Wall clock time and date at job start Tue Mar 31 2020 10:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38366 * 119.85642 * 2 1 4 4 C 1.37949 * 120.14563 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.07297 * 180.02562 * 4 3 2 6 6 C 1.39573 * 119.85798 * 0.02562 * 4 3 2 7 7 C 1.47846 * 120.14831 * 179.97438 * 6 4 3 8 8 O 1.21556 * 119.99485 * 90.00477 * 7 6 4 9 9 N 1.34772 * 120.00371 * 270.00500 * 7 6 4 10 10 C 1.47868 * 126.94225 * 359.97033 * 9 7 6 11 11 C 1.56023 * 105.10431 * 182.00187 * 10 9 7 12 12 H 1.08994 * 116.24707 * 159.68495 * 11 10 9 13 13 C 1.57083 * 99.60577 * 32.81063 * 11 10 9 14 14 C 1.49284 * 126.94743 * 179.97438 * 9 7 6 15 15 H 1.09007 * 116.15342 * 15.83603 * 14 9 7 16 16 C 1.56025 * 104.09199 * 246.69664 * 14 9 7 17 17 N 1.47866 * 105.10162 * 288.76403 * 16 14 9 18 18 C 1.36942 * 126.94270 * 182.02049 * 17 16 14 19 19 H 1.08005 * 119.99686 * 173.64972 * 18 17 16 20 20 C 1.38811 * 120.00100 * 353.64497 * 18 17 16 21 21 N 1.31616 * 119.99689 * 6.39758 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 186.39796 * 20 18 17 23 23 H 1.48506 * 109.46895 * 94.98564 * 22 20 18 24 24 H 1.48498 * 109.47191 * 214.98655 * 22 20 18 25 25 H 1.48505 * 109.47049 * 334.98660 * 22 20 18 26 26 C 1.39583 * 119.70994 * 0.25781 * 6 4 3 27 27 C 1.50697 * 120.07760 * 179.72108 * 26 6 4 28 28 C 1.37957 * 119.84689 * 359.46789 * 26 6 4 29 29 H 1.08994 * 109.46956 * 89.99424 * 1 2 3 30 30 H 1.08996 * 109.46922 * 210.00204 * 1 2 3 31 31 H 1.09001 * 109.46425 * 329.99848 * 1 2 3 32 32 H 1.07998 * 119.92383 * 359.97438 * 3 2 1 33 33 H 1.08993 * 109.47141 * 269.97653 * 5 4 3 34 34 H 1.08995 * 109.47029 * 29.98130 * 5 4 3 35 35 H 1.09001 * 109.47172 * 149.97502 * 5 4 3 36 36 H 1.08995 * 110.32317 * 300.91230 * 10 9 7 37 37 H 1.09002 * 110.31673 * 63.09951 * 10 9 7 38 38 H 1.08999 * 112.37007 * 191.71818 * 13 11 10 39 39 H 1.09000 * 112.36845 * 64.27266 * 13 11 10 40 40 H 1.09002 * 110.31288 * 47.67065 * 16 14 9 41 41 H 1.09000 * 110.31717 * 169.75501 * 16 14 9 42 42 H 0.97005 * 119.99471 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46941 * 90.00088 * 27 26 6 44 44 H 1.09000 * 109.47326 * 209.99796 * 27 26 6 45 45 H 1.08999 * 109.47146 * 330.00559 * 27 26 6 46 46 H 1.08001 * 119.92462 * 180.27681 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.3239 2.5150 0.0011 6 6 4.2763 0.0000 0.0005 7 6 5.7547 0.0000 0.0005 8 8 6.3624 -0.0001 1.0533 9 7 6.4287 0.0001 -1.1666 10 6 5.8496 -0.0004 -2.5272 11 6 7.0756 -0.0526 -3.4908 12 1 6.8773 -0.4000 -4.5047 13 6 8.0590 -0.9115 -2.6174 14 6 7.9106 0.0006 -1.3471 15 1 8.5014 -0.2661 -0.4707 16 6 8.2148 1.3905 -1.9874 17 7 7.6925 1.3012 -3.3679 18 6 7.7612 2.2655 -4.3378 19 1 7.4330 2.0448 -5.3429 20 6 8.2525 3.5266 -4.0293 21 7 8.7686 3.7591 -2.8411 22 14 8.1811 4.8935 -5.3004 23 1 6.9569 5.7062 -5.0851 24 1 9.3801 5.7590 -5.1645 25 1 8.1494 4.3019 -6.6622 26 6 3.5754 -1.2070 -0.0055 27 6 4.3238 -2.5150 -0.0119 28 6 2.1958 -1.2000 -0.0002 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6523 2.1332 -0.0004 33 1 4.5051 2.8303 -1.0263 34 1 3.7316 3.2723 0.5146 35 1 5.2764 2.3882 0.5157 36 1 5.2186 -0.8776 -2.6697 37 1 5.2755 0.9109 -2.6945 38 1 9.0747 -0.9095 -3.0130 39 1 7.6882 -1.9224 -2.4479 40 1 7.7015 2.1803 -1.4389 41 1 9.2890 1.5750 -1.9988 42 1 9.1122 4.6402 -2.6256 43 1 4.5042 -2.8354 1.0143 44 1 3.7319 -3.2699 -0.5294 45 1 5.2768 -2.3857 -0.5249 46 1 1.6522 -2.1332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032768849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:46 Heat of formation + Delta-G solvation = 35.704579 kcal Electronic energy + Delta-G solvation = -27340.462367 eV Core-core repulsion = 23810.121054 eV Total energy + Delta-G solvation = -3530.341313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48629 -39.27918 -37.47845 -33.73736 -33.53412 -33.35433 -31.42729 -29.13278 -28.56867 -27.94238 -27.15088 -26.68186 -25.18774 -23.58417 -21.81427 -20.74257 -20.18681 -19.77928 -18.51410 -17.48730 -16.38844 -16.21786 -15.91342 -15.12431 -14.50336 -14.26838 -14.15638 -14.10007 -13.71876 -13.27579 -13.19035 -13.10143 -12.98262 -12.89784 -12.61728 -12.43100 -12.17617 -11.91966 -11.68080 -11.63999 -11.40354 -11.27467 -11.19220 -11.03073 -10.93916 -10.88392 -10.77815 -10.61329 -10.25329 -10.08396 -9.66077 -9.46343 -8.69817 -8.54195 -8.46906 -7.99877 -6.92791 -5.79341 -3.12800 1.21005 1.40272 3.00775 3.35767 3.37993 3.41156 3.43712 3.71403 4.40766 4.69669 4.72350 4.81108 4.84362 5.11531 5.20525 5.23336 5.24763 5.34520 5.45036 5.45741 5.55655 5.57021 5.59841 5.61719 5.62844 5.75920 5.76144 5.85158 5.92830 5.96540 5.98723 6.12736 6.21535 6.29473 6.38163 6.41358 6.45801 6.52185 6.54436 6.59418 6.64990 6.69931 6.99413 7.38844 7.50377 7.70746 8.06758 8.10116 8.57625 9.08646 9.69731 10.39554 11.33085 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004563 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.157307 B = 6135.341248 C = 6951.233104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.130 4.130 4 C -0.037 4.037 5 C -0.123 4.123 6 C -0.118 4.118 7 C 0.580 3.420 8 O -0.551 6.551 9 N -0.597 5.597 10 C 0.088 3.912 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.150 4.150 14 C 0.096 3.904 15 H 0.114 0.886 16 C 0.174 3.826 17 N -0.596 5.596 18 C -0.232 4.232 19 H 0.080 0.920 20 C -0.003 4.003 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.047 4.047 27 C -0.118 4.118 28 C -0.133 4.133 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 -10.500 3.625 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.179 4.179 6 C -0.121 4.121 7 C 0.368 3.632 8 O -0.430 6.430 9 N -0.330 5.330 10 C -0.038 4.038 11 C 0.032 3.968 12 H 0.124 0.876 13 C -0.189 4.189 14 C -0.006 4.006 15 H 0.132 0.868 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.360 4.360 19 H 0.098 0.902 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.047 4.047 27 C -0.175 4.175 28 C -0.151 4.151 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.542 -10.204 4.214 16.709 hybrid contribution -0.118 0.940 -0.603 1.124 sum -12.660 -9.263 3.611 16.097 Atomic orbital electron populations 1.20793 0.91169 1.02668 1.02347 1.19952 0.95946 0.92993 0.98236 1.20797 0.93021 0.97690 1.03297 1.19920 0.93557 0.94342 0.95898 1.20894 1.00233 0.93258 1.03519 1.19688 0.93102 0.93498 1.05780 1.17782 0.86435 0.76129 0.82810 1.90759 1.69628 1.51869 1.30720 1.49205 1.07959 1.70504 1.05297 1.23264 0.97958 1.00344 0.82188 1.23189 0.90305 0.87572 0.95750 0.87631 1.24141 1.01136 0.96950 0.96721 1.24383 0.79866 0.99397 0.96983 0.86847 1.21926 0.98520 0.90204 0.84412 1.45225 1.65626 1.11070 1.10133 1.19042 1.37412 0.89668 0.89892 0.90199 1.24815 1.00798 0.97465 0.96908 1.69931 1.44429 1.21677 1.20239 0.86149 0.77195 0.82279 0.80421 1.21647 1.21767 1.20583 1.19801 0.93562 0.93996 0.97372 1.20843 1.00146 0.93734 1.02731 1.20726 0.92939 0.97566 1.03855 0.91069 0.91601 0.91535 0.85758 0.89996 0.91308 0.91006 0.93003 0.91146 0.89743 0.91666 0.93112 0.93036 0.93599 0.90779 0.91198 0.91330 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.07 -0.84 5.89 -104.53 -0.62 -1.46 16 3 C -0.13 -1.72 9.34 -39.64 -0.37 -2.09 16 4 C -0.04 -0.58 5.91 -104.23 -0.62 -1.20 16 5 C -0.12 -2.01 9.62 36.01 0.35 -1.67 16 6 C -0.12 -1.99 4.91 -104.97 -0.52 -2.50 16 7 C 0.58 11.26 4.26 -12.33 -0.05 11.21 16 8 O -0.55 -12.39 17.45 5.32 0.09 -12.29 16 9 N -0.60 -11.24 2.95 -157.87 -0.46 -11.70 16 10 C 0.09 1.55 5.99 -1.67 -0.01 1.54 16 11 C 0.14 2.60 5.53 -62.55 -0.35 2.25 16 12 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 13 C -0.15 -2.51 6.81 -22.30 -0.15 -2.66 16 14 C 0.10 1.86 5.24 -62.55 -0.33 1.53 16 15 H 0.11 2.15 8.05 -51.93 -0.42 1.73 16 16 C 0.17 4.14 4.77 -1.67 -0.01 4.13 16 17 N -0.60 -14.13 3.02 -156.34 -0.47 -14.60 16 18 C -0.23 -6.09 10.36 -15.06 -0.16 -6.25 16 19 H 0.08 2.01 7.84 -52.48 -0.41 1.60 16 20 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 21 N -0.92 -26.33 10.61 55.49 0.59 -25.75 16 22 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.05 -0.67 5.91 -104.22 -0.62 -1.28 16 27 C -0.12 -1.46 9.62 36.00 0.35 -1.11 16 28 C -0.13 -1.61 9.34 -39.64 -0.37 -1.98 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.07 1.36 7.08 -51.93 -0.37 0.99 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 1.39 7.53 -51.93 -0.39 0.99 16 41 H 0.05 1.35 7.64 -51.93 -0.40 0.95 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.07 0.94 7.08 -51.93 -0.37 0.57 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -31.34 371.00 -10.28 -41.63 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.39 Total: 2.97 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.20 Total: -2.31 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.35 Total: -52.05 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.34 -10.28 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032768849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.330 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds