Wall clock time and date at job start Tue Mar 31 2020 11:50:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 C 1.52999 * 109.47262 * 2 1
4 4 C 1.50702 * 109.47349 * 240.00424 * 2 1 3
5 5 C 1.37979 * 120.07059 * 54.48579 * 4 2 1
6 6 C 1.38346 * 120.14492 * 179.72514 * 5 4 2
7 7 C 1.38386 * 120.28899 * 0.55457 * 6 5 4
8 8 C 1.37935 * 120.14379 * 359.72502 * 7 6 5
9 9 C 1.39550 * 120.07782 * 234.76913 * 4 2 1
10 10 C 1.47850 * 120.14153 * 0.02562 * 9 4 2
11 11 O 1.21548 * 120.00223 * 311.67135 * 10 9 4
12 12 N 1.34783 * 119.99729 * 131.66296 * 10 9 4
13 13 C 1.47869 * 126.94167 * 4.87869 * 12 10 9
14 14 C 1.56024 * 105.09933 * 181.97394 * 13 12 10
15 15 H 1.08999 * 116.24246 * 158.83575 * 14 13 12
16 16 C 1.57078 * 99.60667 * 32.80661 * 14 13 12
17 17 C 1.49283 * 126.94085 * 184.55421 * 12 10 9
18 18 H 1.08997 * 116.15584 * 15.86956 * 17 12 10
19 19 C 1.58438 * 103.70407 * 246.54918 * 17 12 10
20 20 N 1.47875 * 104.83166 * 288.55174 * 19 17 12
21 21 C 1.36934 * 126.94000 * 182.30012 * 20 19 17
22 22 H 1.08003 * 119.99575 * 179.97438 * 21 20 19
23 23 C 1.38810 * 120.00267 * 0.02562 * 21 20 19
24 24 N 1.31613 * 120.00262 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99766 * 179.97438 * 23 21 20
26 26 H 1.48496 * 109.47587 * 359.97438 * 25 23 21
27 27 H 1.48505 * 109.47024 * 119.99726 * 25 23 21
28 28 H 1.48498 * 109.47087 * 239.99632 * 25 23 21
29 29 H 1.09000 * 109.47507 * 299.99631 * 1 2 3
30 30 H 1.09006 * 109.47384 * 59.99433 * 1 2 3
31 31 H 1.09002 * 109.47635 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47461 * 120.00550 * 2 1 3
33 33 H 1.09006 * 109.46678 * 60.00502 * 3 2 1
34 34 H 1.09004 * 109.47337 * 179.97438 * 3 2 1
35 35 H 1.08994 * 109.47815 * 300.00424 * 3 2 1
36 36 H 1.08002 * 119.92924 * 0.02562 * 5 4 2
37 37 H 1.07998 * 119.85620 * 180.25900 * 6 5 4
38 38 H 1.07995 * 119.92466 * 179.74581 * 7 6 5
39 39 H 1.07997 * 120.07231 * 179.97438 * 8 7 6
40 40 H 1.08994 * 110.31553 * 300.87776 * 13 12 10
41 41 H 1.09004 * 110.31640 * 63.07147 * 13 12 10
42 42 H 1.08995 * 112.37423 * 64.27217 * 16 14 13
43 43 H 1.09003 * 112.36763 * 191.71517 * 16 14 13
44 44 H 1.08997 * 110.19146 * 169.85866 * 19 17 12
45 45 H 1.08998 * 110.69818 * 47.49632 * 19 17 12
46 46 H 0.96995 * 120.00445 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0323 -0.7103 -1.2305
5 6 1.6088 -0.3100 -2.4812
6 6 2.0734 -0.9573 -3.6122
7 6 2.9561 -2.0169 -3.4969
8 6 3.3828 -2.4307 -2.2522
9 6 2.9222 -1.7781 -1.1073
10 6 3.3749 -2.2168 0.2301
11 8 3.7748 -1.3986 1.0350
12 7 3.3439 -3.5241 0.5567
13 6 2.9850 -4.6530 -0.3283
14 6 3.0681 -5.9213 0.5767
15 1 2.5118 -6.7942 0.2353
16 6 2.6203 -5.2959 1.9462
17 6 3.6714 -4.1254 1.8833
18 1 3.7034 -3.4373 2.7280
19 6 4.9854 -4.9645 1.6009
20 7 4.5320 -6.1176 0.7938
21 6 5.2999 -7.1557 0.3379
22 1 4.8494 -7.9447 -0.2461
23 6 6.6569 -7.1945 0.6271
24 7 7.2058 -6.2334 1.3392
25 14 7.7042 -8.6111 0.0057
26 1 6.8543 -9.5545 -0.7642
27 1 8.7796 -8.0837 -0.8722
28 1 8.3111 -9.3215 1.1599
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5139 0.8899
33 1 1.6766 1.9563 0.8901
34 1 3.1300 1.4425 0.0005
35 1 1.6766 1.9564 -0.8899
36 1 0.9168 0.5136 -2.5778
37 1 1.7421 -0.6374 -4.5890
38 1 3.3119 -2.5206 -4.3835
39 1 4.0714 -3.2579 -2.1636
40 1 1.9723 -4.5268 -0.7109
41 1 3.6950 -4.7287 -1.1520
42 1 1.5920 -4.9355 1.9213
43 1 2.7981 -5.9670 2.7866
44 1 5.4217 -5.3073 2.5391
45 1 5.7083 -4.3714 1.0408
46 1 8.1540 -6.2607 1.5417
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001032434994.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:50:04
Heat of formation + Delta-G solvation = 25.874330 kcal
Electronic energy + Delta-G solvation = -27113.017152 eV
Core-core repulsion = 23582.249568 eV
Total energy + Delta-G solvation = -3530.767584 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.85514 -40.50199 -38.83306 -36.35553 -35.45542 -33.52387 -32.07377 -30.76321
-30.41836 -30.22091 -27.99141 -27.04622 -25.78542 -24.39899 -24.22682 -22.18571
-21.42611 -20.96655 -20.14120 -19.07070 -18.07715 -17.65294 -17.02636 -16.92342
-16.43237 -15.96050 -15.70397 -15.33944 -14.90833 -14.90702 -14.64055 -14.50917
-14.36934 -13.86567 -13.66430 -13.41079 -13.29210 -13.20271 -13.02099 -12.92267
-12.84381 -12.77220 -12.56155 -12.29075 -12.16236 -12.06325 -12.00456 -11.90274
-11.72818 -11.59808 -11.53978 -10.91961 -10.69920 -9.91751 -9.69718 -9.51702
-8.93909 -7.86114 -5.22441 0.04118 0.40843 1.46141 1.46539 1.56996
1.69585 1.95191 2.46946 2.79073 3.31074 3.34439 3.51271 3.67940
3.76881 3.82831 3.85292 3.93553 4.09477 4.15435 4.26331 4.30589
4.43392 4.50111 4.52127 4.54275 4.65457 4.77353 4.79784 4.85121
4.89485 4.95562 4.96245 4.99260 5.09264 5.11757 5.18255 5.21285
5.27756 5.39198 5.42265 5.44415 5.50292 5.52824 5.62805 5.66588
5.99483 6.07260 6.59135 7.00817 7.08041 7.68768 8.39620 9.25314
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.019168 B = 0.003963 C = 0.003669
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1460.411331 B = 7064.430496 C = 7630.013540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.074 4.074
3 C -0.130 4.130
4 C -0.037 4.037
5 C -0.120 4.120
6 C -0.089 4.089
7 C -0.129 4.129
8 C -0.099 4.099
9 C -0.144 4.144
10 C 0.566 3.434
11 O -0.582 6.582
12 N -0.604 5.604
13 C 0.094 3.906
14 C 0.136 3.864
15 H 0.136 0.864
16 C -0.127 4.127
17 C 0.098 3.902
18 H 0.115 0.885
19 C 0.190 3.810
20 N -0.615 5.615
21 C -0.229 4.229
22 H 0.097 0.903
23 C -0.071 4.071
24 N -0.959 5.959
25 Si 0.977 3.023
26 H -0.257 1.257
27 H -0.300 1.300
28 H -0.296 1.296
29 H 0.066 0.934
30 H 0.078 0.922
31 H 0.048 0.952
32 H 0.058 0.942
33 H 0.065 0.935
34 H 0.031 0.969
35 H 0.076 0.924
36 H 0.156 0.844
37 H 0.163 0.837
38 H 0.148 0.852
39 H 0.110 0.890
40 H 0.089 0.911
41 H 0.054 0.946
42 H 0.102 0.898
43 H 0.084 0.916
44 H 0.019 0.981
45 H -0.005 1.005
46 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.905 10.285 -8.996 22.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.092 4.092
3 C -0.188 4.188
4 C -0.038 4.038
5 C -0.138 4.138
6 C -0.106 4.106
7 C -0.147 4.147
8 C -0.118 4.118
9 C -0.147 4.147
10 C 0.357 3.643
11 O -0.464 6.464
12 N -0.335 5.335
13 C -0.030 4.030
14 C 0.030 3.970
15 H 0.153 0.847
16 C -0.166 4.166
17 C -0.005 4.005
18 H 0.132 0.868
19 C 0.064 3.936
20 N -0.339 5.339
21 C -0.358 4.358
22 H 0.115 0.885
23 C -0.263 4.263
24 N -0.608 5.608
25 Si 0.806 3.194
26 H -0.181 1.181
27 H -0.228 1.228
28 H -0.224 1.224
29 H 0.085 0.915
30 H 0.097 0.903
31 H 0.067 0.933
32 H 0.076 0.924
33 H 0.084 0.916
34 H 0.050 0.950
35 H 0.095 0.905
36 H 0.174 0.826
37 H 0.180 0.820
38 H 0.166 0.834
39 H 0.128 0.872
40 H 0.107 0.893
41 H 0.073 0.927
42 H 0.120 0.880
43 H 0.103 0.897
44 H 0.037 0.963
45 H 0.013 0.987
46 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -17.466 10.668 -8.617 22.206
hybrid contribution 1.924 -0.786 0.268 2.096
sum -15.541 9.883 -8.349 20.221
Atomic orbital electron populations
1.21815 0.92185 1.01944 1.03226 1.20315 0.97301 0.96781 0.94820
1.21707 0.99995 0.94177 1.02883 1.20043 0.94240 0.92767 0.96746
1.21246 1.00955 1.01095 0.90471 1.21708 0.94967 0.94010 0.99965
1.21361 0.98459 0.98210 0.96633 1.21383 0.98952 0.98676 0.92751
1.19756 1.02891 1.00103 0.91924 1.18505 0.77391 0.80723 0.87686
1.90694 1.49598 1.52925 1.53218 1.49234 1.65422 1.05165 1.13696
1.23276 0.99833 0.86494 0.93372 1.23570 0.84786 0.95138 0.93545
0.84680 1.24084 0.97891 0.95766 0.98831 1.24749 0.96529 0.93392
0.85838 0.86756 1.21943 0.91081 0.86985 0.93604 1.45456 1.04129
1.23354 1.61006 1.19592 0.90110 0.99623 1.26429 0.88495 1.25667
0.98378 1.00930 1.01357 1.70162 1.10864 1.35051 1.44723 0.85014
0.78566 0.78749 0.77043 1.18051 1.22784 1.22387 0.91544 0.90346
0.93274 0.92393 0.91576 0.94958 0.90497 0.82615 0.81978 0.83396
0.87204 0.89305 0.92727 0.87955 0.89735 0.96296 0.98695 0.94723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.45 8.94 71.98 0.64 -1.80 16
2 C -0.07 -1.87 2.72 -11.54 -0.03 -1.90 16
3 C -0.13 -2.93 9.06 71.98 0.65 -2.28 16
4 C -0.04 -0.98 4.81 -19.61 -0.09 -1.07 16
5 C -0.12 -2.28 8.75 22.23 0.19 -2.08 16
6 C -0.09 -1.51 10.04 22.33 0.22 -1.28 16
7 C -0.13 -2.75 10.03 22.23 0.22 -2.53 16
8 C -0.10 -2.91 8.59 22.53 0.19 -2.71 16
9 C -0.14 -4.68 5.43 -20.09 -0.11 -4.79 16
10 C 0.57 22.54 6.66 86.79 0.58 23.12 16
11 O -0.58 -26.78 15.45 -3.87 -0.06 -26.84 16
12 N -0.60 -23.23 2.95 -766.22 -2.26 -25.49 16
13 C 0.09 3.20 5.09 87.17 0.44 3.64 16
14 C 0.14 4.82 5.47 46.93 0.26 5.08 16
15 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16
16 C -0.13 -4.07 6.86 33.60 0.23 -3.84 16
17 C 0.10 3.94 5.34 47.96 0.26 4.20 16
18 H 0.11 4.54 8.07 -2.39 -0.02 4.53 16
19 C 0.19 9.74 4.88 88.06 0.43 10.17 16
20 N -0.62 -29.89 3.02 -643.53 -1.95 -31.84 16
21 C -0.23 -12.17 10.37 84.03 0.87 -11.30 16
22 H 0.10 4.74 7.83 -2.91 -0.02 4.72 16
23 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16
24 N -0.96 -59.12 10.56 21.65 0.23 -58.89 16
25 Si 0.98 45.43 29.55 68.60 2.03 47.45 16
26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16
27 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16
28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16
29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.08 1.05 7.10 -2.38 -0.02 1.03 16
31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
32 H 0.06 1.92 5.39 -2.39 -0.01 1.91 16
33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16
34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16
35 H 0.08 1.30 7.73 -2.39 -0.02 1.28 16
36 H 0.16 1.96 7.10 -2.91 -0.02 1.94 16
37 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16
38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16
39 H 0.11 3.63 6.15 -2.91 -0.02 3.61 16
40 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16
41 H 0.05 2.07 6.29 -2.38 -0.02 2.05 16
42 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
43 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16
44 H 0.02 1.09 7.46 -2.39 -0.02 1.07 16
45 H -0.01 -0.31 7.68 -2.39 -0.02 -0.33 16
46 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16
Total: -1.00 -74.21 361.77 4.39 -69.82
By element:
Atomic # 1 Polarization: 17.73 SS G_CDS: 0.97 Total: 18.69 kcal
Atomic # 6 Polarization: 1.66 SS G_CDS: 5.43 Total: 7.09 kcal
Atomic # 7 Polarization: -112.24 SS G_CDS: -3.98 Total: -116.22 kcal
Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.84 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal
Total: -74.21 4.39 -69.82 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032434994.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.694 kcal
(2) G-P(sol) polarization free energy of solvation -74.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.487 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds