Wall clock time and date at job start Tue Mar 31 2020 10:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38263 * 119.99899 * 2 1 4 4 C 1.38211 * 119.99754 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00242 * 359.86291 * 4 3 2 6 6 C 1.38223 * 119.99727 * 0.39129 * 5 4 3 7 7 C 1.50706 * 119.99588 * 179.81476 * 6 5 4 8 8 H 1.09003 * 115.55737 * 154.03873 * 7 6 5 9 9 C 1.52996 * 117.49909 * 8.34575 * 7 6 5 10 10 C 1.52998 * 117.49864 * 299.72220 * 7 6 5 11 11 H 1.09002 * 117.51592 * 0.02562 * 10 7 6 12 12 C 1.50701 * 117.49887 * 214.98420 * 10 7 6 13 13 O 1.21280 * 119.99781 * 359.97438 * 12 10 7 14 14 N 1.34771 * 119.99622 * 179.97438 * 12 10 7 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.53949 * 113.74347 * 273.74400 * 16 15 14 18 18 N 1.47815 * 86.03484 * 222.08338 * 17 16 15 19 19 C 1.36938 * 134.45371 * 204.64173 * 18 17 16 20 20 H 1.08006 * 119.99863 * 179.86536 * 19 18 17 21 21 C 1.38813 * 120.00155 * 359.86817 * 19 18 17 22 22 N 1.31619 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46941 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47570 * 119.99589 * 23 21 19 26 26 H 1.48500 * 109.47093 * 240.00031 * 23 21 19 27 27 C 1.47574 * 91.05327 * 24.54719 * 18 17 16 28 28 C 1.38208 * 119.99877 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47264 * 269.97706 * 1 2 3 30 30 H 1.09000 * 109.46760 * 29.98092 * 1 2 3 31 31 H 1.09005 * 109.46810 * 149.97716 * 1 2 3 32 32 H 1.07998 * 119.99614 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99954 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.00412 * 180.20968 * 5 4 3 35 35 H 1.08999 * 117.49340 * 145.02093 * 9 7 6 36 36 H 1.08993 * 117.52005 * 359.97438 * 9 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 38 38 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 39 39 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 40 40 H 1.09005 * 112.94291 * 45.33055 * 16 15 14 41 41 H 1.08999 * 113.76486 * 336.34486 * 17 16 15 42 42 H 1.08998 * 113.77540 * 107.74500 * 17 16 15 43 43 H 0.96999 * 120.00311 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.77298 * 221.15734 * 27 18 17 45 45 H 1.09002 * 113.87696 * 89.76910 * 27 18 17 46 46 H 1.07993 * 120.00152 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0039 6 6 3.5806 -1.1969 -0.0014 7 6 4.3342 -2.5021 -0.0019 8 1 3.8022 -3.3524 0.4247 9 6 5.8496 -2.4429 0.2005 10 6 5.2743 -2.7745 -1.1778 11 1 5.3483 -2.0098 -1.9511 12 6 5.3939 -4.1981 -1.6577 13 8 4.7582 -5.0765 -1.1145 14 7 6.2073 -4.4949 -2.6905 15 6 6.3240 -5.8789 -3.1567 16 6 7.3030 -5.9407 -4.3308 17 6 6.6506 -5.6624 -5.6972 18 7 7.4744 -6.7806 -6.2031 19 6 7.9654 -7.1303 -7.4327 20 1 8.5621 -8.0239 -7.5416 21 6 7.6962 -6.3363 -8.5390 22 7 6.9687 -5.2475 -8.4063 23 14 8.3654 -6.8137 -10.2164 24 1 9.1463 -8.0713 -10.0981 25 1 7.2369 -7.0182 -11.1597 26 1 9.2455 -5.7310 -10.7247 27 6 7.5572 -7.3670 -4.8514 28 6 2.1981 -1.1969 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1327 0.0010 34 1 5.3517 0.0000 0.0078 35 1 6.3145 -3.2544 0.7603 36 1 6.3019 -1.4602 0.3337 37 1 6.7154 -3.7923 -3.1252 38 1 6.6905 -6.5062 -2.3441 39 1 5.3465 -6.2371 -3.4798 40 1 8.2141 -5.3688 -4.1549 41 1 5.5790 -5.8605 -5.7208 42 1 6.9148 -4.6937 -6.1211 43 1 6.7802 -4.6928 -9.1794 44 1 8.5440 -7.7566 -4.6011 45 1 6.7535 -8.0674 -4.6243 46 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032045348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:40 Heat of formation + Delta-G solvation = 57.881482 kcal Electronic energy + Delta-G solvation = -24519.459289 eV Core-core repulsion = 20990.079639 eV Total energy + Delta-G solvation = -3529.379650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39150 -39.37117 -38.07440 -36.59531 -34.35062 -32.77054 -32.17529 -31.08933 -28.97578 -27.17600 -26.26844 -24.81345 -24.15944 -23.60687 -22.33037 -21.77974 -20.36867 -19.81013 -18.92168 -17.51712 -16.90319 -16.64862 -15.95276 -15.52411 -15.29672 -15.11272 -14.76436 -14.42733 -14.18825 -14.04325 -13.75557 -13.42156 -13.29877 -13.00166 -12.65243 -12.55787 -12.42433 -12.34149 -12.10416 -11.52840 -11.42994 -11.34461 -11.17470 -11.01002 -10.87400 -10.73238 -10.63265 -10.55932 -10.01420 -9.76120 -9.68994 -9.43573 -8.97693 -8.82998 -8.80246 -8.72432 -6.88779 -5.77964 -3.10093 1.05015 1.15613 2.55850 3.21239 3.38036 3.43252 3.44563 3.45962 3.86141 4.30668 4.44391 4.51407 4.61328 4.64521 4.72117 4.86853 4.89274 5.03339 5.09550 5.16927 5.20715 5.31042 5.31825 5.35972 5.40622 5.48592 5.56111 5.64680 5.73320 5.78541 5.83596 5.86228 5.91989 6.04015 6.23392 6.24247 6.34961 6.35789 6.41382 6.55921 6.63968 6.75272 6.77376 7.21058 7.34554 7.54243 7.67501 7.97031 8.35037 9.03767 9.69890 10.58933 11.39305 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.002175 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.360294 B =12871.004779 C =13629.383464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.085 4.085 8 H 0.127 0.873 9 C -0.145 4.145 10 C -0.175 4.175 11 H 0.126 0.874 12 C 0.540 3.460 13 O -0.548 6.548 14 N -0.716 5.716 15 C 0.130 3.870 16 C -0.153 4.153 17 C 0.169 3.831 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.128 3.872 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.403 0.597 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.036 0.964 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 13.328 20.374 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.047 4.047 7 C -0.103 4.103 8 H 0.144 0.856 9 C -0.182 4.182 10 C -0.197 4.197 11 H 0.144 0.856 12 C 0.326 3.674 13 O -0.426 6.426 14 N -0.366 5.366 15 C 0.006 3.994 16 C -0.173 4.173 17 C 0.043 3.957 18 N -0.339 5.339 19 C -0.349 4.349 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.002 3.998 28 C -0.128 4.128 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.238 0.762 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.461 12.689 20.376 25.137 hybrid contribution 0.502 0.094 -1.382 1.474 sum -6.959 12.782 18.994 23.928 Atomic orbital electron populations 1.20806 0.91153 1.02934 1.02315 1.19919 0.96128 0.93058 0.99364 1.21035 0.94327 0.97461 1.01579 1.21097 0.94286 0.97885 0.99900 1.21057 1.00043 0.91908 1.01355 1.19122 0.93316 0.92944 0.99300 1.21064 0.91857 0.96790 1.00626 0.85561 1.23120 0.95436 1.03616 0.96032 1.22374 1.07354 0.96285 0.93638 0.85624 1.19554 0.79048 0.88986 0.79851 1.90680 1.45529 1.49032 1.57336 1.45977 1.45641 1.11172 1.33813 1.21465 1.00172 0.81462 0.96296 1.23804 0.98736 1.00150 0.94603 1.22352 0.93006 0.94363 0.85938 1.45998 1.58870 1.26122 1.02952 1.19084 1.25618 1.06957 0.83286 0.90190 1.24792 1.00362 0.97572 0.97881 1.69822 1.42381 1.15569 1.29140 0.86043 0.78045 0.77611 0.84048 1.20454 1.21744 1.21705 1.22483 0.98361 0.92829 0.86153 1.20896 0.93366 0.97829 1.00663 0.91174 0.91540 0.91367 0.86225 0.86025 0.85843 0.87720 0.87443 0.76249 0.91976 0.91411 0.89204 0.95507 0.90974 0.93717 0.93670 0.94658 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.13 -1.05 9.70 -39.58 -0.38 -1.44 16 4 C -0.11 -0.94 10.05 -39.59 -0.40 -1.34 16 5 C -0.13 -1.11 9.30 -39.58 -0.37 -1.48 16 6 C -0.05 -0.47 5.61 -104.62 -0.59 -1.05 16 7 C -0.08 -0.88 5.55 -91.77 -0.51 -1.39 16 8 H 0.13 1.46 7.67 -51.93 -0.40 1.06 16 9 C -0.14 -1.26 9.56 -26.73 -0.26 -1.52 16 10 C -0.18 -1.88 5.82 -91.77 -0.53 -2.41 16 11 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 12 C 0.54 7.64 7.61 -10.99 -0.08 7.56 16 13 O -0.55 -9.67 16.26 5.56 0.09 -9.58 16 14 N -0.72 -9.80 5.56 -60.29 -0.33 -10.13 16 15 C 0.13 2.03 5.51 -4.04 -0.02 2.01 16 16 C -0.15 -2.72 3.93 -89.69 -0.35 -3.08 16 17 C 0.17 3.88 7.08 -2.83 -0.02 3.86 16 18 N -0.61 -15.75 3.70 -177.69 -0.66 -16.41 16 19 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.13 2.59 8.51 -2.97 -0.03 2.56 16 28 C -0.11 -1.09 9.39 -39.59 -0.37 -1.46 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.88 6.02 -52.49 -0.32 0.56 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 0.72 6.17 -51.93 -0.32 0.40 16 37 H 0.40 4.74 8.47 -40.82 -0.35 4.40 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 42 H 0.07 1.82 7.17 -51.93 -0.37 1.44 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -33.54 382.24 -11.14 -44.68 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.18 Total: 2.97 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -4.42 Total: -7.77 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.36 Total: -53.24 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.54 -11.14 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032045348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.561 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds