Wall clock time and date at job start Tue Mar 31 2020 11:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47037 * 2 1 4 4 C 1.50706 * 109.46891 * 119.99925 * 2 1 3 5 5 O 1.21278 * 119.99705 * 3.41343 * 4 2 1 6 6 N 1.34771 * 119.99901 * 183.41693 * 4 2 1 7 7 C 1.47866 * 126.94619 * 355.27120 * 6 4 2 8 8 C 1.56017 * 105.10224 * 182.00491 * 7 6 4 9 9 H 1.09001 * 116.25196 * 158.84085 * 8 7 6 10 10 C 1.57076 * 99.60978 * 32.80394 * 8 7 6 11 11 C 1.49299 * 126.94146 * 175.27229 * 6 4 2 12 12 H 1.09001 * 116.14908 * 16.70550 * 11 6 4 13 13 C 1.56008 * 104.09076 * 246.69650 * 11 6 4 14 14 N 1.49294 * 104.09374 * 287.92030 * 8 7 6 15 15 C 1.36938 * 126.94274 * 247.54203 * 14 8 7 16 16 H 1.07991 * 120.00512 * 5.16595 * 15 14 8 17 17 C 1.38815 * 119.99493 * 185.16423 * 15 14 8 18 18 N 1.31615 * 120.00339 * 5.31936 * 17 15 14 19 19 Si 1.86807 * 119.99735 * 185.32222 * 17 15 14 20 20 H 1.48493 * 109.47416 * 84.99719 * 19 17 15 21 21 H 1.48503 * 109.46905 * 205.00165 * 19 17 15 22 22 H 1.48503 * 109.47012 * 324.99443 * 19 17 15 23 23 C 1.50704 * 109.47260 * 239.99632 * 2 1 3 24 24 C 1.38235 * 119.99783 * 247.94089 * 23 2 1 25 25 C 1.38240 * 119.99696 * 179.79312 * 24 23 2 26 26 C 1.38228 * 119.99706 * 0.43456 * 25 24 23 27 27 C 1.38237 * 120.00686 * 359.81565 * 26 25 24 28 28 C 1.38229 * 119.99775 * 68.21399 * 23 2 1 29 29 H 1.08996 * 109.47344 * 304.81584 * 1 2 3 30 30 H 1.09004 * 109.46750 * 64.81661 * 1 2 3 31 31 H 1.09000 * 109.47440 * 184.81260 * 1 2 3 32 32 H 1.09006 * 109.46715 * 189.09637 * 3 2 1 33 33 H 1.08997 * 109.47121 * 309.09619 * 3 2 1 34 34 H 1.08998 * 109.47090 * 69.10438 * 3 2 1 35 35 H 1.08999 * 110.31702 * 63.09904 * 7 6 4 36 36 H 1.08997 * 110.39916 * 300.95404 * 7 6 4 37 37 H 1.08998 * 112.36667 * 64.27881 * 10 8 7 38 38 H 1.09007 * 112.36765 * 191.71052 * 10 8 7 39 39 H 1.08998 * 110.32004 * 47.67937 * 13 11 6 40 40 H 1.09000 * 110.31449 * 169.76465 * 13 11 6 41 41 H 0.97004 * 120.00324 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00535 * 359.97438 * 24 23 2 43 43 H 1.07999 * 120.00101 * 180.27605 * 25 24 23 44 44 H 1.08009 * 119.99771 * 179.83968 * 26 25 24 45 45 H 1.07990 * 120.00344 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00243 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2459 -1.2251 1.9970 6 7 3.3553 -0.7737 1.4792 7 6 4.4476 -0.2895 0.6080 8 6 5.7628 -0.6626 1.3596 9 1 6.6656 -0.7215 0.7515 10 6 5.2987 -1.9918 2.0562 11 6 4.0144 -1.3468 2.6901 12 1 3.3979 -1.9983 3.3095 13 6 4.6616 -0.1122 3.3905 14 7 5.8058 0.2872 2.5106 15 6 6.7018 1.3043 2.7054 16 1 7.4291 1.5369 1.9418 17 6 6.6751 2.0364 3.8845 18 7 5.8603 1.6875 4.8575 19 14 7.7956 3.5168 4.0903 20 1 7.1471 4.7146 3.4989 21 1 8.0452 3.7516 5.5353 22 1 9.0856 3.2609 3.4005 23 6 2.0324 -0.7105 -1.2304 24 6 2.6867 -1.9222 -1.1101 25 6 3.1437 -2.5760 -2.2391 26 6 2.9544 -2.0137 -3.4876 27 6 2.3046 -0.7994 -3.6075 28 6 1.8439 -0.1477 -2.4788 29 1 -0.3634 0.5867 0.8437 30 1 -0.3633 0.4373 -0.9300 31 1 -0.3634 -1.0240 0.0862 32 1 3.1178 1.4467 -0.1625 33 1 1.5501 2.0010 -0.7975 34 1 1.8155 1.9072 0.9601 35 1 4.3786 0.7907 0.4795 36 1 4.4106 -0.7883 -0.3604 37 1 5.0581 -2.7748 1.3371 38 1 6.0069 -2.3337 2.8110 39 1 3.9427 0.7042 3.4589 40 1 5.0191 -0.3848 4.3835 41 1 5.8419 2.1989 5.6816 42 1 2.8382 -2.3596 -0.1344 43 1 3.6510 -3.5249 -2.1455 44 1 3.3138 -2.5233 -4.3695 45 1 2.1571 -0.3600 -4.5829 46 1 1.3362 0.8009 -2.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032770343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:24 Heat of formation + Delta-G solvation = 38.875726 kcal Electronic energy + Delta-G solvation = -27847.320112 eV Core-core repulsion = 24317.116311 eV Total energy + Delta-G solvation = -3530.203802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20377 -40.34515 -39.21408 -36.18473 -35.37456 -33.23678 -31.80339 -30.76571 -30.65277 -30.20233 -28.19403 -26.96320 -25.95862 -24.49878 -23.48501 -22.64155 -21.49281 -21.03622 -19.88686 -18.87567 -18.28646 -17.58281 -17.14205 -16.59304 -16.12882 -16.07437 -15.80800 -15.32222 -15.12191 -14.93784 -14.58102 -14.30413 -14.09272 -13.95369 -13.68653 -13.47141 -13.27837 -13.20240 -13.02977 -12.90764 -12.84112 -12.74021 -12.66130 -12.42286 -12.19395 -12.14961 -12.02129 -11.91951 -11.75591 -11.58939 -11.49626 -10.87268 -10.63985 -9.75599 -9.58370 -9.49080 -8.88733 -7.83718 -5.20161 0.47065 0.55378 1.46820 1.48387 1.56224 1.58078 1.97125 2.48268 2.91311 3.27415 3.34379 3.44205 3.59004 3.72881 3.89727 3.95080 4.01212 4.09256 4.16490 4.18749 4.22746 4.35441 4.47915 4.61076 4.65668 4.66614 4.67274 4.78284 4.80853 4.82494 4.91225 4.95698 4.99877 5.08844 5.11052 5.16500 5.20117 5.21215 5.34497 5.41199 5.51190 5.62442 5.64145 5.68915 5.70849 6.07408 6.15465 6.64978 6.99326 7.12577 7.69173 8.43053 9.27238 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004451 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.229977 B = 6288.781344 C = 6449.433264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.033 4.033 3 C -0.142 4.142 4 C 0.533 3.467 5 O -0.592 6.592 6 N -0.601 5.601 7 C 0.090 3.910 8 C 0.132 3.868 9 H 0.128 0.872 10 C -0.129 4.129 11 C 0.100 3.900 12 H 0.114 0.886 13 C 0.184 3.816 14 N -0.613 5.613 15 C -0.227 4.227 16 H 0.094 0.906 17 C -0.069 4.069 18 N -0.955 5.955 19 Si 0.974 3.026 20 H -0.290 1.290 21 H -0.302 1.302 22 H -0.263 1.263 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.080 0.920 39 H -0.010 1.010 40 H 0.030 0.970 41 H 0.244 0.756 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -6.613 -19.594 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.199 4.199 4 C 0.323 3.677 5 O -0.473 6.473 6 N -0.332 5.332 7 C -0.034 4.034 8 C 0.026 3.974 9 H 0.146 0.854 10 C -0.168 4.168 11 C -0.003 4.003 12 H 0.131 0.869 13 C 0.058 3.942 14 N -0.338 5.338 15 C -0.356 4.356 16 H 0.112 0.888 17 C -0.261 4.261 18 N -0.605 5.605 19 Si 0.803 3.197 20 H -0.217 1.217 21 H -0.229 1.229 22 H -0.188 1.188 23 C -0.079 4.079 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.130 4.130 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.008 0.992 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.154 0.846 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.235 -6.672 -19.042 21.119 hybrid contribution 0.336 1.036 1.443 1.808 sum -5.899 -5.635 -17.599 19.398 Atomic orbital electron populations 1.21653 0.90642 1.02300 1.02895 1.19735 0.98028 0.96011 0.89810 1.22043 1.02561 0.92674 1.02573 1.20647 0.80503 0.79109 0.87448 1.90622 1.55484 1.49729 1.51506 1.49227 1.04811 1.58343 1.20853 1.23486 0.87110 0.99048 0.93791 1.23545 0.95667 0.88692 0.89543 0.85436 1.24041 0.95279 0.97164 1.00300 1.24132 0.92871 0.95388 0.87915 0.86858 1.21855 0.87733 0.91668 0.92916 1.45834 1.31371 1.34283 1.22332 1.19477 1.09289 1.06421 1.00389 0.88809 1.25619 1.01502 1.02856 0.96156 1.70120 1.42472 1.41893 1.05979 0.85146 0.78960 0.79425 0.76130 1.21714 1.22871 1.18767 1.19445 0.99560 0.95274 0.93590 1.21185 0.99292 0.95416 0.99088 1.21313 0.99872 1.00411 0.92284 1.21486 0.98628 0.96076 0.97712 1.21454 0.97637 0.95337 0.99079 1.21133 1.00227 1.00601 0.91020 0.92971 0.88918 0.93076 0.91444 0.88328 0.94224 0.92089 0.89058 0.88243 0.90144 0.99190 0.95179 0.94722 0.87977 0.84641 0.83612 0.83337 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.77 71.98 0.56 -2.49 16 2 C -0.03 -0.94 0.59 -53.67 -0.03 -0.97 16 3 C -0.14 -3.86 7.69 71.98 0.55 -3.31 16 4 C 0.53 19.78 5.11 87.66 0.45 20.23 16 5 O -0.59 -26.08 16.24 -3.02 -0.05 -26.13 16 6 N -0.60 -21.89 2.13 -768.35 -1.64 -23.53 16 7 C 0.09 2.95 4.56 87.16 0.40 3.34 16 8 C 0.13 4.70 5.47 46.93 0.26 4.96 16 9 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 10 C -0.13 -4.17 6.82 33.46 0.23 -3.94 16 11 C 0.10 3.94 5.25 46.92 0.25 4.19 16 12 H 0.11 4.45 8.04 -2.39 -0.02 4.43 16 13 C 0.18 9.19 4.92 86.79 0.43 9.62 16 14 N -0.61 -29.53 3.09 -643.68 -1.99 -31.52 16 15 C -0.23 -12.02 10.38 84.03 0.87 -11.15 16 16 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 17 C -0.07 -3.84 5.48 84.86 0.46 -3.37 16 18 N -0.96 -58.08 10.79 21.65 0.23 -57.85 16 19 Si 0.97 45.17 29.56 68.60 2.03 47.19 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 C -0.08 -1.89 3.88 -19.87 -0.08 -1.96 16 24 C -0.13 -3.25 6.49 22.27 0.14 -3.10 16 25 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 26 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 28 C -0.11 -2.08 8.78 22.27 0.20 -1.88 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.76 7.78 -2.38 -0.02 1.74 16 31 H 0.05 1.45 7.91 -2.39 -0.02 1.43 16 32 H 0.07 1.97 4.82 -2.38 -0.01 1.95 16 33 H 0.10 1.97 7.33 -2.39 -0.02 1.95 16 34 H 0.04 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.06 2.24 5.61 -2.39 -0.01 2.23 16 36 H 0.09 2.53 5.27 -2.39 -0.01 2.52 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 39 H -0.01 -0.60 8.05 -2.39 -0.02 -0.61 16 40 H 0.03 1.70 7.18 -2.39 -0.02 1.69 16 41 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.10 2.97 5.90 -2.91 -0.02 2.95 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.15 1.43 8.06 -2.92 -0.02 1.41 16 46 H 0.14 2.03 7.24 -2.91 -0.02 2.01 16 Total: -1.00 -71.32 352.60 4.92 -66.40 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.97 Total: 20.61 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.36 Total: 4.82 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -3.39 Total: -112.89 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.32 4.92 -66.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032770343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.274 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds