Wall clock time and date at job start Tue Mar 31 2020 10:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.50700 * 120.00266 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 8 8 C 1.50706 * 119.99804 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.46722 * 85.00734 * 8 7 5 10 10 O 1.21280 * 119.99971 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99508 * 179.97438 * 9 8 7 12 12 C 1.47871 * 126.94902 * 359.68862 * 11 9 8 13 13 C 1.56002 * 105.11405 * 181.87236 * 12 11 9 14 14 H 1.08997 * 116.80678 * 159.41701 * 13 12 11 15 15 C 1.57086 * 99.47545 * 33.16019 * 13 12 11 16 16 C 1.49290 * 126.94189 * 179.97438 * 11 9 8 17 17 H 1.09002 * 116.15224 * 16.70302 * 16 11 9 18 18 C 1.56025 * 104.09467 * 246.70196 * 16 11 9 19 19 N 1.47873 * 105.10019 * 288.76463 * 18 16 11 20 20 C 1.36939 * 126.94053 * 181.97655 * 19 18 16 21 21 H 1.08005 * 119.99738 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00090 * 0.03175 * 20 19 18 23 23 N 1.31615 * 120.00263 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47202 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47249 * 119.99709 * 24 22 20 27 27 H 1.48501 * 109.46904 * 239.99755 * 24 22 20 28 28 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 29 29 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 30 30 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 31 31 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 32 32 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 34 34 H 1.08994 * 109.47517 * 89.99651 * 6 5 4 35 35 H 1.08997 * 109.46988 * 210.00044 * 6 5 4 36 36 H 1.09009 * 109.46840 * 329.99292 * 6 5 4 37 37 H 1.09000 * 109.46714 * 205.00159 * 8 7 5 38 38 H 1.08989 * 109.47244 * 325.00654 * 8 7 5 39 39 H 1.08999 * 110.31140 * 300.90251 * 12 11 9 40 40 H 1.09001 * 110.31744 * 63.09243 * 12 11 9 41 41 H 1.08998 * 112.36795 * 191.50656 * 15 13 12 42 42 H 1.09006 * 112.36675 * 64.07555 * 15 13 12 43 43 H 1.08998 * 110.31351 * 47.67191 * 18 16 11 44 44 H 1.09003 * 110.31595 * 169.86121 * 18 16 11 45 45 H 0.96998 * 120.00401 * 179.97438 * 23 22 20 46 46 H 1.07999 * 119.99936 * 0.04181 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 5.7787 0.0002 0.0115 7 6 3.5806 -1.1968 0.0008 8 6 4.3343 -2.5019 0.0001 9 6 4.6882 -2.8783 1.4158 10 8 4.3611 -2.1576 2.3347 11 7 5.3681 -4.0159 1.6606 12 6 5.8348 -5.0043 0.6647 13 6 6.5136 -6.1337 1.4997 14 1 6.6187 -7.1058 1.0179 15 6 5.6125 -6.0820 2.7854 16 6 5.7973 -4.5357 2.9926 17 1 5.3037 -4.0987 3.8607 18 6 7.3547 -4.4514 2.9496 19 7 7.7720 -5.5118 2.0072 20 6 9.0540 -5.8536 1.6682 21 1 9.2313 -6.6518 0.9625 22 6 10.1255 -5.1744 2.2315 23 7 9.9094 -4.2015 3.0912 24 14 11.8742 -5.6412 1.7695 25 1 11.8464 -6.7583 0.7916 26 1 12.5558 -4.4692 1.1636 27 1 12.6107 -6.0676 2.9866 28 6 2.1981 -1.1969 -0.0045 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0101 34 1 6.1381 -0.0021 1.0405 35 1 6.1440 -0.8885 -0.5030 36 1 6.1439 0.8914 -0.4990 37 1 3.7107 -3.2812 -0.4380 38 1 5.2467 -2.3942 -0.5862 39 1 4.9902 -5.4025 0.1024 40 1 6.5588 -4.5484 -0.0106 41 1 6.0293 -6.6635 3.6077 42 1 4.5771 -6.3521 2.5773 43 1 7.6708 -3.4744 2.5841 44 1 7.7714 -4.6391 3.9392 45 1 10.6581 -3.7271 3.4851 46 1 1.6581 -2.1322 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032604164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:41 Heat of formation + Delta-G solvation = 20.796950 kcal Electronic energy + Delta-G solvation = -26521.130296 eV Core-core repulsion = 22990.142540 eV Total energy + Delta-G solvation = -3530.987756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67457 -40.63404 -39.09302 -35.44611 -35.12143 -33.59915 -32.97315 -30.85024 -30.23594 -30.15954 -28.61221 -26.96787 -25.68326 -25.16516 -23.31263 -22.32698 -21.41405 -20.94846 -19.89307 -18.80936 -17.92539 -17.40681 -17.08920 -16.73318 -16.34736 -16.07089 -15.70612 -15.63237 -14.96506 -14.80271 -14.66304 -14.18035 -13.95095 -13.79348 -13.71413 -13.60936 -13.51052 -13.33389 -13.10364 -12.89641 -12.77669 -12.76443 -12.71495 -12.38345 -12.31039 -12.13120 -11.99663 -11.87929 -11.82836 -11.75110 -11.52871 -10.96979 -10.71798 -9.67208 -9.50630 -9.27417 -8.90597 -7.84209 -5.20102 0.41170 0.49348 1.46968 1.47121 1.57497 1.68207 2.04782 2.48457 2.82815 3.33586 3.39506 3.64987 3.70158 3.86243 3.91025 3.93449 4.01987 4.05643 4.11168 4.21586 4.22344 4.35677 4.47822 4.58150 4.63493 4.69387 4.70828 4.74220 4.81677 4.86650 4.87160 4.89422 4.95966 5.02650 5.11147 5.15107 5.22610 5.26581 5.36765 5.45781 5.52955 5.55329 5.65607 5.70285 5.75345 6.10001 6.16193 6.70880 7.03075 7.22244 7.71372 8.41958 9.26968 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.003403 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.751284 B = 8224.853774 C = 8974.355583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.091 4.091 9 C 0.526 3.474 10 O -0.588 6.588 11 N -0.611 5.611 12 C 0.090 3.910 13 C 0.135 3.865 14 H 0.137 0.863 15 C -0.130 4.130 16 C 0.099 3.901 17 H 0.108 0.892 18 C 0.190 3.810 19 N -0.617 5.617 20 C -0.227 4.227 21 H 0.097 0.903 22 C -0.073 4.073 23 N -0.957 5.957 24 Si 0.976 3.024 25 H -0.257 1.257 26 H -0.300 1.300 27 H -0.298 1.298 28 C -0.117 4.117 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.103 0.897 43 H -0.005 1.005 44 H 0.014 0.986 45 H 0.243 0.757 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.023 3.104 -10.183 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.096 4.096 6 C -0.171 4.171 7 C -0.077 4.077 8 C -0.130 4.130 9 C 0.317 3.683 10 O -0.469 6.469 11 N -0.344 5.344 12 C -0.034 4.034 13 C 0.029 3.971 14 H 0.155 0.845 15 C -0.169 4.169 16 C -0.004 4.004 17 H 0.126 0.874 18 C 0.064 3.936 19 N -0.341 5.341 20 C -0.356 4.356 21 H 0.115 0.885 22 C -0.265 4.265 23 N -0.607 5.607 24 Si 0.805 3.195 25 H -0.181 1.181 26 H -0.228 1.228 27 H -0.226 1.226 28 C -0.134 4.134 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.013 0.987 44 H 0.032 0.968 45 H 0.052 0.948 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.985 3.595 -9.714 20.754 hybrid contribution 1.803 0.343 0.492 1.900 sum -16.182 3.938 -9.222 19.037 Atomic orbital electron populations 1.20793 0.89096 1.03380 1.03197 1.20228 0.97628 0.92760 0.99613 1.21296 0.93870 0.98519 1.00630 1.21223 0.94969 0.97442 1.00957 1.19898 0.96023 0.93523 1.00130 1.20795 0.91695 1.03326 1.01242 1.19331 0.94096 0.93353 1.00899 1.20660 1.02596 0.96822 0.92900 1.20672 0.76758 0.79023 0.91880 1.90656 1.56488 1.51677 1.48042 1.49320 1.54032 1.21807 1.09287 1.23223 0.98804 0.90143 0.91203 1.23595 0.84361 0.95655 0.93537 0.84549 1.24078 1.00823 0.92756 0.99255 1.24118 0.94315 0.95324 0.86664 0.87402 1.21466 0.89120 0.90422 0.92590 1.45501 1.01217 1.38042 1.49372 1.19584 0.81820 1.13950 1.20206 0.88508 1.25665 1.01934 0.98888 1.00043 1.70175 1.29871 1.26281 1.34364 0.85034 0.79956 0.77338 0.77170 1.18088 1.22777 1.22567 1.21076 0.92870 0.98776 1.00726 0.89850 0.91298 0.90665 0.83879 0.84748 0.93665 0.91708 0.89780 0.85385 0.87556 0.87665 0.92732 0.90348 0.87830 0.98657 0.96758 0.94828 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 2 C -0.10 -2.27 5.88 -19.87 -0.12 -2.38 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.13 -3.22 9.70 22.27 0.22 -3.00 16 5 C -0.10 -2.78 5.88 -19.87 -0.12 -2.89 16 6 C -0.11 -3.31 9.60 71.24 0.68 -2.63 16 7 C -0.08 -2.17 4.37 -19.86 -0.09 -2.25 16 8 C -0.09 -2.45 4.62 29.11 0.13 -2.32 16 9 C 0.53 18.96 7.89 87.66 0.69 19.65 16 10 O -0.59 -25.96 16.38 -3.03 -0.05 -26.01 16 11 N -0.61 -21.67 2.95 -768.30 -2.26 -23.93 16 12 C 0.09 2.72 6.01 87.16 0.52 3.24 16 13 C 0.13 4.51 5.52 46.93 0.26 4.77 16 14 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 15 C -0.13 -4.03 6.81 33.47 0.23 -3.80 16 16 C 0.10 3.88 5.24 46.94 0.25 4.12 16 17 H 0.11 4.27 8.06 -2.39 -0.02 4.25 16 18 C 0.19 9.55 4.77 87.16 0.42 9.97 16 19 N -0.62 -29.31 3.03 -648.61 -1.96 -31.27 16 20 C -0.23 -11.89 10.37 84.03 0.87 -11.02 16 21 H 0.10 4.67 7.83 -2.91 -0.02 4.64 16 22 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 23 N -0.96 -58.54 10.56 21.65 0.23 -58.31 16 24 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 C -0.12 -2.90 9.34 22.27 0.21 -2.69 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 31 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.85 6.03 -2.39 -0.01 1.83 16 36 H 0.08 2.00 8.09 -2.38 -0.02 1.98 16 37 H 0.13 2.56 8.05 -2.39 -0.02 2.54 16 38 H 0.11 2.78 6.16 -2.39 -0.01 2.77 16 39 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.00 -0.29 7.68 -2.39 -0.02 -0.30 16 44 H 0.01 0.82 7.46 -2.39 -0.02 0.80 16 45 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -74.71 370.00 4.49 -70.22 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.96 Total: 20.48 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.55 Total: 1.68 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.00 Total: -113.52 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.01 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.71 4.49 -70.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032604164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.017 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds