Wall clock time and date at job start Tue Mar 31 2020 10:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38235 * 119.99899 * 359.95697 * 5 4 3 7 7 C 1.50703 * 120.00293 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99906 * 0.04581 * 8 2 1 10 10 C 1.50692 * 109.47242 * 269.93472 * 9 8 2 11 11 O 1.21283 * 120.00141 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00190 * 180.02562 * 10 9 8 13 13 C 1.47865 * 126.94179 * 359.67854 * 12 10 9 14 14 C 1.56000 * 105.11627 * 181.87915 * 13 12 10 15 15 H 1.08998 * 116.81639 * 159.41184 * 14 13 12 16 16 C 1.57088 * 99.47228 * 33.16401 * 14 13 12 17 17 C 1.49288 * 126.94892 * 179.97438 * 12 10 9 18 18 H 1.09005 * 116.14742 * 15.83536 * 17 12 10 19 19 C 1.56020 * 104.09362 * 246.69750 * 17 12 10 20 20 N 1.47865 * 105.10182 * 288.76302 * 19 17 12 21 21 C 1.36932 * 126.94595 * 182.01992 * 20 19 17 22 22 H 1.08005 * 120.00051 * 179.97438 * 21 20 19 23 23 C 1.38817 * 120.00222 * 359.97438 * 21 20 19 24 24 N 1.31625 * 119.99425 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00063 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47382 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46994 * 120.00252 * 25 23 21 28 28 H 1.48505 * 109.46786 * 239.99699 * 25 23 21 29 29 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 30 30 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 31 31 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 32 32 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 33 33 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00371 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46764 * 89.99876 * 7 6 5 36 36 H 1.08993 * 109.47236 * 209.99737 * 7 6 5 37 37 H 1.09003 * 109.46896 * 330.00284 * 7 6 5 38 38 H 1.09009 * 109.47217 * 29.93273 * 9 8 2 39 39 H 1.09000 * 109.46819 * 149.92759 * 9 8 2 40 40 H 1.09003 * 110.31867 * 300.90859 * 13 12 10 41 41 H 1.08999 * 110.31817 * 63.09889 * 13 12 10 42 42 H 1.08999 * 112.36331 * 191.51620 * 16 14 13 43 43 H 1.08999 * 112.36914 * 64.07713 * 16 14 13 44 44 H 1.09001 * 110.31404 * 47.67187 * 19 17 12 45 45 H 1.09000 * 110.31576 * 169.75888 * 19 17 12 46 46 H 0.96994 * 119.99353 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0030 7 6 4.3341 -2.5021 0.0048 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0041 10 6 1.1941 -2.9357 1.4253 11 8 1.5888 -2.2525 2.3464 12 7 0.5321 -4.0833 1.6731 13 6 -0.0182 -5.0251 0.6747 14 6 -0.7161 -6.1421 1.5107 15 1 -1.4693 -6.7412 0.9990 16 6 -1.2126 -5.2821 2.7279 17 6 0.2009 -4.6575 3.0107 18 1 0.2846 -3.9781 3.8591 19 6 1.0525 -5.9626 3.0854 20 7 0.4117 -6.8957 2.1339 21 6 0.7785 -8.1896 1.8767 22 1 0.2273 -8.7738 1.1546 23 6 1.8588 -8.7506 2.5439 24 7 2.5309 -8.0384 3.4235 25 14 2.3587 -10.5160 2.1935 26 1 1.4491 -11.0947 1.1724 27 1 3.7543 -10.5439 1.6867 28 1 2.2700 -11.3129 3.4435 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6581 2.1325 0.0040 33 1 4.1204 2.1326 0.0001 34 1 5.3518 0.0002 0.0016 35 1 4.5156 -2.8154 1.0329 36 1 3.7451 -3.2624 -0.5081 37 1 5.2866 -2.3724 -0.5091 38 1 0.4922 -2.3725 -0.5096 39 1 2.0338 -3.2623 -0.5092 40 1 -0.7426 -4.5193 0.0363 41 1 0.7849 -5.4512 0.0734 42 1 -1.5665 -5.8985 3.5542 43 1 -1.9466 -4.5319 2.4338 44 1 2.0805 -5.7615 2.7840 45 1 1.0282 -6.3732 4.0948 46 1 3.2860 -8.4303 3.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032427528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:34 Heat of formation + Delta-G solvation = 40.427929 kcal Electronic energy + Delta-G solvation = -26861.087528 eV Core-core repulsion = 23330.951035 eV Total energy + Delta-G solvation = -3530.136493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34914 -39.50235 -37.59152 -33.63403 -33.52927 -33.20903 -31.52784 -29.38549 -28.64523 -28.33994 -26.59926 -26.41909 -25.19362 -23.48666 -21.51928 -20.63375 -20.13913 -19.81260 -18.38086 -17.19897 -16.40127 -16.21134 -16.05076 -15.55763 -14.86534 -14.49388 -14.42761 -14.01702 -13.68557 -13.29872 -13.21370 -13.13997 -12.88028 -12.76498 -12.64428 -12.22066 -12.18705 -11.88908 -11.67894 -11.57925 -11.41203 -11.31338 -11.02794 -10.89026 -10.84215 -10.80932 -10.72909 -10.59550 -10.24653 -10.06953 -9.66036 -9.44494 -8.74059 -8.46629 -8.44490 -7.97616 -6.94696 -5.78788 -3.13511 1.42611 1.46994 3.09322 3.35266 3.40402 3.40800 3.43653 3.86150 4.39882 4.71710 4.82607 4.90128 4.96999 5.01612 5.17403 5.18972 5.21659 5.31790 5.37195 5.43275 5.54065 5.54994 5.58112 5.62620 5.68905 5.71413 5.77138 5.85614 5.86689 5.91431 5.99640 6.15664 6.22354 6.29125 6.32578 6.40111 6.49153 6.54956 6.58156 6.60963 6.69884 6.77269 7.11357 7.41315 7.48233 7.70671 8.07418 8.13572 8.65256 9.08228 9.69134 10.38287 11.33207 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.003710 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.224927 B = 7544.382753 C = 8369.806904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.064 4.064 7 C -0.120 4.120 8 C -0.060 4.060 9 C -0.104 4.104 10 C 0.531 3.469 11 O -0.546 6.546 12 N -0.608 5.608 13 C 0.084 3.916 14 C 0.141 3.859 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.112 0.888 19 C 0.175 3.825 20 N -0.597 5.597 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 14.423 -8.794 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.177 4.177 8 C -0.061 4.061 9 C -0.143 4.143 10 C 0.319 3.681 11 O -0.424 6.424 12 N -0.342 5.342 13 C -0.042 4.042 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.130 0.870 19 C 0.050 3.950 20 N -0.321 5.321 21 C -0.359 4.359 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.294 14.650 -8.246 17.131 hybrid contribution 0.503 -0.924 -0.145 1.062 sum -2.791 13.726 -8.391 16.328 Atomic orbital electron populations 1.20811 0.91536 1.02972 1.01855 1.19664 0.95782 0.92542 0.98940 1.20891 0.94235 0.97090 1.02535 1.21026 0.94274 0.97711 1.00503 1.20924 0.99506 0.91940 1.02199 1.19725 0.93031 0.95508 0.98123 1.20887 0.99509 0.94203 1.03057 1.19020 0.92810 0.93262 1.00969 1.20716 1.01783 0.96074 0.95751 1.19922 0.77777 0.79715 0.90652 1.90684 1.51491 1.53812 1.46395 1.49234 1.55008 1.20866 1.09131 1.23264 0.97887 0.91279 0.91767 1.23155 0.90877 0.90408 0.92393 0.87599 1.24164 0.95429 0.99113 1.00413 1.24326 0.95709 0.95074 0.85326 0.87013 1.21913 0.94075 0.84510 0.94551 1.45238 1.31336 1.10060 1.45502 1.19091 1.10871 0.86312 1.19676 0.90106 1.24823 0.98159 0.98394 0.98870 1.69935 1.22046 1.35446 1.29072 0.86053 0.78137 0.84151 0.77425 1.20453 1.21781 1.21738 0.91268 0.91532 0.91578 0.86423 0.86408 0.86317 0.90583 0.91311 0.91657 0.88494 0.88001 0.92863 0.91141 0.89850 0.91707 0.93524 0.92734 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.20 36.01 0.33 -0.95 16 2 C -0.07 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.59 9.70 -39.58 -0.38 -1.97 16 4 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 5 C -0.13 -1.65 9.70 -39.59 -0.38 -2.03 16 6 C -0.06 -0.92 5.88 -104.62 -0.62 -1.54 16 7 C -0.12 -1.64 9.61 36.01 0.35 -1.29 16 8 C -0.06 -0.89 4.37 -104.62 -0.46 -1.34 16 9 C -0.10 -1.49 4.03 -29.04 -0.12 -1.60 16 10 C 0.53 9.62 7.49 -10.99 -0.08 9.54 16 11 O -0.55 -11.77 16.38 5.55 0.09 -11.68 16 12 N -0.61 -11.02 2.95 -156.78 -0.46 -11.48 16 13 C 0.08 1.37 6.01 -1.69 -0.01 1.36 16 14 C 0.14 2.53 5.52 -62.57 -0.35 2.19 16 15 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 16 C -0.15 -2.53 6.81 -22.28 -0.15 -2.68 16 17 C 0.10 1.90 5.24 -62.54 -0.33 1.57 16 18 H 0.11 2.14 8.05 -51.93 -0.42 1.73 16 19 C 0.17 4.16 4.77 -1.68 -0.01 4.15 16 20 N -0.60 -14.11 3.03 -156.36 -0.47 -14.58 16 21 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 22 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.54 10.56 55.49 0.59 -25.96 16 25 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.92 5.95 -51.93 -0.31 0.61 16 37 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.10 1.16 6.70 -51.92 -0.35 0.82 16 39 H 0.10 1.39 5.95 -51.93 -0.31 1.08 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 45 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -32.04 365.52 -10.36 -42.40 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.11 Total: 3.76 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.47 Total: -4.42 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.35 Total: -52.02 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.04 -10.36 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032427528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.829 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds