Wall clock time and date at job start Tue Mar 31 2020 11:50:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 C 1.52999 * 109.47262 * 2 1
4 4 C 1.50702 * 109.47349 * 240.00424 * 2 1 3
5 5 C 1.37979 * 120.07059 * 54.48579 * 4 2 1
6 6 C 1.38346 * 120.14492 * 179.72514 * 5 4 2
7 7 C 1.38386 * 120.28899 * 0.55457 * 6 5 4
8 8 C 1.37935 * 120.14379 * 359.72502 * 7 6 5
9 9 C 1.39550 * 120.07782 * 234.76913 * 4 2 1
10 10 C 1.47850 * 120.14153 * 0.02562 * 9 4 2
11 11 O 1.21548 * 120.00223 * 311.67135 * 10 9 4
12 12 N 1.34783 * 119.99729 * 131.66296 * 10 9 4
13 13 C 1.47869 * 126.94167 * 4.87869 * 12 10 9
14 14 C 1.56024 * 105.09933 * 181.97394 * 13 12 10
15 15 H 1.08999 * 116.24246 * 158.83575 * 14 13 12
16 16 C 1.57078 * 99.60667 * 32.80661 * 14 13 12
17 17 C 1.49283 * 126.94085 * 184.55421 * 12 10 9
18 18 H 1.08997 * 116.15584 * 15.86956 * 17 12 10
19 19 C 1.58438 * 103.70407 * 246.54918 * 17 12 10
20 20 N 1.47875 * 104.83166 * 288.55174 * 19 17 12
21 21 C 1.36934 * 126.94000 * 182.30012 * 20 19 17
22 22 H 1.08003 * 119.99575 * 179.97438 * 21 20 19
23 23 C 1.38810 * 120.00267 * 0.02562 * 21 20 19
24 24 N 1.31613 * 120.00262 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99766 * 179.97438 * 23 21 20
26 26 H 1.48496 * 109.47587 * 359.97438 * 25 23 21
27 27 H 1.48505 * 109.47024 * 119.99726 * 25 23 21
28 28 H 1.48498 * 109.47087 * 239.99632 * 25 23 21
29 29 H 1.09000 * 109.47507 * 299.99631 * 1 2 3
30 30 H 1.09006 * 109.47384 * 59.99433 * 1 2 3
31 31 H 1.09002 * 109.47635 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47461 * 120.00550 * 2 1 3
33 33 H 1.09006 * 109.46678 * 60.00502 * 3 2 1
34 34 H 1.09004 * 109.47337 * 179.97438 * 3 2 1
35 35 H 1.08994 * 109.47815 * 300.00424 * 3 2 1
36 36 H 1.08002 * 119.92924 * 0.02562 * 5 4 2
37 37 H 1.07998 * 119.85620 * 180.25900 * 6 5 4
38 38 H 1.07995 * 119.92466 * 179.74581 * 7 6 5
39 39 H 1.07997 * 120.07231 * 179.97438 * 8 7 6
40 40 H 1.08994 * 110.31553 * 300.87776 * 13 12 10
41 41 H 1.09004 * 110.31640 * 63.07147 * 13 12 10
42 42 H 1.08995 * 112.37423 * 64.27217 * 16 14 13
43 43 H 1.09003 * 112.36763 * 191.71517 * 16 14 13
44 44 H 1.08997 * 110.19146 * 169.85866 * 19 17 12
45 45 H 1.08998 * 110.69818 * 47.49632 * 19 17 12
46 46 H 0.96995 * 120.00445 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0323 -0.7103 -1.2305
5 6 1.6088 -0.3100 -2.4812
6 6 2.0734 -0.9573 -3.6122
7 6 2.9561 -2.0169 -3.4969
8 6 3.3828 -2.4307 -2.2522
9 6 2.9222 -1.7781 -1.1073
10 6 3.3749 -2.2168 0.2301
11 8 3.7748 -1.3986 1.0350
12 7 3.3439 -3.5241 0.5567
13 6 2.9850 -4.6530 -0.3283
14 6 3.0681 -5.9213 0.5767
15 1 2.5118 -6.7942 0.2353
16 6 2.6203 -5.2959 1.9462
17 6 3.6714 -4.1254 1.8833
18 1 3.7034 -3.4373 2.7280
19 6 4.9854 -4.9645 1.6009
20 7 4.5320 -6.1176 0.7938
21 6 5.2999 -7.1557 0.3379
22 1 4.8494 -7.9447 -0.2461
23 6 6.6569 -7.1945 0.6271
24 7 7.2058 -6.2334 1.3392
25 14 7.7042 -8.6111 0.0057
26 1 6.8543 -9.5545 -0.7642
27 1 8.7796 -8.0837 -0.8722
28 1 8.3111 -9.3215 1.1599
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5139 0.8899
33 1 1.6766 1.9563 0.8901
34 1 3.1300 1.4425 0.0005
35 1 1.6766 1.9564 -0.8899
36 1 0.9168 0.5136 -2.5778
37 1 1.7421 -0.6374 -4.5890
38 1 3.3119 -2.5206 -4.3835
39 1 4.0714 -3.2579 -2.1636
40 1 1.9723 -4.5268 -0.7109
41 1 3.6950 -4.7287 -1.1520
42 1 1.5920 -4.9355 1.9213
43 1 2.7981 -5.9670 2.7866
44 1 5.4217 -5.3073 2.5391
45 1 5.7083 -4.3714 1.0408
46 1 8.1540 -6.2607 1.5417
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001032434994.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:50:05
Heat of formation + Delta-G solvation = 42.663848 kcal
Electronic energy + Delta-G solvation = -27112.289104 eV
Core-core repulsion = 23582.249568 eV
Total energy + Delta-G solvation = -3530.039536 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.47988 -39.20324 -37.38803 -35.37292 -33.63915 -31.92685 -30.71733 -29.78735
-28.81531 -28.51869 -27.13415 -25.27782 -24.26825 -23.41552 -22.78864 -20.77689
-19.87659 -19.82348 -18.63630 -17.50400 -16.45764 -16.33362 -15.62030 -15.55051
-15.13961 -14.40344 -14.21952 -13.91664 -13.87061 -13.68870 -13.50481 -13.26642
-13.00330 -12.43302 -12.30867 -12.12970 -12.07929 -11.98895 -11.67610 -11.53864
-11.29479 -11.14230 -11.02934 -10.88602 -10.80423 -10.68780 -10.62247 -10.59518
-10.22387 -10.07461 -9.66057 -9.42000 -8.87911 -8.72800 -8.69201 -7.97260
-6.95075 -5.79021 -3.13748 1.10261 1.38741 3.07094 3.35407 3.37464
3.40670 3.43870 3.83236 4.39855 4.62753 4.72994 4.79552 5.02093
5.08927 5.12486 5.17673 5.21551 5.33218 5.35354 5.45088 5.52274
5.54416 5.59739 5.60761 5.69207 5.79062 5.84327 5.86699 5.94473
5.99203 6.07481 6.14037 6.20280 6.28706 6.29856 6.39074 6.40967
6.47061 6.50061 6.56823 6.64800 6.71000 6.93815 7.40672 7.47601
7.70343 8.05482 8.08864 8.55703 9.08090 9.68849 10.38171 11.33074
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.019168 B = 0.003963 C = 0.003669
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1460.411331 B = 7064.430496 C = 7630.013540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.071 4.071
3 C -0.134 4.134
4 C -0.030 4.030
5 C -0.126 4.126
6 C -0.104 4.104
7 C -0.130 4.130
8 C -0.084 4.084
9 C -0.115 4.115
10 C 0.572 3.428
11 O -0.545 6.545
12 N -0.599 5.599
13 C 0.084 3.916
14 C 0.141 3.859
15 H 0.105 0.895
16 C -0.151 4.151
17 C 0.095 3.905
18 H 0.114 0.886
19 C 0.177 3.823
20 N -0.597 5.597
21 C -0.232 4.232
22 H 0.081 0.919
23 C -0.005 4.005
24 N -0.919 5.919
25 Si 0.912 3.088
26 H -0.279 1.279
27 H -0.291 1.291
28 H -0.290 1.290
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.053 0.947
32 H 0.096 0.904
33 H 0.056 0.944
34 H 0.059 0.941
35 H 0.050 0.950
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.125 0.875
39 H 0.132 0.868
40 H 0.054 0.946
41 H 0.073 0.927
42 H 0.066 0.934
43 H 0.084 0.916
44 H 0.056 0.944
45 H 0.048 0.952
46 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.149 9.910 -6.226 18.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.090 4.090
3 C -0.192 4.192
4 C -0.030 4.030
5 C -0.144 4.144
6 C -0.123 4.123
7 C -0.148 4.148
8 C -0.102 4.102
9 C -0.118 4.118
10 C 0.360 3.640
11 O -0.425 6.425
12 N -0.332 5.332
13 C -0.042 4.042
14 C 0.032 3.968
15 H 0.123 0.877
16 C -0.190 4.190
17 C -0.007 4.007
18 H 0.132 0.868
19 C 0.052 3.948
20 N -0.322 5.322
21 C -0.359 4.359
22 H 0.099 0.901
23 C -0.202 4.202
24 N -0.565 5.565
25 Si 0.743 3.257
26 H -0.204 1.204
27 H -0.218 1.218
28 H -0.217 1.217
29 H 0.076 0.924
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.114 0.886
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.069 0.931
36 H 0.142 0.858
37 H 0.140 0.860
38 H 0.143 0.857
39 H 0.150 0.850
40 H 0.072 0.928
41 H 0.091 0.909
42 H 0.084 0.916
43 H 0.103 0.897
44 H 0.074 0.926
45 H 0.066 0.934
46 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -13.645 10.317 -5.817 18.068
hybrid contribution 0.794 -0.743 -0.537 1.213
sum -12.851 9.574 -6.355 17.239
Atomic orbital electron populations
1.21864 0.94641 1.01787 1.01637 1.20340 0.95340 0.96738 0.96546
1.21731 1.01815 0.94485 1.01136 1.19832 0.94547 0.93447 0.95213
1.20879 1.01170 1.00688 0.91616 1.21242 0.96925 0.95706 0.98378
1.21076 0.98639 0.97784 0.97289 1.21476 0.98455 0.98625 0.91678
1.19877 1.00431 0.97900 0.93569 1.17880 0.78288 0.81140 0.86654
1.90732 1.48016 1.52025 1.51679 1.49155 1.65498 1.04609 1.13898
1.23411 0.98508 0.87719 0.94524 1.23160 0.87742 0.93598 0.92307
0.87702 1.24181 0.97151 0.97752 0.99938 1.24911 0.98059 0.92767
0.84995 0.86782 1.22372 0.89708 0.86665 0.96068 1.45224 1.01546
1.24147 1.61234 1.19092 0.89739 0.99253 1.27855 0.90078 1.24816
0.96759 0.98410 1.00229 1.69911 1.11419 1.32785 1.42433 0.86049
0.80404 0.81336 0.77956 1.20445 1.21775 1.21722 0.92376 0.92704
0.92736 0.88592 0.92528 0.92143 0.93073 0.85831 0.86007 0.85672
0.84994 0.92814 0.90922 0.91562 0.89750 0.92638 0.93358 0.93586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.49 8.94 37.15 0.33 -1.16 16
2 C -0.07 -0.94 2.72 -91.78 -0.25 -1.19 16
3 C -0.13 -1.59 9.06 37.16 0.34 -1.25 16
4 C -0.03 -0.41 4.81 -104.23 -0.50 -0.91 16
5 C -0.13 -1.45 8.75 -39.64 -0.35 -1.79 16
6 C -0.10 -1.13 10.04 -39.49 -0.40 -1.52 16
7 C -0.13 -1.57 10.03 -39.64 -0.40 -1.96 16
8 C -0.08 -1.24 8.59 -39.19 -0.34 -1.58 16
9 C -0.11 -1.86 5.43 -104.97 -0.57 -2.43 16
10 C 0.57 10.88 6.66 -12.32 -0.08 10.80 16
11 O -0.54 -11.73 15.45 5.32 0.08 -11.64 16
12 N -0.60 -11.21 2.95 -156.15 -0.46 -11.67 16
13 C 0.08 1.44 5.09 -1.67 -0.01 1.43 16
14 C 0.14 2.59 5.47 -62.55 -0.34 2.25 16
15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16
16 C -0.15 -2.53 6.86 -22.10 -0.15 -2.68 16
17 C 0.10 1.84 5.34 -60.96 -0.33 1.51 16
18 H 0.11 2.14 8.07 -51.93 -0.42 1.72 16
19 C 0.18 4.23 4.88 -0.28 0.00 4.23 16
20 N -0.60 -14.18 3.02 -154.76 -0.47 -14.65 16
21 C -0.23 -6.08 10.37 -15.06 -0.16 -6.23 16
22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16
23 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16
24 N -0.92 -26.62 10.56 55.49 0.59 -26.04 16
25 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16
26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.05 0.49 7.10 -51.93 -0.37 0.12 16
31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.10 1.54 5.39 -51.93 -0.28 1.26 16
33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16
36 H 0.12 1.14 7.10 -52.49 -0.37 0.77 16
37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
38 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
39 H 0.13 2.08 6.15 -52.49 -0.32 1.75 16
40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.07 1.35 6.29 -51.93 -0.33 1.02 16
42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16
44 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16
45 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16
46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 361.77 15.07 5.45 5.45
Total: -1.00 -30.93 361.77 -10.18 -41.11
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: -7.05 Total: 3.66 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: -3.29 Total: -2.73 kcal
Atomic # 7 Polarization: -52.01 SS G_CDS: -0.34 Total: -52.35 kcal
Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.64 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -30.93 -10.18 -41.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032434994.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.774 kcal
(2) G-P(sol) polarization free energy of solvation -30.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds