Wall clock time and date at job start Tue Mar 31 2020 10:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38263 * 119.99899 * 2 1 4 4 C 1.38211 * 119.99754 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00242 * 359.86291 * 4 3 2 6 6 C 1.38223 * 119.99727 * 0.39129 * 5 4 3 7 7 C 1.50706 * 119.99588 * 179.81476 * 6 5 4 8 8 H 1.09003 * 115.55737 * 154.03873 * 7 6 5 9 9 C 1.52996 * 117.49909 * 8.34575 * 7 6 5 10 10 C 1.52998 * 117.49864 * 299.72220 * 7 6 5 11 11 H 1.09002 * 117.51592 * 0.02562 * 10 7 6 12 12 C 1.50701 * 117.49887 * 214.98420 * 10 7 6 13 13 O 1.21280 * 119.99781 * 359.97438 * 12 10 7 14 14 N 1.34771 * 119.99622 * 179.97438 * 12 10 7 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.53949 * 113.74347 * 273.74400 * 16 15 14 18 18 N 1.47815 * 86.03484 * 222.08338 * 17 16 15 19 19 C 1.36938 * 134.45371 * 204.64173 * 18 17 16 20 20 H 1.08006 * 119.99863 * 179.86536 * 19 18 17 21 21 C 1.38813 * 120.00155 * 359.86817 * 19 18 17 22 22 N 1.31619 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46941 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47570 * 119.99589 * 23 21 19 26 26 H 1.48500 * 109.47093 * 240.00031 * 23 21 19 27 27 C 1.47574 * 91.05327 * 24.54719 * 18 17 16 28 28 C 1.38208 * 119.99877 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47264 * 269.97706 * 1 2 3 30 30 H 1.09000 * 109.46760 * 29.98092 * 1 2 3 31 31 H 1.09005 * 109.46810 * 149.97716 * 1 2 3 32 32 H 1.07998 * 119.99614 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99954 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.00412 * 180.20968 * 5 4 3 35 35 H 1.08999 * 117.49340 * 145.02093 * 9 7 6 36 36 H 1.08993 * 117.52005 * 359.97438 * 9 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 38 38 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 39 39 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 40 40 H 1.09005 * 112.94291 * 45.33055 * 16 15 14 41 41 H 1.08999 * 113.76486 * 336.34486 * 17 16 15 42 42 H 1.08998 * 113.77540 * 107.74500 * 17 16 15 43 43 H 0.96999 * 120.00311 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.77298 * 221.15734 * 27 18 17 45 45 H 1.09002 * 113.87696 * 89.76910 * 27 18 17 46 46 H 1.07993 * 120.00152 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0039 6 6 3.5806 -1.1969 -0.0014 7 6 4.3342 -2.5021 -0.0019 8 1 3.8022 -3.3524 0.4247 9 6 5.8496 -2.4429 0.2005 10 6 5.2743 -2.7745 -1.1778 11 1 5.3483 -2.0098 -1.9511 12 6 5.3939 -4.1981 -1.6577 13 8 4.7582 -5.0765 -1.1145 14 7 6.2073 -4.4949 -2.6905 15 6 6.3240 -5.8789 -3.1567 16 6 7.3030 -5.9407 -4.3308 17 6 6.6506 -5.6624 -5.6972 18 7 7.4744 -6.7806 -6.2031 19 6 7.9654 -7.1303 -7.4327 20 1 8.5621 -8.0239 -7.5416 21 6 7.6962 -6.3363 -8.5390 22 7 6.9687 -5.2475 -8.4063 23 14 8.3654 -6.8137 -10.2164 24 1 9.1463 -8.0713 -10.0981 25 1 7.2369 -7.0182 -11.1597 26 1 9.2455 -5.7310 -10.7247 27 6 7.5572 -7.3670 -4.8514 28 6 2.1981 -1.1969 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1327 0.0010 34 1 5.3517 0.0000 0.0078 35 1 6.3145 -3.2544 0.7603 36 1 6.3019 -1.4602 0.3337 37 1 6.7154 -3.7923 -3.1252 38 1 6.6905 -6.5062 -2.3441 39 1 5.3465 -6.2371 -3.4798 40 1 8.2141 -5.3688 -4.1549 41 1 5.5790 -5.8605 -5.7208 42 1 6.9148 -4.6937 -6.1211 43 1 6.7802 -4.6928 -9.1794 44 1 8.5440 -7.7566 -4.6011 45 1 6.7535 -8.0674 -4.6243 46 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032045348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:39 Heat of formation + Delta-G solvation = 38.764939 kcal Electronic energy + Delta-G solvation = -24520.288245 eV Core-core repulsion = 20990.079639 eV Total energy + Delta-G solvation = -3530.208606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32071 -40.32739 -39.63626 -37.48475 -35.71497 -34.17304 -33.37735 -31.79075 -30.64621 -28.02993 -27.66469 -26.56598 -25.28221 -24.44574 -23.45837 -22.91516 -21.50787 -20.72373 -20.30044 -18.77460 -18.43072 -17.61103 -17.12538 -16.98926 -16.42186 -16.17850 -15.89346 -15.72355 -15.46708 -14.96426 -14.77118 -14.60669 -14.50820 -14.02547 -13.99306 -13.54837 -13.32805 -13.17568 -13.11655 -13.00538 -12.90206 -12.78321 -12.53639 -12.24199 -12.18081 -11.85210 -11.82796 -11.64563 -11.51514 -11.41347 -11.29326 -10.92148 -10.84696 -10.05794 -9.64151 -9.39785 -8.93176 -7.91866 -5.25250 0.38109 0.50054 1.45027 1.46085 1.50148 1.56355 2.15640 2.46546 2.67781 3.09333 3.28965 3.37895 3.52826 3.70115 3.74759 3.88166 3.97456 4.05224 4.08393 4.16235 4.24432 4.26834 4.35138 4.51877 4.55381 4.58902 4.74751 4.77062 4.82390 4.83897 4.85031 4.88665 4.96759 5.02805 5.08678 5.10190 5.19152 5.24675 5.32521 5.43178 5.53939 5.60480 5.63966 5.70268 5.73794 5.92948 6.14702 6.57166 6.91317 7.23854 7.59604 8.55250 9.25210 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.002175 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.360294 B =12871.004779 C =13629.383464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.059 4.059 7 C -0.091 4.091 8 H 0.106 0.894 9 C -0.121 4.121 10 C -0.181 4.181 11 H 0.141 0.859 12 C 0.538 3.462 13 O -0.587 6.587 14 N -0.711 5.711 15 C 0.142 3.858 16 C -0.113 4.113 17 C 0.166 3.834 18 N -0.646 5.646 19 C -0.235 4.235 20 H 0.084 0.916 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.126 3.874 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.009 0.991 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 14.518 21.363 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.110 4.110 8 H 0.124 0.876 9 C -0.158 4.158 10 C -0.202 4.202 11 H 0.159 0.841 12 C 0.326 3.674 13 O -0.468 6.468 14 N -0.361 5.361 15 C 0.017 3.983 16 C -0.133 4.133 17 C 0.040 3.960 18 N -0.373 5.373 19 C -0.363 4.363 20 H 0.102 0.898 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.216 1.216 27 C 0.000 4.000 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.124 0.876 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.249 13.875 21.390 26.251 hybrid contribution 0.084 -0.298 -1.634 1.663 sum -6.165 13.576 19.756 24.751 Atomic orbital electron populations 1.20839 0.89945 1.03339 1.03013 1.20200 0.97256 0.93008 0.99107 1.21359 0.94812 0.97971 1.00984 1.21445 0.94457 0.98694 0.98935 1.21295 1.01081 0.91526 1.00968 1.19177 0.93346 0.93196 1.00216 1.20977 0.92913 0.96554 1.00515 0.87628 1.23255 0.94027 1.04916 0.93607 1.22330 1.08845 0.94169 0.94818 0.84114 1.20113 0.78018 0.90109 0.79185 1.90663 1.47002 1.50575 1.58591 1.45895 1.45763 1.10679 1.33777 1.21188 0.98529 0.82916 0.95668 1.23397 0.98907 0.98416 0.92583 1.22265 0.92101 0.92596 0.89010 1.46432 1.59158 1.27700 1.03969 1.19485 1.25267 1.06822 0.84726 0.89834 1.25650 1.01257 0.97828 1.01529 1.70005 1.43933 1.16639 1.29689 0.84994 0.77199 0.77700 0.79336 1.18936 1.22157 1.21626 1.22695 0.99629 0.94199 0.83447 1.21038 0.93874 0.98212 1.01939 0.90282 0.90392 0.91701 0.84287 0.83696 0.83931 0.87788 0.84632 0.74940 0.90600 0.93221 0.87590 0.97288 0.93650 0.94279 0.91834 0.93675 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.65 5.88 -19.86 -0.12 -1.77 16 3 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 4 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 5 C -0.13 -2.04 9.30 22.27 0.21 -1.83 16 6 C -0.06 -1.15 5.61 -19.86 -0.11 -1.26 16 7 C -0.09 -1.84 5.55 -11.54 -0.06 -1.91 16 8 H 0.11 2.57 7.67 -2.39 -0.02 2.55 16 9 C -0.12 -1.86 9.56 30.59 0.29 -1.57 16 10 C -0.18 -3.65 5.82 -11.54 -0.07 -3.72 16 11 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 12 C 0.54 14.93 7.61 87.66 0.67 15.59 16 13 O -0.59 -20.93 16.26 -3.03 -0.05 -20.97 16 14 N -0.71 -18.67 5.56 -463.06 -2.57 -21.24 16 15 C 0.14 4.27 5.51 86.38 0.48 4.75 16 16 C -0.11 -3.91 3.93 -10.13 -0.04 -3.95 16 17 C 0.17 7.74 7.08 86.44 0.61 8.35 16 18 N -0.65 -33.22 3.70 -716.09 -2.65 -35.87 16 19 C -0.23 -13.27 10.70 84.03 0.90 -12.37 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 22 N -0.95 -57.72 11.39 21.65 0.25 -57.47 16 23 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 C 0.13 4.90 8.51 86.49 0.74 5.64 16 28 C -0.13 -2.68 9.39 22.27 0.21 -2.47 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 31 H 0.06 0.85 8.09 -2.38 -0.02 0.83 16 32 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.14 1.55 6.02 -2.91 -0.02 1.54 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.14 1.32 6.17 -2.39 -0.01 1.31 16 37 H 0.41 9.10 8.47 -92.71 -0.79 8.32 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.71 7.87 -2.39 -0.02 1.69 16 40 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 41 H 0.01 0.46 7.92 -2.39 -0.02 0.44 16 42 H 0.05 2.35 7.17 -2.39 -0.02 2.33 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 46 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -73.59 382.24 2.51 -71.08 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.19 Total: 20.55 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.32 Total: -4.02 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.98 Total: -114.59 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.59 2.51 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032045348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.846 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds