Wall clock time and date at job start Tue Mar 31 2020 11:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47037 * 2 1 4 4 C 1.50706 * 109.46891 * 119.99925 * 2 1 3 5 5 O 1.21278 * 119.99705 * 3.41343 * 4 2 1 6 6 N 1.34771 * 119.99901 * 183.41693 * 4 2 1 7 7 C 1.47866 * 126.94619 * 355.27120 * 6 4 2 8 8 C 1.56017 * 105.10224 * 182.00491 * 7 6 4 9 9 H 1.09001 * 116.25196 * 158.84085 * 8 7 6 10 10 C 1.57076 * 99.60978 * 32.80394 * 8 7 6 11 11 C 1.49299 * 126.94146 * 175.27229 * 6 4 2 12 12 H 1.09001 * 116.14908 * 16.70550 * 11 6 4 13 13 C 1.56008 * 104.09076 * 246.69650 * 11 6 4 14 14 N 1.49294 * 104.09374 * 287.92030 * 8 7 6 15 15 C 1.36938 * 126.94274 * 247.54203 * 14 8 7 16 16 H 1.07991 * 120.00512 * 5.16595 * 15 14 8 17 17 C 1.38815 * 119.99493 * 185.16423 * 15 14 8 18 18 N 1.31615 * 120.00339 * 5.31936 * 17 15 14 19 19 Si 1.86807 * 119.99735 * 185.32222 * 17 15 14 20 20 H 1.48493 * 109.47416 * 84.99719 * 19 17 15 21 21 H 1.48503 * 109.46905 * 205.00165 * 19 17 15 22 22 H 1.48503 * 109.47012 * 324.99443 * 19 17 15 23 23 C 1.50704 * 109.47260 * 239.99632 * 2 1 3 24 24 C 1.38235 * 119.99783 * 247.94089 * 23 2 1 25 25 C 1.38240 * 119.99696 * 179.79312 * 24 23 2 26 26 C 1.38228 * 119.99706 * 0.43456 * 25 24 23 27 27 C 1.38237 * 120.00686 * 359.81565 * 26 25 24 28 28 C 1.38229 * 119.99775 * 68.21399 * 23 2 1 29 29 H 1.08996 * 109.47344 * 304.81584 * 1 2 3 30 30 H 1.09004 * 109.46750 * 64.81661 * 1 2 3 31 31 H 1.09000 * 109.47440 * 184.81260 * 1 2 3 32 32 H 1.09006 * 109.46715 * 189.09637 * 3 2 1 33 33 H 1.08997 * 109.47121 * 309.09619 * 3 2 1 34 34 H 1.08998 * 109.47090 * 69.10438 * 3 2 1 35 35 H 1.08999 * 110.31702 * 63.09904 * 7 6 4 36 36 H 1.08997 * 110.39916 * 300.95404 * 7 6 4 37 37 H 1.08998 * 112.36667 * 64.27881 * 10 8 7 38 38 H 1.09007 * 112.36765 * 191.71052 * 10 8 7 39 39 H 1.08998 * 110.32004 * 47.67937 * 13 11 6 40 40 H 1.09000 * 110.31449 * 169.76465 * 13 11 6 41 41 H 0.97004 * 120.00324 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00535 * 359.97438 * 24 23 2 43 43 H 1.07999 * 120.00101 * 180.27605 * 25 24 23 44 44 H 1.08009 * 119.99771 * 179.83968 * 26 25 24 45 45 H 1.07990 * 120.00344 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00243 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2459 -1.2251 1.9970 6 7 3.3553 -0.7737 1.4792 7 6 4.4476 -0.2895 0.6080 8 6 5.7628 -0.6626 1.3596 9 1 6.6656 -0.7215 0.7515 10 6 5.2987 -1.9918 2.0562 11 6 4.0144 -1.3468 2.6901 12 1 3.3979 -1.9983 3.3095 13 6 4.6616 -0.1122 3.3905 14 7 5.8058 0.2872 2.5106 15 6 6.7018 1.3043 2.7054 16 1 7.4291 1.5369 1.9418 17 6 6.6751 2.0364 3.8845 18 7 5.8603 1.6875 4.8575 19 14 7.7956 3.5168 4.0903 20 1 7.1471 4.7146 3.4989 21 1 8.0452 3.7516 5.5353 22 1 9.0856 3.2609 3.4005 23 6 2.0324 -0.7105 -1.2304 24 6 2.6867 -1.9222 -1.1101 25 6 3.1437 -2.5760 -2.2391 26 6 2.9544 -2.0137 -3.4876 27 6 2.3046 -0.7994 -3.6075 28 6 1.8439 -0.1477 -2.4788 29 1 -0.3634 0.5867 0.8437 30 1 -0.3633 0.4373 -0.9300 31 1 -0.3634 -1.0240 0.0862 32 1 3.1178 1.4467 -0.1625 33 1 1.5501 2.0010 -0.7975 34 1 1.8155 1.9072 0.9601 35 1 4.3786 0.7907 0.4795 36 1 4.4106 -0.7883 -0.3604 37 1 5.0581 -2.7748 1.3371 38 1 6.0069 -2.3337 2.8110 39 1 3.9427 0.7042 3.4589 40 1 5.0191 -0.3848 4.3835 41 1 5.8419 2.1989 5.6816 42 1 2.8382 -2.3596 -0.1344 43 1 3.6510 -3.5249 -2.1455 44 1 3.3138 -2.5233 -4.3695 45 1 2.1571 -0.3600 -4.5829 46 1 1.3362 0.8009 -2.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032770343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:25 Heat of formation + Delta-G solvation = 55.159674 kcal Electronic energy + Delta-G solvation = -27846.613987 eV Core-core repulsion = 24317.116311 eV Total energy + Delta-G solvation = -3529.497677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87994 -39.10204 -37.87291 -35.01188 -33.54020 -31.56498 -30.85830 -29.78790 -29.09150 -28.48865 -27.03863 -25.25951 -24.46766 -23.11676 -22.57648 -21.40271 -19.99281 -19.55302 -18.36324 -17.59933 -16.72190 -16.15334 -15.71333 -15.14481 -15.12546 -14.62626 -14.25643 -14.01360 -13.93846 -13.60899 -13.45716 -13.16235 -12.70864 -12.53605 -12.35561 -12.06144 -12.00791 -11.91572 -11.71323 -11.60048 -11.30237 -11.11184 -11.08281 -10.93113 -10.86136 -10.70899 -10.62292 -10.55012 -10.18201 -10.06834 -9.62434 -9.31478 -8.90591 -8.75985 -8.65946 -7.96906 -6.91469 -5.77199 -3.12234 1.31927 1.38057 3.00754 3.36473 3.39067 3.41380 3.43749 3.75178 4.41043 4.58178 4.62545 4.93800 4.95826 5.03071 5.09636 5.14884 5.20684 5.25722 5.38154 5.45253 5.52899 5.57225 5.62662 5.69255 5.75760 5.82588 5.84796 5.89216 5.97866 6.01402 6.02133 6.15653 6.26202 6.29550 6.38589 6.41666 6.45782 6.49839 6.53581 6.60588 6.60787 6.74669 6.96070 7.36060 7.46047 7.67232 8.05594 8.11043 8.58438 9.05941 9.69839 10.41052 11.34764 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004451 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.229977 B = 6288.781344 C = 6449.433264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.039 4.039 3 C -0.147 4.147 4 C 0.540 3.460 5 O -0.554 6.554 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.138 3.862 9 H 0.102 0.898 10 C -0.151 4.151 11 C 0.098 3.902 12 H 0.114 0.886 13 C 0.170 3.830 14 N -0.596 5.596 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.064 4.064 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.067 0.933 41 H 0.254 0.746 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -6.139 -15.273 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.042 4.042 3 C -0.204 4.204 4 C 0.328 3.672 5 O -0.433 6.433 6 N -0.334 5.334 7 C -0.050 4.050 8 C 0.030 3.970 9 H 0.120 0.880 10 C -0.191 4.191 11 C -0.004 4.004 12 H 0.131 0.869 13 C 0.045 3.955 14 N -0.320 5.320 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.065 4.065 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.929 -6.179 -14.657 17.350 hybrid contribution 0.582 0.940 0.179 1.120 sum -6.347 -5.239 -14.478 16.654 Atomic orbital electron populations 1.21653 0.91404 1.03041 1.01737 1.19762 0.97449 0.96237 0.90771 1.22076 1.02860 0.92692 1.02742 1.19851 0.80988 0.79757 0.86632 1.90653 1.54659 1.48069 1.49869 1.49211 1.04323 1.58488 1.21395 1.23656 0.88525 0.99695 0.93121 1.23164 0.93973 0.89275 0.90637 0.87988 1.24150 0.97395 0.97248 1.00263 1.24317 0.91573 0.97113 0.87416 0.86854 1.22238 0.88354 0.91399 0.93498 1.45622 1.31972 1.33629 1.20793 1.19004 1.09582 1.06436 1.00625 0.90206 1.24802 0.99569 0.99847 0.95974 1.69885 1.40227 1.40684 1.05670 0.86166 0.80028 0.82752 0.76947 1.21615 1.21712 1.20693 1.19556 0.98272 0.94940 0.93702 1.21274 0.97512 0.94749 0.99259 1.21106 1.00127 0.99925 0.92424 1.21119 0.99617 0.96097 0.97359 1.21075 0.98986 0.95609 0.98260 1.20920 1.00283 0.99894 0.91661 0.91704 0.92181 0.91785 0.90515 0.91748 0.91656 0.90552 0.92041 0.91753 0.89812 0.94391 0.91540 0.93608 0.85700 0.86132 0.86326 0.86201 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 7.77 37.16 0.29 -1.32 16 2 C -0.04 -0.57 0.59 -156.81 -0.09 -0.66 16 3 C -0.15 -2.05 7.69 37.16 0.29 -1.77 16 4 C 0.54 9.77 5.11 -10.99 -0.06 9.72 16 5 O -0.55 -11.68 16.24 5.56 0.09 -11.59 16 6 N -0.60 -10.81 2.13 -156.79 -0.33 -11.14 16 7 C 0.07 1.27 4.56 -1.68 -0.01 1.26 16 8 C 0.14 2.56 5.47 -62.55 -0.34 2.22 16 9 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 10 C -0.15 -2.54 6.82 -22.31 -0.15 -2.69 16 11 C 0.10 1.88 5.25 -62.55 -0.33 1.55 16 12 H 0.11 2.12 8.04 -51.93 -0.42 1.70 16 13 C 0.17 4.00 4.92 -0.61 0.00 4.00 16 14 N -0.60 -14.11 3.09 -154.80 -0.48 -14.58 16 15 C -0.23 -6.01 10.38 -15.06 -0.16 -6.17 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 18 N -0.92 -26.49 10.79 55.49 0.60 -25.89 16 19 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.06 -0.85 3.88 -104.62 -0.41 -1.25 16 24 C -0.11 -1.47 6.49 -39.58 -0.26 -1.73 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.11 -1.23 8.78 -39.58 -0.35 -1.58 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.64 7.78 -51.93 -0.40 0.24 16 31 H 0.06 0.91 7.91 -51.93 -0.41 0.50 16 32 H 0.08 1.15 4.82 -51.93 -0.25 0.90 16 33 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 34 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.08 1.42 5.61 -51.93 -0.29 1.13 16 36 H 0.06 0.93 5.27 -51.93 -0.27 0.66 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 39 H 0.04 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.07 1.74 7.18 -51.93 -0.37 1.37 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.13 1.88 5.90 -52.49 -0.31 1.57 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.12 1.17 7.24 -52.49 -0.38 0.79 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -30.73 352.60 -9.53 -40.26 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.84 Total: 4.74 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.86 Total: -3.64 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.21 Total: -51.62 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.73 -9.53 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032770343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.421 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds