Wall clock time and date at job start Tue Mar 31 2020 10:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 119.92220 * 2 1 4 4 C 1.38342 * 120.28897 * 179.77208 * 3 2 1 5 5 C 1.37982 * 120.14167 * 0.50929 * 4 3 2 6 6 C 1.50704 * 120.07302 * 179.77289 * 5 4 3 7 7 C 1.53002 * 117.50015 * 66.55286 * 6 5 4 8 8 C 1.53004 * 60.00103 * 252.51365 * 7 6 5 9 9 C 1.39555 * 119.85251 * 359.49244 * 5 4 3 10 10 C 1.47853 * 120.14255 * 180.27861 * 9 5 4 11 11 O 1.21551 * 119.99790 * 6.12261 * 10 9 5 12 12 N 1.34777 * 119.99824 * 186.12461 * 10 9 5 13 13 C 1.46495 * 119.99673 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47009 * 179.97438 * 13 12 10 15 15 C 1.53952 * 113.74158 * 273.73673 * 14 13 12 16 16 N 1.47806 * 86.03550 * 222.08370 * 15 14 13 17 17 C 1.36940 * 134.45637 * 204.64151 * 16 15 14 18 18 H 1.07993 * 120.00333 * 179.87090 * 17 16 15 19 19 C 1.38815 * 119.99547 * 359.87229 * 17 16 15 20 20 N 1.31611 * 120.00393 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47419 * 90.00178 * 21 19 17 23 23 H 1.48506 * 109.46915 * 209.99650 * 21 19 17 24 24 H 1.48490 * 109.47416 * 329.99713 * 21 19 17 25 25 C 1.47579 * 91.05490 * 24.55100 * 16 15 14 26 26 C 1.37930 * 119.92783 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47066 * 269.97742 * 1 2 3 28 28 H 1.08999 * 109.47492 * 29.97161 * 1 2 3 29 29 H 1.08993 * 109.47193 * 149.98227 * 1 2 3 30 30 H 1.07991 * 119.85750 * 0.02562 * 3 2 1 31 31 H 1.07990 * 119.92753 * 180.25813 * 4 3 2 32 32 H 1.08997 * 115.56334 * 212.24490 * 6 5 4 33 33 H 1.08995 * 117.49741 * 145.01983 * 7 6 5 34 34 H 1.09002 * 117.49902 * 0.02562 * 7 6 5 35 35 H 1.08998 * 117.49609 * 107.48707 * 8 7 6 36 36 H 1.08991 * 117.49772 * 252.48951 * 8 7 6 37 37 H 0.96993 * 119.99940 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47059 * 299.99343 * 13 12 10 39 39 H 1.08999 * 109.47791 * 59.99630 * 13 12 10 40 40 H 1.08998 * 112.94650 * 45.33119 * 14 13 12 41 41 H 1.09003 * 113.76696 * 336.35066 * 15 14 13 42 42 H 1.08995 * 113.76293 * 107.74503 * 15 14 13 43 43 H 0.97000 * 120.00021 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.76935 * 221.15305 * 25 16 15 45 45 H 1.08998 * 113.76829 * 89.74998 * 25 16 15 46 46 H 1.07999 * 120.07694 * 359.95471 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2083 0.0048 5 6 4.2812 0.0195 -0.0011 6 6 5.7882 0.0310 -0.0011 7 6 6.4906 0.5703 1.2467 8 6 6.4843 1.3929 -0.0434 9 6 3.5911 -1.1935 -0.0011 10 6 4.3353 -2.4710 -0.0011 11 8 5.5456 -2.4694 0.1112 12 7 3.6716 -3.6375 -0.1256 13 6 4.4089 -4.9033 -0.1251 14 6 3.4262 -6.0660 -0.2784 15 6 2.8286 -6.5524 1.0544 16 7 3.0317 -7.9188 0.5288 17 6 2.4534 -9.1359 0.7725 18 1 2.7915 -10.0112 0.2378 19 6 1.4325 -9.2446 1.7068 20 7 1.0208 -8.1780 2.3587 21 14 0.6431 -10.9048 2.0387 22 1 1.3784 -11.5933 3.1298 23 1 -0.7722 -10.7079 2.4431 24 1 0.6954 -11.7328 0.8072 25 6 4.1058 -7.4446 -0.3653 26 6 2.1951 -1.1954 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6538 2.1326 0.0004 31 1 4.1134 2.1476 0.0089 32 1 6.2648 -0.7944 -0.5297 33 1 7.4292 0.0996 1.5388 34 1 5.8627 0.9164 2.0677 35 1 5.8522 2.2805 -0.0712 36 1 7.4188 1.4637 -0.5997 37 1 2.7058 -3.6388 -0.2148 38 1 5.1156 -4.9126 -0.9550 39 1 4.9510 -5.0078 0.8148 40 1 2.6822 -5.8937 -1.0561 41 1 3.4447 -6.3196 1.9230 42 1 1.7810 -6.2837 1.1900 43 1 0.3072 -8.2539 3.0113 44 1 4.0760 -7.8871 -1.3610 45 1 5.0978 -7.4746 0.0854 46 1 1.6552 -2.1307 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031874226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:38 Heat of formation + Delta-G solvation = 67.137778 kcal Electronic energy + Delta-G solvation = -25384.273177 eV Core-core repulsion = 21855.294910 eV Total energy + Delta-G solvation = -3528.978267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.57688 -38.82675 -37.82892 -37.07278 -34.40417 -32.57985 -32.22906 -31.36743 -28.74401 -27.29314 -26.00279 -24.80331 -23.85862 -23.12699 -22.34803 -21.90100 -20.37055 -20.30830 -18.97615 -17.38990 -16.71373 -16.60314 -15.99686 -15.41851 -15.19909 -14.94005 -14.74612 -14.63466 -14.11237 -13.96658 -13.85777 -13.62817 -13.18483 -12.90065 -12.52153 -12.43631 -12.19628 -12.15822 -11.76971 -11.64704 -11.40435 -11.33315 -11.22855 -11.00304 -10.72335 -10.64172 -10.58733 -10.49985 -9.94058 -9.76438 -9.48972 -9.36196 -9.17633 -8.81822 -8.79513 -8.52475 -6.88694 -5.77794 -3.09842 0.74256 1.12378 2.87395 3.31618 3.38521 3.43383 3.45110 3.58816 3.97135 4.40923 4.44533 4.53908 4.64807 4.68634 4.83894 4.98170 5.04767 5.13173 5.20681 5.27866 5.31506 5.32734 5.36830 5.41805 5.52794 5.59463 5.63639 5.73488 5.78027 5.83291 5.91108 6.01106 6.03699 6.05271 6.13664 6.23659 6.32607 6.35138 6.49676 6.57284 6.65096 6.70387 6.76467 7.20803 7.34452 7.53821 7.66921 7.97099 8.35137 9.03860 9.70050 10.59136 11.39407 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.002785 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.140538 B =10051.542747 C =11187.293787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.130 4.130 5 C 0.001 3.999 6 C -0.114 4.114 7 C -0.159 4.159 8 C -0.189 4.189 9 C -0.124 4.124 10 C 0.554 3.446 11 O -0.535 6.535 12 N -0.717 5.717 13 C 0.131 3.869 14 C -0.154 4.154 15 C 0.169 3.831 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.129 3.871 26 C -0.082 4.082 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.036 0.964 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 22.027 -6.184 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.148 4.148 5 C 0.000 4.000 6 C -0.132 4.132 7 C -0.196 4.196 8 C -0.226 4.226 9 C -0.127 4.127 10 C 0.342 3.658 11 O -0.414 6.414 12 N -0.368 5.368 13 C 0.007 3.993 14 C -0.174 4.174 15 C 0.043 3.957 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.002 3.998 26 C -0.101 4.101 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.853 21.739 -5.951 22.865 hybrid contribution -0.926 -0.957 0.390 1.388 sum 2.927 20.782 -5.561 21.711 Atomic orbital electron populations 1.20806 0.90660 1.03024 1.02678 1.19850 0.96421 0.92793 1.00840 1.21180 0.93997 0.97642 0.98401 1.21020 0.94013 0.97713 1.02037 1.19210 0.94014 0.91591 0.95208 1.21421 0.90176 0.98090 1.03511 1.22879 1.02333 1.03034 0.91386 1.23110 1.02677 0.94883 1.01908 1.19792 0.93391 0.93283 1.06241 1.18234 0.87192 0.83618 0.76771 1.90683 1.13672 1.87079 1.49961 1.46010 1.11160 1.05985 1.73599 1.21467 0.94633 0.81305 1.01893 1.23814 0.98340 0.92999 1.02243 1.22353 0.99629 0.83292 0.90386 1.45985 1.37511 1.04953 1.45449 1.19036 1.12675 0.84816 1.18498 0.90255 1.24779 0.99363 0.97517 0.98849 1.69808 1.31034 1.27177 1.28890 0.86123 0.78538 0.83066 0.78056 1.21625 1.21632 1.20626 1.22482 0.92445 0.90119 0.94736 1.21254 0.92752 0.98338 0.97754 0.90921 0.91511 0.91139 0.85721 0.85362 0.84186 0.88472 0.89089 0.88857 0.88607 0.76448 0.91832 0.91271 0.89240 0.95480 0.91001 0.93678 0.93654 0.94631 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.10 -0.95 5.87 -104.68 -0.61 -1.57 16 3 C -0.09 -0.84 9.69 -39.49 -0.38 -1.23 16 4 C -0.13 -1.28 9.37 -39.64 -0.37 -1.66 16 5 C 0.00 0.01 5.62 -104.22 -0.59 -0.58 16 6 C -0.11 -1.38 4.74 -91.77 -0.44 -1.82 16 7 C -0.16 -1.71 10.22 -26.73 -0.27 -1.98 16 8 C -0.19 -1.75 9.87 -26.73 -0.26 -2.01 16 9 C -0.12 -1.61 5.87 -104.96 -0.62 -2.22 16 10 C 0.55 8.31 7.73 -12.33 -0.10 8.22 16 11 O -0.53 -9.28 13.33 5.32 0.07 -9.21 16 12 N -0.72 -10.12 5.51 -61.25 -0.34 -10.46 16 13 C 0.13 2.04 5.51 -4.04 -0.02 2.02 16 14 C -0.15 -2.74 3.93 -89.69 -0.35 -3.09 16 15 C 0.17 3.86 7.08 -2.84 -0.02 3.84 16 16 N -0.61 -15.67 3.70 -177.71 -0.66 -16.32 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.43 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.18 11.39 55.49 0.63 -26.54 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.13 2.59 8.51 -2.97 -0.03 2.56 16 26 C -0.08 -0.91 9.17 -39.19 -0.36 -1.27 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.13 1.01 5.93 -52.49 -0.31 0.70 16 32 H 0.14 2.00 5.90 -51.93 -0.31 1.69 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.73 6.09 -51.93 -0.32 0.41 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.94 6.54 -40.82 -0.27 4.68 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 42 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.13 1.26 6.45 -52.49 -0.34 0.92 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -32.58 373.54 -10.92 -43.50 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.92 Total: 4.34 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.32 Total: -8.03 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.36 Total: -53.33 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.58 -10.92 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031874226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.641 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds