Wall clock time and date at job start Tue Mar 31 2020 11:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 C 1.50703 * 109.47455 * 120.00505 * 2 1 3 5 5 C 1.38376 * 119.92594 * 299.99487 * 4 2 1 6 6 C 1.38331 * 120.29431 * 179.74647 * 5 4 2 7 7 C 1.37987 * 120.14388 * 0.02562 * 6 5 4 8 8 C 1.39557 * 119.84804 * 359.97438 * 7 6 5 9 9 C 1.47849 * 120.13753 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99358 * 172.19272 * 9 8 7 11 11 N 1.34777 * 120.00392 * 352.20112 * 9 8 7 12 12 C 1.47869 * 126.94150 * 4.67720 * 11 9 8 13 13 C 1.56021 * 105.09991 * 181.98235 * 12 11 9 14 14 H 1.08996 * 116.24520 * 158.84121 * 13 12 11 15 15 C 1.57086 * 99.60866 * 32.80938 * 13 12 11 16 16 C 1.49287 * 126.94321 * 184.37341 * 11 9 8 17 17 H 1.09001 * 116.15501 * 16.71792 * 16 11 9 18 18 C 1.56019 * 104.08874 * 246.71534 * 16 11 9 19 19 N 1.47368 * 105.15055 * 288.60588 * 18 16 11 20 20 C 1.36937 * 126.79262 * 182.06058 * 19 18 16 21 21 H 1.07999 * 119.99385 * 180.28771 * 20 19 18 22 22 C 1.38809 * 119.99837 * 0.28386 * 20 19 18 23 23 N 1.31620 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99657 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46956 * 90.00524 * 24 22 20 26 26 H 1.48502 * 109.47090 * 210.00108 * 24 22 20 27 27 H 1.48500 * 109.47250 * 330.00559 * 24 22 20 28 28 C 1.37931 * 119.92357 * 119.72209 * 4 2 1 29 29 H 1.09002 * 109.46872 * 299.99389 * 1 2 3 30 30 H 1.08998 * 109.47734 * 59.99528 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46872 * 240.00611 * 2 1 3 33 33 H 1.09002 * 109.46846 * 60.00595 * 3 2 1 34 34 H 1.08999 * 109.46656 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46930 * 300.00089 * 3 2 1 36 36 H 1.08004 * 119.85403 * 359.72784 * 5 4 2 37 37 H 1.08001 * 119.93261 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.07151 * 179.97438 * 7 6 5 39 39 H 1.08997 * 110.31744 * 300.88982 * 12 11 9 40 40 H 1.09000 * 110.31449 * 63.08009 * 12 11 9 41 41 H 1.09008 * 112.36252 * 64.27087 * 15 13 12 42 42 H 1.08997 * 112.36787 * 191.70713 * 15 13 12 43 43 H 1.08993 * 110.31868 * 47.67436 * 18 16 11 44 44 H 1.09003 * 110.31858 * 169.76040 * 18 16 11 45 45 H 0.96993 * 119.99965 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.08176 * 0.25193 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6973 -0.2365 2.4865 6 6 2.1500 -0.8858 3.6210 7 6 2.9399 -2.0113 3.5065 8 6 3.2815 -2.4946 2.2426 9 6 4.1271 -3.7004 2.1126 10 8 4.3064 -4.2019 1.0199 11 7 4.6990 -4.2437 3.2054 12 6 4.5091 -3.8225 4.6101 13 6 5.4415 -4.7553 5.4437 14 1 5.7245 -4.3949 6.4326 15 6 6.6071 -4.9531 4.4094 16 6 5.6471 -5.3962 3.2429 17 1 6.1192 -5.6609 2.2968 18 6 4.8490 -6.5209 3.9725 19 7 4.7732 -6.0888 5.3794 20 6 4.1992 -6.7727 6.4176 21 1 4.2019 -6.3484 7.4107 22 6 3.6140 -8.0113 6.1935 23 7 3.6111 -8.5285 4.9832 24 14 2.8316 -8.9445 7.6100 25 1 1.4001 -8.5657 7.7217 26 1 2.9393 -10.4045 7.3603 27 1 3.5335 -8.6053 8.8739 28 6 2.8206 -1.8351 1.1019 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.0799 0.6445 2.5816 37 1 1.8852 -0.5105 4.5985 38 1 3.2931 -2.5171 4.3931 39 1 4.8050 -2.7810 4.7362 40 1 3.4702 -3.9605 4.9094 41 1 7.1291 -4.0217 4.1897 42 1 7.2935 -5.7466 4.7046 43 1 3.8493 -6.6119 3.5481 44 1 5.3790 -7.4705 3.8978 45 1 3.2024 -9.3942 4.8268 46 1 3.0812 -2.2043 0.1210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032714979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:16 Heat of formation + Delta-G solvation = 39.818201 kcal Electronic energy + Delta-G solvation = -26474.195159 eV Core-core repulsion = 22944.032227 eV Total energy + Delta-G solvation = -3530.162933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94539 -40.46181 -39.09779 -36.39561 -35.48151 -33.48178 -32.04309 -31.39557 -30.33143 -30.00810 -27.95935 -27.13845 -26.05328 -24.39267 -23.96549 -22.34511 -21.56398 -21.06675 -20.27120 -18.86923 -17.88735 -17.63792 -17.19937 -16.70375 -16.30378 -16.13366 -15.78714 -15.52330 -14.97067 -14.81320 -14.65690 -14.58934 -14.37868 -13.91076 -13.67067 -13.47946 -13.29671 -13.14980 -12.95466 -12.86260 -12.78655 -12.70705 -12.59080 -12.25017 -12.14829 -12.03058 -12.02286 -11.90408 -11.61721 -11.55958 -11.45467 -11.04635 -10.68536 -9.99674 -9.69914 -9.56079 -8.91714 -7.84670 -5.21351 -0.11762 0.39952 1.46943 1.48450 1.57218 1.81076 1.91692 2.48200 2.85746 3.29992 3.33762 3.51392 3.66386 3.74879 3.80975 3.91067 3.99892 4.08953 4.15072 4.26177 4.32380 4.37620 4.46954 4.48616 4.54074 4.59103 4.72150 4.83194 4.83966 4.91370 4.98299 5.00343 5.01204 5.05360 5.11688 5.19951 5.20674 5.29613 5.38405 5.41321 5.44120 5.47080 5.53253 5.63566 5.65339 5.97596 6.09021 6.56767 7.02169 7.06735 7.70553 8.40252 9.26254 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.003365 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.687289 B = 8319.905885 C = 8744.866072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.086 4.086 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.146 4.146 9 C 0.559 3.441 10 O -0.597 6.597 11 N -0.602 5.602 12 C 0.082 3.918 13 C 0.135 3.865 14 H 0.144 0.856 15 C -0.128 4.128 16 C 0.098 3.902 17 H 0.112 0.888 18 C 0.190 3.810 19 N -0.614 5.614 20 C -0.229 4.229 21 H 0.100 0.900 22 C -0.073 4.073 23 N -0.959 5.959 24 Si 0.978 3.022 25 H -0.291 1.291 26 H -0.303 1.303 27 H -0.259 1.259 28 C -0.081 4.081 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.084 0.916 43 H -0.008 1.008 44 H 0.020 0.980 45 H 0.243 0.757 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 22.890 -2.775 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.088 4.088 5 C -0.104 4.104 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.149 4.149 9 C 0.351 3.649 10 O -0.481 6.481 11 N -0.334 5.334 12 C -0.041 4.041 13 C 0.029 3.971 14 H 0.161 0.839 15 C -0.168 4.168 16 C -0.006 4.006 17 H 0.130 0.870 18 C 0.063 3.937 19 N -0.339 5.339 20 C -0.358 4.358 21 H 0.118 0.882 22 C -0.266 4.266 23 N -0.608 5.608 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.230 1.230 27 H -0.184 1.184 28 C -0.100 4.100 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.010 0.990 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.473 22.444 -3.320 22.736 hybrid contribution -0.598 -1.776 -0.002 1.874 sum -2.071 20.668 -3.322 21.036 Atomic orbital electron populations 1.21854 0.93205 1.01647 1.03195 1.20187 0.96776 0.96756 0.93934 1.21832 1.00813 0.93819 1.03150 1.20060 0.97243 0.94796 0.96688 1.21541 0.97968 0.99856 0.91068 1.21514 0.97056 0.94819 1.00460 1.22786 0.97232 0.96986 0.97461 1.19850 1.02561 0.96440 0.96030 1.18586 0.79484 0.84153 0.82710 1.90681 1.64513 1.65175 1.27685 1.49150 1.44664 1.32574 1.06964 1.23673 1.00640 0.99787 0.80007 1.23697 0.90527 0.84700 0.98213 0.83873 1.24142 0.96167 1.02324 0.94118 1.24311 0.90671 0.86581 0.98995 0.87009 1.21383 0.95022 0.93026 0.84250 1.45371 1.65970 1.18341 1.04177 1.19575 1.28111 0.98876 0.89246 0.88241 1.25705 1.02698 0.99240 0.98940 1.70179 1.50793 1.18499 1.21324 0.85070 0.78110 0.76976 0.79129 1.21810 1.23047 1.18363 1.21161 0.96452 0.94964 0.97395 0.91248 0.90842 0.93937 0.91202 0.91238 0.93288 0.90984 0.82643 0.82271 0.82107 0.87312 0.91786 0.87805 0.89757 0.98967 0.96233 0.94796 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.01 71.98 0.65 -1.39 16 2 C -0.06 -0.99 3.09 -11.54 -0.04 -1.03 16 3 C -0.14 -1.78 9.01 71.98 0.65 -1.13 16 4 C -0.09 -1.95 4.78 -19.90 -0.10 -2.05 16 5 C -0.09 -1.58 8.71 22.32 0.19 -1.39 16 6 C -0.12 -2.39 10.03 22.23 0.22 -2.16 16 7 C -0.13 -3.36 8.74 22.53 0.20 -3.16 16 8 C -0.15 -4.83 5.87 -20.09 -0.12 -4.94 16 9 C 0.56 22.79 7.85 86.79 0.68 23.47 16 10 O -0.60 -28.62 16.75 -3.89 -0.07 -28.68 16 11 N -0.60 -23.03 2.95 -772.28 -2.28 -25.31 16 12 C 0.08 2.60 4.24 87.16 0.37 2.97 16 13 C 0.13 4.55 5.53 46.93 0.26 4.81 16 14 H 0.14 3.86 8.14 -2.39 -0.02 3.85 16 15 C -0.13 -4.03 6.84 33.59 0.23 -3.80 16 16 C 0.10 3.92 5.25 47.06 0.25 4.17 16 17 H 0.11 4.50 8.08 -2.39 -0.02 4.48 16 18 C 0.19 9.68 4.74 87.26 0.41 10.09 16 19 N -0.61 -29.34 3.01 -649.80 -1.95 -31.29 16 20 C -0.23 -12.03 10.37 84.03 0.87 -11.15 16 21 H 0.10 4.74 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 23 N -0.96 -59.09 10.53 21.65 0.23 -58.86 16 24 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 28 C -0.08 -2.42 9.21 22.52 0.21 -2.21 16 29 H 0.07 0.82 7.39 -2.39 -0.02 0.81 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.30 7.87 -2.39 -0.02 1.29 16 33 H 0.07 0.72 7.37 -2.39 -0.02 0.70 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.16 1.80 7.08 -2.91 -0.02 1.78 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.16 4.09 2.87 -3.42 -0.01 4.08 16 39 H 0.11 2.52 6.78 -2.39 -0.02 2.51 16 40 H 0.06 2.27 6.95 -2.39 -0.02 2.25 16 41 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 43 H -0.01 -0.48 7.68 -2.39 -0.02 -0.50 16 44 H 0.02 1.12 7.42 -2.39 -0.02 1.10 16 45 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.11 3.68 7.56 -2.91 -0.02 3.66 16 Total: -1.00 -75.53 361.09 4.34 -71.18 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.97 Total: 18.29 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.41 Total: 7.44 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -4.00 Total: -115.46 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.07 Total: -28.68 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -75.53 4.34 -71.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032714979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.003 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds