Wall clock time and date at job start Tue Mar 31 2020 10:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38366 * 119.85642 * 2 1 4 4 C 1.37949 * 120.14563 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.07297 * 180.02562 * 4 3 2 6 6 C 1.39573 * 119.85798 * 0.02562 * 4 3 2 7 7 C 1.47846 * 120.14831 * 179.97438 * 6 4 3 8 8 O 1.21556 * 119.99485 * 90.00477 * 7 6 4 9 9 N 1.34772 * 120.00371 * 270.00500 * 7 6 4 10 10 C 1.47868 * 126.94225 * 359.97033 * 9 7 6 11 11 C 1.56023 * 105.10431 * 182.00187 * 10 9 7 12 12 H 1.08994 * 116.24707 * 159.68495 * 11 10 9 13 13 C 1.57083 * 99.60577 * 32.81063 * 11 10 9 14 14 C 1.49284 * 126.94743 * 179.97438 * 9 7 6 15 15 H 1.09007 * 116.15342 * 15.83603 * 14 9 7 16 16 C 1.56025 * 104.09199 * 246.69664 * 14 9 7 17 17 N 1.47866 * 105.10162 * 288.76403 * 16 14 9 18 18 C 1.36942 * 126.94270 * 182.02049 * 17 16 14 19 19 H 1.08005 * 119.99686 * 173.64972 * 18 17 16 20 20 C 1.38811 * 120.00100 * 353.64497 * 18 17 16 21 21 N 1.31616 * 119.99689 * 6.39758 * 20 18 17 22 22 Si 1.86800 * 120.00051 * 186.39796 * 20 18 17 23 23 H 1.48506 * 109.46895 * 94.98564 * 22 20 18 24 24 H 1.48498 * 109.47191 * 214.98655 * 22 20 18 25 25 H 1.48505 * 109.47049 * 334.98660 * 22 20 18 26 26 C 1.39583 * 119.70994 * 0.25781 * 6 4 3 27 27 C 1.50697 * 120.07760 * 179.72108 * 26 6 4 28 28 C 1.37957 * 119.84689 * 359.46789 * 26 6 4 29 29 H 1.08994 * 109.46956 * 89.99424 * 1 2 3 30 30 H 1.08996 * 109.46922 * 210.00204 * 1 2 3 31 31 H 1.09001 * 109.46425 * 329.99848 * 1 2 3 32 32 H 1.07998 * 119.92383 * 359.97438 * 3 2 1 33 33 H 1.08993 * 109.47141 * 269.97653 * 5 4 3 34 34 H 1.08995 * 109.47029 * 29.98130 * 5 4 3 35 35 H 1.09001 * 109.47172 * 149.97502 * 5 4 3 36 36 H 1.08995 * 110.32317 * 300.91230 * 10 9 7 37 37 H 1.09002 * 110.31673 * 63.09951 * 10 9 7 38 38 H 1.08999 * 112.37007 * 191.71818 * 13 11 10 39 39 H 1.09000 * 112.36845 * 64.27266 * 13 11 10 40 40 H 1.09002 * 110.31288 * 47.67065 * 16 14 9 41 41 H 1.09000 * 110.31717 * 169.75501 * 16 14 9 42 42 H 0.97005 * 119.99471 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46941 * 90.00088 * 27 26 6 44 44 H 1.09000 * 109.47326 * 209.99796 * 27 26 6 45 45 H 1.08999 * 109.47146 * 330.00559 * 27 26 6 46 46 H 1.08001 * 119.92462 * 180.27681 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.3239 2.5150 0.0011 6 6 4.2763 0.0000 0.0005 7 6 5.7547 0.0000 0.0005 8 8 6.3624 -0.0001 1.0533 9 7 6.4287 0.0001 -1.1666 10 6 5.8496 -0.0004 -2.5272 11 6 7.0756 -0.0526 -3.4908 12 1 6.8773 -0.4000 -4.5047 13 6 8.0590 -0.9115 -2.6174 14 6 7.9106 0.0006 -1.3471 15 1 8.5014 -0.2661 -0.4707 16 6 8.2148 1.3905 -1.9874 17 7 7.6925 1.3012 -3.3679 18 6 7.7612 2.2655 -4.3378 19 1 7.4330 2.0448 -5.3429 20 6 8.2525 3.5266 -4.0293 21 7 8.7686 3.7591 -2.8411 22 14 8.1811 4.8935 -5.3004 23 1 6.9569 5.7062 -5.0851 24 1 9.3801 5.7590 -5.1645 25 1 8.1494 4.3019 -6.6622 26 6 3.5754 -1.2070 -0.0055 27 6 4.3238 -2.5150 -0.0119 28 6 2.1958 -1.2000 -0.0002 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6523 2.1332 -0.0004 33 1 4.5051 2.8303 -1.0263 34 1 3.7316 3.2723 0.5146 35 1 5.2764 2.3882 0.5157 36 1 5.2186 -0.8776 -2.6697 37 1 5.2755 0.9109 -2.6945 38 1 9.0747 -0.9095 -3.0130 39 1 7.6882 -1.9224 -2.4479 40 1 7.7015 2.1803 -1.4389 41 1 9.2890 1.5750 -1.9988 42 1 9.1122 4.6402 -2.6256 43 1 4.5042 -2.8354 1.0143 44 1 3.7319 -3.2699 -0.5294 45 1 5.2768 -2.3857 -0.5249 46 1 1.6522 -2.1332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032768849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:45 Heat of formation + Delta-G solvation = 18.618474 kcal Electronic energy + Delta-G solvation = -27341.203276 eV Core-core repulsion = 23810.121054 eV Total energy + Delta-G solvation = -3531.082222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91019 -40.58397 -38.97876 -35.48218 -34.63939 -34.52746 -33.15743 -30.82067 -30.28368 -28.94872 -28.24609 -27.72924 -26.98995 -25.26667 -23.21011 -21.81989 -21.57967 -21.32685 -20.07198 -19.05745 -18.08861 -17.58409 -17.34583 -16.77390 -15.92036 -15.74681 -15.50774 -15.31267 -15.08484 -14.63526 -14.56681 -14.23150 -14.01051 -13.97717 -13.84706 -13.67600 -13.56611 -13.37871 -13.28461 -13.17358 -12.85316 -12.75627 -12.65409 -12.41391 -12.37161 -12.21540 -12.14647 -12.04573 -11.95598 -11.89121 -11.55209 -11.01593 -10.71750 -9.62159 -9.58085 -9.53425 -8.91230 -7.86403 -5.21180 0.12954 0.35484 1.45608 1.46747 1.50292 1.55790 1.96018 2.47281 2.63069 3.29837 3.34548 3.52103 3.71000 3.73605 3.80209 3.86213 3.89019 4.00246 4.17245 4.27457 4.36379 4.43173 4.50978 4.52108 4.57474 4.63042 4.65696 4.69476 4.75723 4.84884 4.88274 4.90906 4.91920 4.99070 5.03921 5.10597 5.21038 5.23107 5.30035 5.41112 5.43626 5.51349 5.53474 5.60632 5.63897 5.99957 6.08484 6.57268 7.01614 7.05619 7.69741 8.40913 9.25303 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004563 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.157307 B = 6135.341248 C = 6951.233104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.060 4.060 5 C -0.113 4.113 6 C -0.148 4.148 7 C 0.581 3.419 8 O -0.593 6.593 9 N -0.597 5.597 10 C 0.099 3.901 11 C 0.137 3.863 12 H 0.137 0.863 13 C -0.125 4.125 14 C 0.097 3.903 15 H 0.114 0.886 16 C 0.189 3.811 17 N -0.614 5.614 18 C -0.231 4.231 19 H 0.095 0.905 20 C -0.066 4.066 21 N -0.954 5.954 22 Si 0.973 3.027 23 H -0.293 1.293 24 H -0.301 1.301 25 H -0.260 1.260 26 C -0.052 4.052 27 C -0.116 4.116 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.104 0.896 40 H -0.001 1.001 41 H 0.016 0.984 42 H 0.243 0.757 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.365 -13.383 2.154 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.061 4.061 5 C -0.169 4.169 6 C -0.151 4.151 7 C 0.371 3.629 8 O -0.476 6.476 9 N -0.329 5.329 10 C -0.026 4.026 11 C 0.031 3.969 12 H 0.154 0.846 13 C -0.164 4.164 14 C -0.006 4.006 15 H 0.132 0.868 16 C 0.063 3.937 17 N -0.339 5.339 18 C -0.360 4.360 19 H 0.113 0.887 20 C -0.259 4.259 21 N -0.603 5.603 22 Si 0.802 3.198 23 H -0.220 1.220 24 H -0.228 1.228 25 H -0.184 1.184 26 C -0.053 4.053 27 C -0.172 4.172 28 C -0.144 4.144 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.018 0.982 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.070 0.930 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.016 -13.134 2.697 20.888 hybrid contribution 0.867 1.806 -0.116 2.006 sum -15.148 -11.329 2.581 19.091 Atomic orbital electron populations 1.20880 0.88180 1.04135 1.03587 1.20418 0.98009 0.92163 0.95726 1.21043 0.91748 0.99556 1.02756 1.19942 0.94897 0.93295 0.97917 1.20742 0.99095 0.95234 1.01851 1.19632 0.91222 0.95214 1.09057 1.18292 0.87784 0.74703 0.82074 1.90712 1.70922 1.53759 1.32166 1.49250 1.07535 1.70148 1.05946 1.23122 0.97594 1.00709 0.81142 1.23600 0.90510 0.85059 0.97777 0.84574 1.24040 1.00946 0.97793 0.93615 1.24253 0.80782 0.97408 0.98189 0.86835 1.21501 0.95628 0.91582 0.85003 1.45464 1.66019 1.12994 1.09401 1.19521 1.35362 0.90169 0.90922 0.88731 1.25632 1.01602 0.99975 0.98686 1.70172 1.46375 1.21328 1.22427 0.85133 0.76237 0.79313 0.79138 1.22025 1.22833 1.18445 1.20088 0.94719 0.93543 0.96960 1.20880 0.99720 0.93651 1.02985 1.21147 0.92024 0.99228 1.02019 0.89723 0.89721 0.90628 0.83864 0.92192 0.88894 0.94803 0.89228 0.93787 0.89639 0.87811 0.98250 0.96629 0.94739 0.90833 0.87827 0.92998 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.06 -1.26 5.89 -19.80 -0.12 -1.37 16 3 C -0.13 -3.29 9.34 22.23 0.21 -3.08 16 4 C -0.06 -1.93 5.91 -19.61 -0.12 -2.05 16 5 C -0.11 -3.98 9.62 71.24 0.69 -3.30 16 6 C -0.15 -5.02 4.91 -20.09 -0.10 -5.11 16 7 C 0.58 23.41 4.26 86.79 0.37 23.78 16 8 O -0.59 -28.25 17.45 -3.89 -0.07 -28.32 16 9 N -0.60 -22.98 2.95 -771.65 -2.27 -25.25 16 10 C 0.10 3.40 5.99 87.16 0.52 3.93 16 11 C 0.14 4.84 5.53 46.93 0.26 5.10 16 12 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 13 C -0.12 -3.95 6.81 33.47 0.23 -3.72 16 14 C 0.10 3.86 5.24 46.94 0.25 4.11 16 15 H 0.11 4.51 8.05 -2.38 -0.02 4.49 16 16 C 0.19 9.59 4.77 87.17 0.42 10.00 16 17 N -0.61 -29.75 3.02 -648.54 -1.96 -31.71 16 18 C -0.23 -12.28 10.36 84.03 0.87 -11.41 16 19 H 0.09 4.65 7.84 -2.91 -0.02 4.63 16 20 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 21 N -0.95 -58.39 10.61 21.65 0.23 -58.16 16 22 Si 0.97 45.34 29.56 68.60 2.03 47.37 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 C -0.05 -1.38 5.91 -19.61 -0.12 -1.49 16 27 C -0.12 -2.54 9.62 71.23 0.69 -1.86 16 28 C -0.13 -2.56 9.34 22.23 0.21 -2.35 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.74 8.08 -2.39 -0.02 0.73 16 31 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 35 H 0.03 1.41 7.08 -2.39 -0.02 1.39 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.00 -0.04 7.53 -2.39 -0.02 -0.06 16 41 H 0.02 0.88 7.64 -2.39 -0.02 0.87 16 42 H 0.24 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 45 H 0.05 1.31 7.08 -2.39 -0.02 1.29 16 46 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -74.86 371.00 4.35 -70.51 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.96 Total: 18.25 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.43 Total: 7.31 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.00 Total: -115.12 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.07 Total: -28.32 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.86 4.35 -70.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032768849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.132 kcal (2) G-P(sol) polarization free energy of solvation -74.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds