * 6 5 4 34 34 H 1.07999 * 120.00222 * 180.25879 * 7 6 5 35 35 H 1.08007 * 120.00108 * 179.78534 * 8 7 6 36 36 H 1.09001 * 117.50285 * 0.02562 * 9 2 1 37 37 H 1.08997 * 117.50284 * 145.02786 * 9 2 1 38 38 H 0.96996 * 120.00105 * 0.02562 * 14 12 10 39 39 H 1.09002 * 109.47847 * 300.00517 * 15 14 12 40 40 H 1.09006 * 109.47105 * 60.00233 * 15 14 12 41 41 H 1.09004 * 112.93990 * 43.40767 * 16 15 14 42 42 H 1.09006 * 113.77374 * 336.34514 * 17 16 15 43 43 H 1.09004 * 113.77174 * 107.74504 * 17 16 15 44 44 H 0.96999 * 120.00435 * 180.02562 * 22 21 19 45 45 H 1.08995 * 113.77269 * 221.05780 * 27 18 17 46 46 H 1.09005 * 113.86645 * 89.67410 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.5602 1.9440 -1.1938 5 6 3.1559 3.1914 -1.1938 6 6 3.3767 3.8519 0.0003 7 6 2.9925 3.2695 1.1937 8 6 2.3965 2.0224 1.1937 9 6 2.2369 -1.1209 -0.7647 10 6 2.2365 -1.1207 0.7654 11 1 1.6113 -1.8582 1.2685 12 6 3.5290 -0.7805 1.4614 13 8 4.5777 -0.8369 0.8548 14 7 3.5197 -0.4134 2.7583 15 6 4.7762 -0.0832 3.4351 16 6 4.4878 0.2982 4.8885 17 6 4.1828 1.7938 5.0880 18 7 5.0320 1.7037 6.2916 19 6 5.1160 2.4096 7.4620 20 1 5.7707 2.0707 8.2512 21 6 4.3596 3.5608 7.6340 22 7 3.6578 4.0432 6.6305 23 14 4.3377 4.4252 9.2898 24 1 5.3495 5.5122 9.2942 25 1 2.9904 5.0020 9.5292 26 1 4.6558 3.4485 10.3623 27 6 5.7545 0.5472 5.7272 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3632 0.0792 1.0246 31 1 2.3917 1.4260 -2.1263 32 1 3.4532 3.6477 -2.1264 33 1 3.8461 4.8245 0.0005 34 1 3.1613 3.7874 2.1262 35 1 2.0994 1.5658 2.1263 36 1 1.6121 -1.8584 -1.2683 37 1 3.1721 -0.8750 -1.2677 38 1 2.6811 -0.3687 3.2437 39 1 5.4402 -0.9473 3.4108 40 1 5.2528 0.7555 2.9275 41 1 3.7680 -0.3658 5.3672 42 1 4.5936 2.4340 4.3073 43 1 3.1352 2.0036 5.3043 44 1 3.1295 4.8478 6.7505 45 1 5.9619 -0.2385 6.4536 46 1 6.6276 0.8192 5.1340 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031862124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:53 Heat of formation + Delta-G solvation = 45.020489 kcal Electronic energy + Delta-G solvation = -26354.838971 eV Core-core repulsion = 22824.901627 eV Total energy + Delta-G solvation = -3529.937345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53797 -40.12742 -39.51480 -37.75975 -35.70856 -34.17152 -31.78283 -31.64884 -30.71300 -29.44718 -27.80075 -26.58164 -25.02936 -24.04011 -23.55316 -23.12242 -21.47286 -20.79300 -20.09000 -18.79452 -18.45191 -17.38692 -17.04532 -16.97765 -16.49630 -16.03195 -15.79854 -15.74004 -15.44613 -15.10694 -14.79208 -14.48986 -14.27085 -13.99745 -13.95561 -13.66411 -13.63998 -13.33751 -13.11029 -13.03238 -12.89966 -12.69363 -12.55476 -12.26134 -12.03709 -11.95755 -11.81466 -11.61675 -11.31731 -11.27462 -11.04004 -10.85047 -10.62441 -10.01110 -9.80393 -9.63288 -8.93195 -7.93501 -5.25369 0.42525 0.50130 1.44797 1.45849 1.55450 1.58848 2.18788 2.46678 2.75682 2.86386 3.29055 3.37587 3.54614 3.68487 3.76010 3.84157 4.00696 4.08910 4.12410 4.15601 4.27291 4.29475 4.34700 4.58054 4.59647 4.70358 4.75642 4.78410 4.86102 4.86875 4.89866 4.96869 4.99951 5.08234 5.14698 5.16011 5.19474 5.21152 5.38729 5.44235 5.53606 5.58192 5.63051 5.64620 5.66948 5.91572 6.11280 6.61004 6.91089 7.30645 7.59329 8.56043 9.24625 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.003643 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.593622 B = 7684.510822 C = 8562.814132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.061 4.061 3 C -0.064 4.064 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.126 4.126 10 C -0.185 4.185 11 H 0.160 0.840 12 C 0.541 3.459 13 O -0.586 6.586 14 N -0.711 5.711 15 C 0.146 3.854 16 C -0.114 4.114 17 C 0.180 3.820 18 N -0.642 5.642 19 C -0.239 4.239 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.123 3.877 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.411 0.589 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.109 0.891 42 H 0.008 0.992 43 H 0.034 0.966 44 H 0.249 0.751 45 H 0.064 0.936 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -10.466 -16.801 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.061 4.061 3 C -0.064 4.064 4 C -0.133 4.133 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.132 4.132 9 C -0.163 4.163 10 C -0.205 4.205 11 H 0.177 0.823 12 C 0.329 3.671 13 O -0.466 6.466 14 N -0.362 5.362 15 C 0.021 3.979 16 C -0.134 4.134 17 C 0.055 3.945 18 N -0.368 5.368 19 C -0.368 4.368 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.191 1.191 27 C -0.002 4.002 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.615 -10.268 -16.968 21.245 hybrid contribution 0.154 1.332 1.436 1.965 sum -7.460 -8.936 -15.532 19.410 Atomic orbital electron populations 1.21390 0.88386 1.03619 1.03042 1.20280 0.95858 0.86422 1.03574 1.19265 0.98932 0.95067 0.93130 1.21234 0.98436 0.95526 0.98090 1.21418 0.99040 0.95363 0.98471 1.21384 1.00203 1.00788 0.92724 1.21285 0.99265 0.96336 0.98456 1.21058 0.99170 0.94918 0.98027 1.23275 1.02195 0.99809 0.91039 1.22553 0.96538 1.04612 0.96812 0.82291 1.20130 0.90280 0.75188 0.81466 1.90658 1.34836 1.54791 1.66324 1.45901 1.10661 1.68272 1.11317 1.21089 0.86329 0.99588 0.90898 1.23408 0.99260 0.97373 0.93357 1.22018 0.94712 0.91310 0.86471 1.46439 1.39530 1.35595 1.15280 1.19451 1.21856 1.04175 0.91286 0.89928 1.25618 1.00679 0.98176 1.01176 1.70007 1.34770 1.23745 1.31504 0.85103 0.76588 0.78371 0.79521 1.21652 1.21857 1.19074 1.22693 0.93919 0.89536 0.94080 0.91736 0.89367 0.91417 0.84033 0.83661 0.85233 0.87566 0.86525 0.84343 0.89669 0.75247 0.90977 0.93932 0.87319 0.97405 0.94743 0.94256 0.91746 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.84 71.98 0.71 -0.67 16 2 C -0.06 -1.10 2.18 -52.93 -0.12 -1.22 16 3 C -0.06 -1.57 4.40 -19.86 -0.09 -1.66 16 4 C -0.12 -2.65 9.48 22.27 0.21 -2.44 16 5 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 6 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 7 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 8 C -0.11 -3.31 8.35 22.27 0.19 -3.13 16 9 C -0.13 -2.14 9.15 30.60 0.28 -1.86 16 10 C -0.18 -3.53 5.89 -11.54 -0.07 -3.60 16 11 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 12 C 0.54 15.12 5.72 87.65 0.50 15.62 16 13 O -0.59 -21.43 16.41 -3.04 -0.05 -21.48 16 14 N -0.71 -18.82 4.54 -463.05 -2.10 -20.92 16 15 C 0.15 4.54 5.53 86.38 0.48 5.02 16 16 C -0.11 -3.96 3.94 -10.14 -0.04 -4.00 16 17 C 0.18 8.40 6.88 86.48 0.59 8.99 16 18 N -0.64 -33.00 3.69 -716.81 -2.64 -35.65 16 19 C -0.24 -13.53 10.69 84.03 0.90 -12.64 16 20 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 22 N -0.95 -57.50 11.71 21.65 0.25 -57.25 16 23 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.12 4.89 8.50 86.48 0.74 5.62 16 28 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 29 H 0.09 0.71 7.90 -2.39 -0.02 0.69 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.11 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.12 3.37 7.05 -2.91 -0.02 3.35 16 36 H 0.14 1.40 8.05 -2.39 -0.02 1.38 16 37 H 0.08 1.88 7.78 -2.39 -0.02 1.86 16 38 H 0.41 9.10 8.30 -92.71 -0.77 8.33 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.56 7.84 -2.38 -0.02 1.54 16 41 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 42 H 0.01 0.41 7.89 -2.38 -0.02 0.39 16 43 H 0.03 1.75 7.64 -2.38 -0.02 1.73 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.04 1.53 8.10 -2.38 -0.02 1.52 16 Total: -1.00 -74.32 381.12 3.10 -71.22 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.20 Total: 25.61 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.42 Total: -9.33 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.49 Total: -113.82 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.32 3.10 -71.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031862124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.239 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds