Wall clock time and date at job start Tue Mar 31 2020 10:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.50700 * 120.00266 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 8 8 C 1.50706 * 119.99804 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.46722 * 85.00734 * 8 7 5 10 10 O 1.21280 * 119.99971 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99508 * 179.97438 * 9 8 7 12 12 C 1.47871 * 126.94902 * 359.68862 * 11 9 8 13 13 C 1.56002 * 105.11405 * 181.87236 * 12 11 9 14 14 H 1.08997 * 116.80678 * 159.41701 * 13 12 11 15 15 C 1.57086 * 99.47545 * 33.16019 * 13 12 11 16 16 C 1.49290 * 126.94189 * 179.97438 * 11 9 8 17 17 H 1.09002 * 116.15224 * 16.70302 * 16 11 9 18 18 C 1.56025 * 104.09467 * 246.70196 * 16 11 9 19 19 N 1.47873 * 105.10019 * 288.76463 * 18 16 11 20 20 C 1.36939 * 126.94053 * 181.97655 * 19 18 16 21 21 H 1.08005 * 119.99738 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00090 * 0.03175 * 20 19 18 23 23 N 1.31615 * 120.00263 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47202 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47249 * 119.99709 * 24 22 20 27 27 H 1.48501 * 109.46904 * 239.99755 * 24 22 20 28 28 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 29 29 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 30 30 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 32 32 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 34 34 H 1.08994 * 109.47517 * 89.99651 * 6 5 4 35 35 H 1.08997 * 109.46988 * 210.00044 * 6 5 4 36 36 H 1.09009 * 109.46840 * 329.99292 * 6 5 4 37 37 H 1.09000 * 109.46714 * 205.00159 * 8 7 5 38 38 H 1.08989 * 109.47244 * 325.00654 * 8 7 5 39 39 H 1.08999 * 110.31140 * 300.90251 * 12 11 9 40 40 H 1.09001 * 110.31744 * 63.09243 * 12 11 9 41 41 H 1.08998 * 112.36795 * 191.50656 * 15 13 12 42 42 H 1.09006 * 112.36675 * 64.07555 * 15 13 12 43 43 H 1.08998 * 110.31351 * 47.67191 * 18 16 11 44 44 H 1.09003 * 110.31595 * 169.86121 * 18 16 11 45 45 H 0.96998 * 120.00401 * 179.97438 * 23 22 20 46 46 H 1.07999 * 119.99936 * 0.04181 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 5.7787 0.0002 0.0115 7 6 3.5806 -1.1968 0.0008 8 6 4.3343 -2.5019 0.0001 9 6 4.6882 -2.8783 1.4158 10 8 4.3611 -2.1576 2.3347 11 7 5.3681 -4.0159 1.6606 12 6 5.8348 -5.0043 0.6647 13 6 6.5136 -6.1337 1.4997 14 1 6.6187 -7.1058 1.0179 15 6 5.6125 -6.0820 2.7854 16 6 5.7973 -4.5357 2.9926 17 1 5.3037 -4.0987 3.8607 18 6 7.3547 -4.4514 2.9496 19 7 7.7720 -5.5118 2.0072 20 6 9.0540 -5.8536 1.6682 21 1 9.2313 -6.6518 0.9625 22 6 10.1255 -5.1744 2.2315 23 7 9.9094 -4.2015 3.0912 24 14 11.8742 -5.6412 1.7695 25 1 11.8464 -6.7583 0.7916 26 1 12.5558 -4.4692 1.1636 27 1 12.6107 -6.0676 2.9866 28 6 2.1981 -1.1969 -0.0045 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0101 34 1 6.1381 -0.0021 1.0405 35 1 6.1440 -0.8885 -0.5030 36 1 6.1439 0.8914 -0.4990 37 1 3.7107 -3.2812 -0.4380 38 1 5.2467 -2.3942 -0.5862 39 1 4.9902 -5.4025 0.1024 40 1 6.5588 -4.5484 -0.0106 41 1 6.0293 -6.6635 3.6077 42 1 4.5771 -6.3521 2.5773 43 1 7.6708 -3.4744 2.5841 44 1 7.7714 -4.6391 3.9392 45 1 10.6581 -3.7271 3.4851 46 1 1.6581 -2.1322 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032604164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:42 Heat of formation + Delta-G solvation = 37.955695 kcal Electronic energy + Delta-G solvation = -26520.386237 eV Core-core repulsion = 22990.142540 eV Total energy + Delta-G solvation = -3530.243697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27005 -39.47527 -37.64714 -34.13252 -33.62220 -32.34156 -31.43821 -29.25213 -29.21197 -28.58177 -27.45418 -25.19980 -24.73743 -23.51954 -22.20073 -20.97483 -19.91142 -19.68377 -18.34953 -17.18511 -16.32042 -16.07617 -15.82628 -15.57554 -14.98286 -14.57861 -14.46027 -14.01731 -13.76386 -13.44477 -13.31594 -13.15891 -12.86617 -12.67551 -12.66368 -12.19666 -11.97393 -11.89533 -11.77288 -11.63770 -11.41920 -11.30380 -11.02410 -10.89833 -10.86441 -10.84475 -10.74676 -10.58972 -10.24827 -10.06781 -9.66120 -9.44967 -8.75543 -8.64616 -8.28491 -7.97562 -6.94617 -5.78697 -3.13433 1.41406 1.47485 3.09852 3.35291 3.40158 3.40559 3.43650 3.86066 4.39891 4.70900 4.80547 4.90017 4.92143 5.06488 5.16728 5.17886 5.21768 5.26421 5.39059 5.46956 5.49732 5.52784 5.54933 5.62946 5.64795 5.74228 5.76753 5.77457 5.88721 5.91822 6.02111 6.14002 6.20508 6.28876 6.34395 6.40592 6.48820 6.51745 6.58393 6.62526 6.69891 6.77295 7.11005 7.41328 7.48462 7.70619 8.07451 8.13771 8.65256 9.08254 9.69183 10.38341 11.33261 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.003403 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.751284 B = 8224.853774 C = 8974.355583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.119 4.119 7 C -0.056 4.056 8 C -0.101 4.101 9 C 0.531 3.469 10 O -0.546 6.546 11 N -0.608 5.608 12 C 0.084 3.916 13 C 0.140 3.860 14 H 0.106 0.894 15 C -0.153 4.153 16 C 0.098 3.902 17 H 0.112 0.888 18 C 0.176 3.824 19 N -0.597 5.597 20 C -0.231 4.231 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C -0.104 4.104 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.398 4.512 -7.857 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.069 4.069 6 C -0.176 4.176 7 C -0.057 4.057 8 C -0.141 4.141 9 C 0.319 3.681 10 O -0.425 6.425 11 N -0.342 5.342 12 C -0.042 4.042 13 C 0.032 3.968 14 H 0.124 0.876 15 C -0.192 4.192 16 C -0.004 4.004 17 H 0.130 0.870 18 C 0.051 3.949 19 N -0.322 5.322 20 C -0.359 4.359 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.122 4.122 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.324 5.055 -7.336 17.725 hybrid contribution 1.059 -0.128 -0.230 1.091 sum -14.265 4.928 -7.566 16.882 Atomic orbital electron populations 1.20740 0.91468 1.02582 1.01907 1.19782 0.95790 0.93126 1.01042 1.20925 0.94119 0.97238 1.01585 1.20936 0.94108 0.97292 1.01274 1.19718 0.96052 0.92535 0.98622 1.20868 0.91181 1.02447 1.03063 1.19157 0.93257 0.93361 0.99886 1.20679 1.01805 0.95775 0.95829 1.19934 0.77644 0.79938 0.90581 1.90682 1.54789 1.50643 1.46344 1.49230 1.54233 1.21183 1.09581 1.23268 0.97387 0.91482 0.92053 1.23153 0.86903 0.94220 0.92567 0.87606 1.24182 0.99002 0.95772 1.00291 1.24331 0.98004 0.92559 0.85526 0.87025 1.21896 0.85778 0.92541 0.94716 1.45242 0.99934 1.37776 1.49202 1.19089 0.80595 1.14786 1.21455 0.90106 1.24823 0.97992 0.98255 0.99207 1.69928 1.29678 1.24510 1.32362 0.86053 0.84591 0.77542 0.77576 1.20462 1.21777 1.21744 1.20797 0.93231 0.97469 1.00720 0.91514 0.91722 0.91786 0.86458 0.86242 0.90562 0.91409 0.91752 0.88654 0.87947 0.92851 0.91127 0.89850 0.91718 0.93500 0.92723 0.93636 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 2 C -0.10 -1.19 5.88 -104.63 -0.62 -1.80 16 3 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 5 C -0.07 -1.00 5.88 -104.62 -0.62 -1.62 16 6 C -0.12 -1.66 9.60 36.01 0.35 -1.32 16 7 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 8 C -0.10 -1.44 4.62 -29.03 -0.13 -1.58 16 9 C 0.53 9.65 7.89 -10.99 -0.09 9.57 16 10 O -0.55 -11.81 16.38 5.56 0.09 -11.71 16 11 N -0.61 -11.07 2.95 -156.77 -0.46 -11.53 16 12 C 0.08 1.38 6.01 -1.68 -0.01 1.37 16 13 C 0.14 2.54 5.52 -62.58 -0.35 2.20 16 14 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 15 C -0.15 -2.57 6.81 -22.29 -0.15 -2.72 16 16 C 0.10 1.91 5.24 -62.54 -0.33 1.58 16 17 H 0.11 2.14 8.06 -51.93 -0.42 1.73 16 18 C 0.18 4.19 4.77 -1.67 -0.01 4.18 16 19 N -0.60 -14.13 3.03 -156.36 -0.47 -14.61 16 20 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 21 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.52 10.56 55.49 0.59 -25.94 16 24 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C -0.10 -1.39 9.34 -39.59 -0.37 -1.76 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.93 6.03 -51.93 -0.31 0.62 16 36 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 37 H 0.10 1.12 8.05 -51.93 -0.42 0.71 16 38 H 0.10 1.38 6.16 -51.94 -0.32 1.06 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 44 H 0.05 1.44 7.46 -51.93 -0.39 1.06 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -32.01 370.00 -10.43 -42.44 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.29 Total: 3.35 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.43 Total: -4.04 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.35 Total: -52.07 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.01 -10.43 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032604164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.392 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds