Wall clock time and date at job start Tue Mar 31 2020 10:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 119.92220 * 2 1 4 4 C 1.38342 * 120.28897 * 179.77208 * 3 2 1 5 5 C 1.37982 * 120.14167 * 0.50929 * 4 3 2 6 6 C 1.50704 * 120.07302 * 179.77289 * 5 4 3 7 7 C 1.53002 * 117.50015 * 66.55286 * 6 5 4 8 8 C 1.53004 * 60.00103 * 252.51365 * 7 6 5 9 9 C 1.39555 * 119.85251 * 359.49244 * 5 4 3 10 10 C 1.47853 * 120.14255 * 180.27861 * 9 5 4 11 11 O 1.21551 * 119.99790 * 6.12261 * 10 9 5 12 12 N 1.34777 * 119.99824 * 186.12461 * 10 9 5 13 13 C 1.46495 * 119.99673 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47009 * 179.97438 * 13 12 10 15 15 C 1.53952 * 113.74158 * 273.73673 * 14 13 12 16 16 N 1.47806 * 86.03550 * 222.08370 * 15 14 13 17 17 C 1.36940 * 134.45637 * 204.64151 * 16 15 14 18 18 H 1.07993 * 120.00333 * 179.87090 * 17 16 15 19 19 C 1.38815 * 119.99547 * 359.87229 * 17 16 15 20 20 N 1.31611 * 120.00393 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47419 * 90.00178 * 21 19 17 23 23 H 1.48506 * 109.46915 * 209.99650 * 21 19 17 24 24 H 1.48490 * 109.47416 * 329.99713 * 21 19 17 25 25 C 1.47579 * 91.05490 * 24.55100 * 16 15 14 26 26 C 1.37930 * 119.92783 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47066 * 269.97742 * 1 2 3 28 28 H 1.08999 * 109.47492 * 29.97161 * 1 2 3 29 29 H 1.08993 * 109.47193 * 149.98227 * 1 2 3 30 30 H 1.07991 * 119.85750 * 0.02562 * 3 2 1 31 31 H 1.07990 * 119.92753 * 180.25813 * 4 3 2 32 32 H 1.08997 * 115.56334 * 212.24490 * 6 5 4 33 33 H 1.08995 * 117.49741 * 145.01983 * 7 6 5 34 34 H 1.09002 * 117.49902 * 0.02562 * 7 6 5 35 35 H 1.08998 * 117.49609 * 107.48707 * 8 7 6 36 36 H 1.08991 * 117.49772 * 252.48951 * 8 7 6 37 37 H 0.96993 * 119.99940 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47059 * 299.99343 * 13 12 10 39 39 H 1.08999 * 109.47791 * 59.99630 * 13 12 10 40 40 H 1.08998 * 112.94650 * 45.33119 * 14 13 12 41 41 H 1.09003 * 113.76696 * 336.35066 * 15 14 13 42 42 H 1.08995 * 113.76293 * 107.74503 * 15 14 13 43 43 H 0.97000 * 120.00021 * 179.97438 * 20 19 17 44 44 H 1.09001 * 113.76935 * 221.15305 * 25 16 15 45 45 H 1.08998 * 113.76829 * 89.74998 * 25 16 15 46 46 H 1.07999 * 120.07694 * 359.95471 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2083 0.0048 5 6 4.2812 0.0195 -0.0011 6 6 5.7882 0.0310 -0.0011 7 6 6.4906 0.5703 1.2467 8 6 6.4843 1.3929 -0.0434 9 6 3.5911 -1.1935 -0.0011 10 6 4.3353 -2.4710 -0.0011 11 8 5.5456 -2.4694 0.1112 12 7 3.6716 -3.6375 -0.1256 13 6 4.4089 -4.9033 -0.1251 14 6 3.4262 -6.0660 -0.2784 15 6 2.8286 -6.5524 1.0544 16 7 3.0317 -7.9188 0.5288 17 6 2.4534 -9.1359 0.7725 18 1 2.7915 -10.0112 0.2378 19 6 1.4325 -9.2446 1.7068 20 7 1.0208 -8.1780 2.3587 21 14 0.6431 -10.9048 2.0387 22 1 1.3784 -11.5933 3.1298 23 1 -0.7722 -10.7079 2.4431 24 1 0.6954 -11.7328 0.8072 25 6 4.1058 -7.4446 -0.3653 26 6 2.1951 -1.1954 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6538 2.1326 0.0004 31 1 4.1134 2.1476 0.0089 32 1 6.2648 -0.7944 -0.5297 33 1 7.4292 0.0996 1.5388 34 1 5.8627 0.9164 2.0677 35 1 5.8522 2.2805 -0.0712 36 1 7.4188 1.4637 -0.5997 37 1 2.7058 -3.6388 -0.2148 38 1 5.1156 -4.9126 -0.9550 39 1 4.9510 -5.0078 0.8148 40 1 2.6822 -5.8937 -1.0561 41 1 3.4447 -6.3196 1.9230 42 1 1.7810 -6.2837 1.1900 43 1 0.3072 -8.2539 3.0113 44 1 4.0760 -7.8871 -1.3610 45 1 5.0978 -7.4746 0.0854 46 1 1.6552 -2.1307 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031874226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:37 Heat of formation + Delta-G solvation = 48.870854 kcal Electronic energy + Delta-G solvation = -25385.065290 eV Core-core repulsion = 21855.294910 eV Total energy + Delta-G solvation = -3529.770380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54926 -40.10631 -39.27279 -37.87896 -35.75242 -34.21250 -33.30882 -32.31010 -30.41220 -28.02392 -27.64344 -26.56255 -24.93879 -24.06615 -23.43540 -23.12538 -21.54080 -21.23942 -20.46718 -18.78098 -18.35821 -17.51172 -17.09163 -16.98862 -16.43588 -16.15447 -15.90861 -15.68329 -15.46153 -15.19175 -14.77539 -14.69613 -14.51563 -14.18702 -13.99885 -13.32882 -13.17458 -13.12207 -13.03895 -12.89518 -12.87106 -12.57739 -12.50580 -12.42981 -12.25744 -11.97647 -11.81050 -11.59676 -11.44472 -11.36934 -11.24482 -10.87916 -10.49861 -10.15679 -9.87264 -9.33385 -8.92923 -7.91297 -5.24699 -0.12416 0.34553 1.45066 1.47031 1.55616 1.87506 2.16658 2.46896 2.71291 3.13703 3.29171 3.37938 3.60169 3.66087 3.76704 3.82784 4.00908 4.05006 4.08545 4.18832 4.29529 4.33591 4.42007 4.52653 4.59071 4.61550 4.76022 4.77178 4.84399 4.85067 4.88568 4.94088 4.96862 5.01278 5.08163 5.17850 5.24473 5.25007 5.31470 5.34464 5.43767 5.53425 5.59233 5.62840 5.65380 5.92977 5.96202 6.53640 6.91510 7.20719 7.59944 8.55635 9.25570 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.002785 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.140538 B =10051.542747 C =11187.293787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.130 4.130 5 C -0.013 4.013 6 C -0.137 4.137 7 C -0.167 4.167 8 C -0.163 4.163 9 C -0.149 4.149 10 C 0.551 3.449 11 O -0.565 6.565 12 N -0.713 5.713 13 C 0.144 3.856 14 C -0.116 4.116 15 C 0.166 3.834 16 N -0.645 5.645 17 C -0.237 4.237 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.267 1.267 25 C 0.127 3.873 26 C -0.090 4.090 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.010 0.990 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 23.799 -7.295 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.104 4.104 4 C -0.148 4.148 5 C -0.015 4.015 6 C -0.155 4.155 7 C -0.204 4.204 8 C -0.199 4.199 9 C -0.152 4.152 10 C 0.340 3.660 11 O -0.446 6.446 12 N -0.365 5.365 13 C 0.019 3.981 14 C -0.135 4.135 15 C 0.041 3.959 16 N -0.371 5.371 17 C -0.365 4.365 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.192 1.192 25 C 0.002 3.998 26 C -0.109 4.109 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.192 23.515 -7.093 24.768 hybrid contribution -0.679 -1.457 0.722 1.762 sum 2.513 22.059 -6.370 23.097 Atomic orbital electron populations 1.20856 0.88950 1.04040 1.03230 1.20174 0.97706 0.92487 0.99971 1.21588 0.93800 0.98687 0.96307 1.21286 0.94597 0.97635 1.01276 1.19381 0.94065 0.92213 0.95792 1.21283 0.90596 0.99077 1.04507 1.22915 1.02011 1.03666 0.91802 1.23213 1.02731 0.94010 0.99990 1.19736 0.94163 0.92482 1.08849 1.18648 0.87008 0.84393 0.75921 1.90671 1.15000 1.87587 1.51377 1.45916 1.11562 1.05400 1.73573 1.21197 0.94061 0.81220 1.01594 1.23414 0.98039 0.92908 0.99177 1.22258 0.98106 0.83172 0.92370 1.46404 1.39196 1.04950 1.46589 1.19447 1.12703 0.86133 1.18227 0.89870 1.25631 1.00300 1.01016 0.99121 1.69995 1.31551 1.29091 1.29527 0.85074 0.77087 0.79049 0.78092 1.21603 1.21872 1.19183 1.22685 0.91730 0.90828 0.94599 1.21401 0.92085 0.99515 0.97897 0.90497 0.89612 0.91104 0.82496 0.83082 0.87081 0.89046 0.88741 0.86694 0.87679 0.75425 0.90507 0.92883 0.87793 0.97214 0.93633 0.94264 0.91863 0.93585 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.10 -1.77 5.87 -19.90 -0.12 -1.89 16 3 C -0.09 -1.28 9.69 22.33 0.22 -1.06 16 4 C -0.13 -2.26 9.37 22.23 0.21 -2.05 16 5 C -0.01 -0.32 5.62 -19.61 -0.11 -0.43 16 6 C -0.14 -3.32 4.74 -11.54 -0.05 -3.38 16 7 C -0.17 -3.53 10.22 30.60 0.31 -3.21 16 8 C -0.16 -2.74 9.87 30.60 0.30 -2.44 16 9 C -0.15 -3.89 5.87 -20.09 -0.12 -4.01 16 10 C 0.55 16.97 7.73 86.79 0.67 17.65 16 11 O -0.57 -20.44 13.33 -3.88 -0.05 -20.50 16 12 N -0.71 -20.33 5.51 -465.97 -2.57 -22.90 16 13 C 0.14 4.47 5.51 86.38 0.48 4.95 16 14 C -0.12 -4.07 3.93 -10.13 -0.04 -4.11 16 15 C 0.17 7.82 7.08 86.44 0.61 8.43 16 16 N -0.64 -33.25 3.70 -716.14 -2.65 -35.90 16 17 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 18 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 20 N -0.95 -57.55 11.39 21.65 0.25 -57.30 16 21 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C 0.13 5.00 8.51 86.49 0.74 5.73 16 26 C -0.09 -1.94 9.17 22.52 0.21 -1.73 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.16 1.31 8.06 -2.92 -0.02 1.28 16 31 H 0.15 1.83 5.93 -2.92 -0.02 1.82 16 32 H 0.11 3.35 5.90 -2.39 -0.01 3.33 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 1.42 6.09 -2.39 -0.01 1.40 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 10.12 6.54 -92.71 -0.61 9.51 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.85 7.87 -2.39 -0.02 1.83 16 40 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 42 H 0.05 2.36 7.17 -2.39 -0.02 2.35 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 46 H 0.14 2.59 6.45 -2.91 -0.02 2.57 16 Total: -1.00 -72.15 373.54 2.77 -69.39 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.38 Total: 23.45 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.38 Total: -4.15 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.97 Total: -116.10 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.15 2.77 -69.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031874226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.256 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds