Wall clock time and date at job start Tue Mar 31 2020 11:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 C 1.50703 * 109.47455 * 120.00505 * 2 1 3 5 5 C 1.38376 * 119.92594 * 299.99487 * 4 2 1 6 6 C 1.38331 * 120.29431 * 179.74647 * 5 4 2 7 7 C 1.37987 * 120.14388 * 0.02562 * 6 5 4 8 8 C 1.39557 * 119.84804 * 359.97438 * 7 6 5 9 9 C 1.47849 * 120.13753 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99358 * 172.19272 * 9 8 7 11 11 N 1.34777 * 120.00392 * 352.20112 * 9 8 7 12 12 C 1.47869 * 126.94150 * 4.67720 * 11 9 8 13 13 C 1.56021 * 105.09991 * 181.98235 * 12 11 9 14 14 H 1.08996 * 116.24520 * 158.84121 * 13 12 11 15 15 C 1.57086 * 99.60866 * 32.80938 * 13 12 11 16 16 C 1.49287 * 126.94321 * 184.37341 * 11 9 8 17 17 H 1.09001 * 116.15501 * 16.71792 * 16 11 9 18 18 C 1.56019 * 104.08874 * 246.71534 * 16 11 9 19 19 N 1.47368 * 105.15055 * 288.60588 * 18 16 11 20 20 C 1.36937 * 126.79262 * 182.06058 * 19 18 16 21 21 H 1.07999 * 119.99385 * 180.28771 * 20 19 18 22 22 C 1.38809 * 119.99837 * 0.28386 * 20 19 18 23 23 N 1.31620 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99657 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46956 * 90.00524 * 24 22 20 26 26 H 1.48502 * 109.47090 * 210.00108 * 24 22 20 27 27 H 1.48500 * 109.47250 * 330.00559 * 24 22 20 28 28 C 1.37931 * 119.92357 * 119.72209 * 4 2 1 29 29 H 1.09002 * 109.46872 * 299.99389 * 1 2 3 30 30 H 1.08998 * 109.47734 * 59.99528 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46872 * 240.00611 * 2 1 3 33 33 H 1.09002 * 109.46846 * 60.00595 * 3 2 1 34 34 H 1.08999 * 109.46656 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46930 * 300.00089 * 3 2 1 36 36 H 1.08004 * 119.85403 * 359.72784 * 5 4 2 37 37 H 1.08001 * 119.93261 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.07151 * 179.97438 * 7 6 5 39 39 H 1.08997 * 110.31744 * 300.88982 * 12 11 9 40 40 H 1.09000 * 110.31449 * 63.08009 * 12 11 9 41 41 H 1.09008 * 112.36252 * 64.27087 * 15 13 12 42 42 H 1.08997 * 112.36787 * 191.70713 * 15 13 12 43 43 H 1.08993 * 110.31868 * 47.67436 * 18 16 11 44 44 H 1.09003 * 110.31858 * 169.76040 * 18 16 11 45 45 H 0.96993 * 119.99965 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.08176 * 0.25193 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6973 -0.2365 2.4865 6 6 2.1500 -0.8858 3.6210 7 6 2.9399 -2.0113 3.5065 8 6 3.2815 -2.4946 2.2426 9 6 4.1271 -3.7004 2.1126 10 8 4.3064 -4.2019 1.0199 11 7 4.6990 -4.2437 3.2054 12 6 4.5091 -3.8225 4.6101 13 6 5.4415 -4.7553 5.4437 14 1 5.7245 -4.3949 6.4326 15 6 6.6071 -4.9531 4.4094 16 6 5.6471 -5.3962 3.2429 17 1 6.1192 -5.6609 2.2968 18 6 4.8490 -6.5209 3.9725 19 7 4.7732 -6.0888 5.3794 20 6 4.1992 -6.7727 6.4176 21 1 4.2019 -6.3484 7.4107 22 6 3.6140 -8.0113 6.1935 23 7 3.6111 -8.5285 4.9832 24 14 2.8316 -8.9445 7.6100 25 1 1.4001 -8.5657 7.7217 26 1 2.9393 -10.4045 7.3603 27 1 3.5335 -8.6053 8.8739 28 6 2.8206 -1.8351 1.1019 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.0799 0.6445 2.5816 37 1 1.8852 -0.5105 4.5985 38 1 3.2931 -2.5171 4.3931 39 1 4.8050 -2.7810 4.7362 40 1 3.4702 -3.9605 4.9094 41 1 7.1291 -4.0217 4.1897 42 1 7.2935 -5.7466 4.7046 43 1 3.8493 -6.6119 3.5481 44 1 5.3790 -7.4705 3.8978 45 1 3.2024 -9.3942 4.8268 46 1 3.0812 -2.2043 0.1210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032714979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:17 Heat of formation + Delta-G solvation = 57.348876 kcal Electronic energy + Delta-G solvation = -26473.434972 eV Core-core repulsion = 22944.032227 eV Total energy + Delta-G solvation = -3529.402746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51588 -39.27852 -37.61271 -35.46363 -33.70744 -31.81788 -30.90711 -30.07865 -28.71722 -28.55901 -27.34152 -25.47681 -24.48607 -23.08124 -22.87740 -21.09534 -20.17602 -19.65322 -18.78678 -17.23784 -16.42348 -16.36621 -15.80009 -15.26818 -15.09762 -14.70478 -14.35575 -13.96881 -13.85969 -13.72305 -13.61839 -13.33287 -13.14806 -12.64208 -12.54961 -12.12205 -11.99027 -11.80103 -11.70200 -11.57628 -11.34680 -11.31144 -11.04036 -10.97659 -10.86966 -10.82155 -10.61038 -10.52710 -10.15580 -10.06322 -9.67269 -9.50015 -8.89678 -8.71293 -8.69976 -8.01910 -6.94834 -5.78573 -3.13911 1.00349 1.40328 3.14045 3.34801 3.36398 3.40579 3.43469 3.99959 4.39772 4.50318 4.60814 4.77293 4.97303 5.00725 5.04020 5.05375 5.18613 5.25015 5.33016 5.40649 5.41205 5.46614 5.54040 5.59633 5.61061 5.66778 5.74099 5.77151 5.82323 5.88029 6.02525 6.04072 6.04576 6.06721 6.25774 6.36823 6.38778 6.45018 6.48072 6.56084 6.56555 6.67864 6.95514 7.41084 7.48407 7.71042 8.04850 8.09319 8.57787 9.08543 9.68985 10.37350 11.33051 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.003365 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.687289 B = 8319.905885 C = 8744.866072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.119 4.119 9 C 0.568 3.432 10 O -0.553 6.553 11 N -0.599 5.599 12 C 0.075 3.925 13 C 0.139 3.861 14 H 0.108 0.892 15 C -0.152 4.152 16 C 0.099 3.901 17 H 0.114 0.886 18 C 0.175 3.825 19 N -0.596 5.596 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C -0.062 4.062 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 18.665 -4.935 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.122 4.122 9 C 0.358 3.642 10 O -0.433 6.433 11 N -0.331 5.331 12 C -0.050 4.050 13 C 0.030 3.970 14 H 0.126 0.874 15 C -0.192 4.192 16 C -0.004 4.004 17 H 0.132 0.868 18 C 0.050 3.950 19 N -0.320 5.320 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.081 4.081 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.177 0.823 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.193 18.154 -5.528 19.015 hybrid contribution -0.656 -0.560 0.714 1.120 sum -1.849 17.594 -4.814 18.334 Atomic orbital electron populations 1.21861 0.94311 1.02210 1.01751 1.20117 0.95959 0.95951 0.95440 1.21854 1.01311 0.95101 1.01766 1.19762 0.98593 0.95981 0.94859 1.21116 0.98977 0.99423 0.92022 1.21126 0.98663 0.96193 0.98578 1.22759 0.96373 0.95976 0.98708 1.19983 1.01117 0.96867 0.94247 1.17911 0.79672 0.83347 0.83258 1.90725 1.62908 1.63603 1.26054 1.49072 1.44965 1.33150 1.05953 1.23688 1.01747 0.97791 0.81814 1.23239 0.90494 0.87358 0.95935 0.87402 1.24235 0.97142 1.00816 0.96983 1.24463 0.90044 0.87574 0.98277 0.86771 1.21831 0.97811 0.92509 0.82890 1.45119 1.65668 1.16074 1.05124 1.19041 1.30017 0.99165 0.87987 0.90105 1.24834 1.00919 0.97636 0.96807 1.69920 1.48858 1.18597 1.19046 0.86112 0.79180 0.79224 0.81151 1.21597 1.21672 1.20610 1.21139 0.94988 0.93535 0.98443 0.92501 0.92430 0.92371 0.90305 0.92509 0.92490 0.92444 0.86151 0.85672 0.82269 0.91909 0.90210 0.91560 0.89652 0.93463 0.92482 0.93531 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 37.16 0.33 -0.88 16 2 C -0.06 -0.53 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.13 9.01 37.16 0.33 -0.80 16 4 C -0.09 -1.10 4.78 -104.68 -0.50 -1.60 16 5 C -0.10 -1.07 8.71 -39.50 -0.34 -1.42 16 6 C -0.13 -1.51 10.03 -39.64 -0.40 -1.90 16 7 C -0.12 -1.71 8.74 -39.18 -0.34 -2.06 16 8 C -0.12 -1.96 5.87 -104.97 -0.62 -2.58 16 9 C 0.57 11.16 7.85 -12.33 -0.10 11.06 16 10 O -0.55 -12.40 16.75 5.32 0.09 -12.32 16 11 N -0.60 -11.34 2.95 -158.07 -0.47 -11.80 16 12 C 0.07 1.25 4.24 -1.67 -0.01 1.24 16 13 C 0.14 2.50 5.53 -62.55 -0.35 2.16 16 14 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 15 C -0.15 -2.54 6.84 -22.10 -0.15 -2.69 16 16 C 0.10 1.93 5.25 -62.35 -0.33 1.60 16 17 H 0.11 2.18 8.08 -51.93 -0.42 1.76 16 18 C 0.17 4.20 4.74 -1.95 -0.01 4.19 16 19 N -0.60 -14.12 3.01 -156.74 -0.47 -14.59 16 20 C -0.23 -6.14 10.37 -15.06 -0.16 -6.30 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 23 N -0.92 -26.69 10.53 55.49 0.58 -26.11 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C -0.06 -0.92 9.21 -39.19 -0.36 -1.28 16 29 H 0.06 0.45 7.39 -51.93 -0.38 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 1.04 7.08 -52.48 -0.37 0.67 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.16 2.22 2.87 -53.03 -0.15 2.07 16 39 H 0.06 0.86 6.78 -51.93 -0.35 0.51 16 40 H 0.08 1.46 6.95 -51.93 -0.36 1.09 16 41 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.05 1.32 7.68 -51.93 -0.40 0.92 16 44 H 0.06 1.51 7.42 -51.93 -0.39 1.12 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.13 1.96 7.56 -52.49 -0.40 1.56 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -31.67 361.09 -10.15 -41.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.94 Total: 3.32 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.36 Total: -2.30 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.35 Total: -52.50 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.67 -10.15 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032714979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.167 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds