Wall clock time and date at job start Tue Mar 31 2020 10:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38235 * 119.99899 * 359.95697 * 5 4 3 7 7 C 1.50703 * 120.00293 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99906 * 0.04581 * 8 2 1 10 10 C 1.50692 * 109.47242 * 269.93472 * 9 8 2 11 11 O 1.21283 * 120.00141 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00190 * 180.02562 * 10 9 8 13 13 C 1.47865 * 126.94179 * 359.67854 * 12 10 9 14 14 C 1.56000 * 105.11627 * 181.87915 * 13 12 10 15 15 H 1.08998 * 116.81639 * 159.41184 * 14 13 12 16 16 C 1.57088 * 99.47228 * 33.16401 * 14 13 12 17 17 C 1.49288 * 126.94892 * 179.97438 * 12 10 9 18 18 H 1.09005 * 116.14742 * 15.83536 * 17 12 10 19 19 C 1.56020 * 104.09362 * 246.69750 * 17 12 10 20 20 N 1.47865 * 105.10182 * 288.76302 * 19 17 12 21 21 C 1.36932 * 126.94595 * 182.01992 * 20 19 17 22 22 H 1.08005 * 120.00051 * 179.97438 * 21 20 19 23 23 C 1.38817 * 120.00222 * 359.97438 * 21 20 19 24 24 N 1.31625 * 119.99425 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00063 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47382 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46994 * 120.00252 * 25 23 21 28 28 H 1.48505 * 109.46786 * 239.99699 * 25 23 21 29 29 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 30 30 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 31 31 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 32 32 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 33 33 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00371 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46764 * 89.99876 * 7 6 5 36 36 H 1.08993 * 109.47236 * 209.99737 * 7 6 5 37 37 H 1.09003 * 109.46896 * 330.00284 * 7 6 5 38 38 H 1.09009 * 109.47217 * 29.93273 * 9 8 2 39 39 H 1.09000 * 109.46819 * 149.92759 * 9 8 2 40 40 H 1.09003 * 110.31867 * 300.90859 * 13 12 10 41 41 H 1.08999 * 110.31817 * 63.09889 * 13 12 10 42 42 H 1.08999 * 112.36331 * 191.51620 * 16 14 13 43 43 H 1.08999 * 112.36914 * 64.07713 * 16 14 13 44 44 H 1.09001 * 110.31404 * 47.67187 * 19 17 12 45 45 H 1.09000 * 110.31576 * 169.75888 * 19 17 12 46 46 H 0.96994 * 119.99353 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0030 7 6 4.3341 -2.5021 0.0048 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0041 10 6 1.1941 -2.9357 1.4253 11 8 1.5888 -2.2525 2.3464 12 7 0.5321 -4.0833 1.6731 13 6 -0.0182 -5.0251 0.6747 14 6 -0.7161 -6.1421 1.5107 15 1 -1.4693 -6.7412 0.9990 16 6 -1.2126 -5.2821 2.7279 17 6 0.2009 -4.6575 3.0107 18 1 0.2846 -3.9781 3.8591 19 6 1.0525 -5.9626 3.0854 20 7 0.4117 -6.8957 2.1339 21 6 0.7785 -8.1896 1.8767 22 1 0.2273 -8.7738 1.1546 23 6 1.8588 -8.7506 2.5439 24 7 2.5309 -8.0384 3.4235 25 14 2.3587 -10.5160 2.1935 26 1 1.4491 -11.0947 1.1724 27 1 3.7543 -10.5439 1.6867 28 1 2.2700 -11.3129 3.4435 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6581 2.1325 0.0040 33 1 4.1204 2.1326 0.0001 34 1 5.3518 0.0002 0.0016 35 1 4.5156 -2.8154 1.0329 36 1 3.7451 -3.2624 -0.5081 37 1 5.2866 -2.3724 -0.5091 38 1 0.4922 -2.3725 -0.5096 39 1 2.0338 -3.2623 -0.5092 40 1 -0.7426 -4.5193 0.0363 41 1 0.7849 -5.4512 0.0734 42 1 -1.5665 -5.8985 3.5542 43 1 -1.9466 -4.5319 2.4338 44 1 2.0805 -5.7615 2.7840 45 1 1.0282 -6.3732 4.0948 46 1 3.2860 -8.4303 3.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032427528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:33 Heat of formation + Delta-G solvation = 23.049970 kcal Electronic energy + Delta-G solvation = -26861.841093 eV Core-core repulsion = 23330.951035 eV Total energy + Delta-G solvation = -3530.890058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71736 -40.69960 -39.03794 -35.44500 -34.49240 -34.32541 -33.21120 -30.95404 -30.24717 -29.57224 -27.54737 -27.47664 -26.96411 -25.15066 -22.83920 -21.60385 -21.47026 -21.36123 -19.94797 -18.82254 -17.94699 -17.47323 -17.24818 -16.90926 -16.31114 -16.04010 -15.69092 -15.47683 -15.00562 -14.74271 -14.57885 -14.09724 -13.93014 -13.81039 -13.72957 -13.61108 -13.52917 -13.35234 -13.22969 -13.08831 -12.80990 -12.75151 -12.51859 -12.43193 -12.31064 -12.14338 -11.99292 -11.87432 -11.78404 -11.70778 -11.52427 -10.97084 -10.71770 -9.50726 -9.49140 -9.41388 -8.90605 -7.84262 -5.20120 0.42869 0.49175 1.47070 1.47206 1.57618 1.67868 2.05100 2.48604 2.83902 3.33742 3.39873 3.64846 3.70704 3.85455 3.91028 3.93675 4.02197 4.06836 4.10216 4.19793 4.22687 4.38153 4.46406 4.52229 4.61510 4.69561 4.72822 4.74943 4.80033 4.82960 4.87170 4.94076 4.96627 4.99363 5.03108 5.15355 5.25665 5.27951 5.34655 5.45903 5.54768 5.60054 5.65132 5.66062 5.76824 6.10055 6.17057 6.70861 7.03123 7.22478 7.71461 8.42033 9.27013 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.003710 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.224927 B = 7544.382753 C = 8369.806904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.085 4.085 9 C -0.092 4.092 10 C 0.528 3.472 11 O -0.587 6.587 12 N -0.611 5.611 13 C 0.090 3.910 14 C 0.135 3.865 15 H 0.137 0.863 16 C -0.128 4.128 17 C 0.100 3.900 18 H 0.108 0.892 19 C 0.189 3.811 20 N -0.617 5.617 21 C -0.227 4.227 22 H 0.097 0.903 23 C -0.072 4.072 24 N -0.958 5.958 25 Si 0.976 3.024 26 H -0.257 1.257 27 H -0.300 1.300 28 H -0.298 1.298 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.104 0.896 44 H -0.006 1.006 45 H 0.014 0.986 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 15.810 -11.355 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.158 4.158 6 C -0.088 4.088 7 C -0.173 4.173 8 C -0.085 4.085 9 C -0.131 4.131 10 C 0.318 3.682 11 O -0.468 6.468 12 N -0.344 5.344 13 C -0.034 4.034 14 C 0.029 3.971 15 H 0.155 0.845 16 C -0.168 4.168 17 C -0.004 4.004 18 H 0.126 0.874 19 C 0.063 3.937 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.115 0.885 23 C -0.265 4.265 24 N -0.608 5.608 25 Si 0.805 3.195 26 H -0.181 1.181 27 H -0.228 1.228 28 H -0.226 1.226 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.013 0.987 45 H 0.032 0.968 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.775 16.038 -10.863 20.213 hybrid contribution 1.254 -1.275 0.647 1.902 sum -4.520 14.763 -10.216 18.514 Atomic orbital electron populations 1.20841 0.89915 1.02865 1.03291 1.20037 0.97207 0.92495 0.98476 1.21280 0.94625 0.97817 1.01636 1.21418 0.94599 0.98455 0.99152 1.21215 1.00537 0.91940 1.02113 1.19940 0.93521 0.96079 0.99269 1.20835 1.00689 0.94356 1.01396 1.19203 0.93089 0.93880 1.02374 1.20676 1.03320 0.96157 0.92963 1.20626 0.76514 0.79121 0.91916 1.90656 1.52880 1.55173 1.48067 1.49321 1.55158 1.21148 1.08821 1.23222 0.98195 0.90756 0.91232 1.23598 0.89867 0.90520 0.93136 0.84515 1.24062 0.94086 0.99150 0.99464 1.24121 0.96806 0.92952 0.86481 0.87432 1.21489 0.92677 0.87039 0.92542 1.45497 1.32989 1.09733 1.45897 1.19591 1.10024 0.87486 1.18493 0.88493 1.25660 0.99027 1.02217 0.99549 1.70183 1.22666 1.37001 1.30909 0.85036 0.77428 0.79843 0.77210 1.18058 1.22797 1.22557 0.88935 0.92779 0.90511 0.83856 0.83624 0.84786 0.93498 0.91482 0.89609 0.85543 0.87728 0.87672 0.92798 0.90335 0.87757 0.98731 0.96768 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.20 71.24 0.66 -1.53 16 2 C -0.08 -2.05 5.88 -19.86 -0.12 -2.17 16 3 C -0.14 -3.00 9.70 22.27 0.22 -2.78 16 4 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.14 -3.49 9.70 22.27 0.22 -3.27 16 6 C -0.09 -2.54 5.88 -19.87 -0.12 -2.65 16 7 C -0.12 -3.29 9.61 71.24 0.68 -2.60 16 8 C -0.09 -2.43 4.37 -19.87 -0.09 -2.52 16 9 C -0.09 -2.52 4.03 29.10 0.12 -2.41 16 10 C 0.53 19.00 7.49 87.65 0.66 19.66 16 11 O -0.59 -25.90 16.38 -3.04 -0.05 -25.95 16 12 N -0.61 -21.62 2.95 -768.32 -2.26 -23.89 16 13 C 0.09 2.70 6.01 87.16 0.52 3.23 16 14 C 0.14 4.50 5.52 46.93 0.26 4.76 16 15 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 16 C -0.13 -3.96 6.81 33.47 0.23 -3.73 16 17 C 0.10 3.89 5.24 46.94 0.25 4.13 16 18 H 0.11 4.26 8.05 -2.38 -0.02 4.24 16 19 C 0.19 9.48 4.77 87.16 0.42 9.90 16 20 N -0.62 -29.28 3.03 -648.61 -1.96 -31.24 16 21 C -0.23 -11.90 10.37 84.04 0.87 -11.03 16 22 H 0.10 4.67 7.83 -2.91 -0.02 4.64 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 24 N -0.96 -58.63 10.56 21.65 0.23 -58.41 16 25 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.18 6.36 -2.39 -0.02 1.17 16 31 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.85 5.95 -2.39 -0.01 1.83 16 37 H 0.09 1.96 8.09 -2.39 -0.02 1.95 16 38 H 0.13 2.64 6.70 -2.38 -0.02 2.62 16 39 H 0.10 2.79 5.95 -2.39 -0.01 2.77 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H -0.01 -0.33 7.68 -2.39 -0.02 -0.35 16 45 H 0.01 0.81 7.46 -2.39 -0.02 0.79 16 46 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -74.91 365.52 4.40 -70.50 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.97 Total: 20.81 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.46 Total: 1.06 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.00 Total: -113.53 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.91 4.40 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032427528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.554 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds