Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38261 * 119.99961 * 2 1 4 4 C 1.38217 * 120.00039 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.38208 * 120.00126 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99915 * 359.72258 * 7 2 1 9 9 H 1.08997 * 109.46923 * 6.46331 * 8 7 2 10 10 C 1.52997 * 109.47309 * 246.46459 * 8 7 2 11 11 C 1.50694 * 109.46995 * 126.46270 * 8 7 2 12 12 O 1.21286 * 120.00075 * 83.47504 * 11 8 7 13 13 N 1.34778 * 120.00327 * 263.47659 * 11 8 7 14 14 C 1.47872 * 126.94280 * 4.78769 * 13 11 8 15 15 C 1.55991 * 105.11416 * 181.87712 * 14 13 11 16 16 H 1.09003 * 116.81339 * 159.42042 * 15 14 13 17 17 C 1.57082 * 99.47878 * 33.16147 * 15 14 13 18 18 C 1.49290 * 126.94885 * 185.10203 * 13 11 8 19 19 H 1.09000 * 116.15132 * 16.69517 * 18 13 11 20 20 C 1.56018 * 104.09266 * 246.70144 * 18 13 11 21 21 N 1.47877 * 105.10314 * 288.76561 * 20 18 13 22 22 C 1.36928 * 126.94877 * 181.98517 * 21 20 18 23 23 H 1.07997 * 120.00315 * 185.50199 * 22 21 20 24 24 C 1.38817 * 119.99854 * 5.49205 * 22 21 20 25 25 N 1.31618 * 120.00144 * 6.30644 * 24 22 21 26 26 Si 1.86803 * 120.00117 * 186.30157 * 24 22 21 27 27 H 1.48500 * 109.47063 * 94.99294 * 26 24 22 28 28 H 1.48498 * 109.47106 * 214.99527 * 26 24 22 29 29 H 1.48507 * 109.47040 * 334.99499 * 26 24 22 30 30 H 1.09004 * 109.47376 * 270.06274 * 1 2 3 31 31 H 1.09004 * 109.47123 * 30.06001 * 1 2 3 32 32 H 1.09000 * 109.47268 * 150.05809 * 1 2 3 33 33 H 1.08001 * 119.99985 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.00484 * 179.97438 * 4 3 2 35 35 H 1.08001 * 119.99428 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99465 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.47161 * 64.50110 * 10 8 7 38 38 H 1.08999 * 109.47065 * 184.50299 * 10 8 7 39 39 H 1.09000 * 109.47030 * 304.50548 * 10 8 7 40 40 H 1.09008 * 110.31276 * 300.90759 * 14 13 11 41 41 H 1.09003 * 110.31529 * 63.09331 * 14 13 11 42 42 H 1.09000 * 112.36599 * 191.51597 * 17 15 14 43 43 H 1.08999 * 112.44146 * 64.09526 * 17 15 14 44 44 H 1.08998 * 110.31754 * 47.66691 * 20 18 13 45 45 H 1.08994 * 110.31774 * 169.85988 * 20 18 13 46 46 H 0.96994 * 120.00243 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5805 -1.1969 0.0005 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0074 9 1 0.3781 -2.3064 -0.1043 10 6 1.6938 -3.2279 1.3310 11 6 1.9198 -3.3625 -1.1347 12 8 2.9171 -4.0411 -1.0086 13 7 1.2367 -3.3780 -2.2965 14 6 0.0677 -2.5448 -2.6513 15 6 -0.3436 -3.0096 -4.0824 16 1 -1.3627 -2.7858 -4.3982 17 6 0.0413 -4.5292 -3.9815 18 6 1.5033 -4.2443 -3.4827 19 1 2.1365 -5.1145 -3.3096 20 6 1.9651 -3.2442 -4.5875 21 7 0.7461 -2.4968 -4.9647 22 6 0.6387 -1.5297 -5.9281 23 1 -0.2893 -0.9913 -6.0516 24 6 1.7226 -1.2412 -6.7458 25 7 2.8110 -1.9785 -6.6805 26 14 1.6367 0.1934 -7.9391 27 1 2.2419 1.3958 -7.3120 28 1 2.3822 -0.1473 -9.1774 29 1 0.2176 0.4723 -8.2765 30 1 -0.3634 0.0011 1.0277 31 1 -0.3633 0.8895 -0.5148 32 1 -0.3634 -0.8905 -0.5129 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.3516 0.0000 0.0005 36 1 4.1206 -2.1322 0.0010 37 1 1.2782 -2.6419 2.1507 38 1 1.2146 -4.2066 1.3045 39 1 2.7663 -3.3524 1.4806 40 1 -0.7466 -2.7159 -1.9472 41 1 0.3440 -1.4905 -2.6628 42 1 0.0234 -5.0269 -4.9511 43 1 -0.5541 -5.0608 -3.2392 44 1 2.7186 -2.5637 -4.1909 45 1 2.3584 -3.7857 -5.4478 46 1 3.5682 -1.7772 -7.2522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032797398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = 42.121075 kcal Electronic energy + Delta-G solvation = -27507.246357 eV Core-core repulsion = 23977.183285 eV Total energy + Delta-G solvation = -3530.063073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45347 -39.32370 -37.75784 -34.12083 -33.55297 -32.44767 -31.42989 -29.47918 -29.02182 -28.54039 -26.80426 -25.21606 -24.73471 -23.38399 -22.08307 -21.06645 -19.98158 -19.70669 -18.33723 -17.31160 -16.60499 -16.33244 -15.68738 -15.25549 -15.07647 -14.40913 -14.32603 -13.99484 -13.85820 -13.52507 -13.28919 -13.09562 -12.99881 -12.49982 -12.34415 -12.06724 -12.05231 -11.84906 -11.74892 -11.69790 -11.39240 -11.26909 -11.00513 -10.89327 -10.83954 -10.74492 -10.57832 -10.52526 -10.25311 -10.08102 -9.64473 -9.42769 -8.71792 -8.61595 -8.41699 -7.97960 -6.91272 -5.74847 -3.11766 1.44385 1.54542 3.05064 3.37208 3.40930 3.41890 3.44786 3.89312 4.42034 4.73959 4.76547 4.93325 5.03048 5.06202 5.14664 5.19282 5.25479 5.33537 5.37464 5.41059 5.56612 5.58907 5.62844 5.65194 5.73937 5.78133 5.80107 5.85585 5.91264 5.95236 6.15536 6.18472 6.22889 6.25177 6.29660 6.42075 6.49930 6.59659 6.60196 6.67151 6.70591 6.78204 7.14814 7.41447 7.52143 7.71827 8.10611 8.13547 8.61284 9.09978 9.71763 10.40972 11.35174 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.005401 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.055197 B = 5183.101005 C = 6261.423348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.072 4.072 8 C -0.072 4.072 9 H 0.098 0.902 10 C -0.127 4.127 11 C 0.536 3.464 12 O -0.553 6.553 13 N -0.604 5.604 14 C 0.084 3.916 15 C 0.140 3.860 16 H 0.106 0.894 17 C -0.152 4.152 18 C 0.098 3.902 19 H 0.112 0.888 20 C 0.171 3.829 21 N -0.594 5.594 22 C -0.231 4.231 23 H 0.080 0.920 24 C -0.005 4.005 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 1.173 15.020 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.117 4.117 7 C -0.073 4.073 8 C -0.093 4.093 9 H 0.116 0.884 10 C -0.184 4.184 11 C 0.325 3.675 12 O -0.432 6.432 13 N -0.337 5.337 14 C -0.041 4.041 15 C 0.031 3.969 16 H 0.124 0.876 17 C -0.192 4.192 18 C -0.004 4.004 19 H 0.130 0.870 20 C 0.046 3.954 21 N -0.318 5.318 22 C -0.359 4.359 23 H 0.098 0.902 24 C -0.202 4.202 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.683 0.949 14.938 15.683 hybrid contribution 0.180 0.966 -0.734 1.226 sum -4.503 1.915 14.204 15.023 Atomic orbital electron populations 1.20919 0.91405 1.03243 1.02093 1.19702 0.95921 0.92457 0.99565 1.20941 0.94250 0.97198 1.01549 1.21109 0.94352 0.97931 1.00151 1.21098 0.99820 0.92437 1.00908 1.21157 0.93723 0.98713 0.98137 1.19233 0.93627 0.92729 1.01685 1.20340 1.01016 0.92937 0.95030 0.88435 1.21624 1.03221 0.99468 0.94130 1.19963 0.83104 0.82182 0.82293 1.90635 1.25282 1.44982 1.82311 1.49239 1.31507 1.39162 1.13785 1.23313 0.86763 0.95544 0.98526 1.23161 0.94020 0.91387 0.88332 0.87600 1.24177 0.95896 0.98180 1.00923 1.24336 0.97146 0.94402 0.84539 0.86984 1.21953 0.88635 0.91689 0.93135 1.45211 1.03512 1.43471 1.39644 1.19029 0.98474 1.10269 1.08142 0.90223 1.24819 0.96557 0.99416 0.99394 1.69906 1.05138 1.39483 1.41769 0.86125 0.77342 0.82039 0.80384 1.21696 1.21728 1.20537 0.91246 0.91265 0.91037 0.86185 0.86309 0.86224 0.85341 0.92022 0.92213 0.91378 0.92995 0.91010 0.89745 0.91739 0.94653 0.91364 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.45 36.00 0.34 -0.98 16 2 C -0.08 -1.06 5.88 -104.63 -0.62 -1.67 16 3 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 4 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 5 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 6 C -0.10 -1.59 8.75 -39.58 -0.35 -1.93 16 7 C -0.07 -1.10 4.78 -104.62 -0.50 -1.60 16 8 C -0.07 -1.05 2.41 -92.93 -0.22 -1.27 16 9 H 0.10 1.25 4.28 -51.93 -0.22 1.03 16 10 C -0.13 -1.58 8.72 37.16 0.32 -1.26 16 11 C 0.54 9.84 6.44 -10.99 -0.07 9.77 16 12 O -0.55 -11.67 15.85 5.55 0.09 -11.58 16 13 N -0.60 -11.22 2.95 -156.80 -0.46 -11.69 16 14 C 0.08 1.42 5.04 -1.69 -0.01 1.41 16 15 C 0.14 2.58 5.52 -62.56 -0.35 2.24 16 16 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 17 C -0.15 -2.59 6.80 -22.31 -0.15 -2.74 16 18 C 0.10 1.93 5.23 -62.55 -0.33 1.60 16 19 H 0.11 2.15 8.08 -51.93 -0.42 1.73 16 20 C 0.17 4.17 4.86 -1.67 -0.01 4.16 16 21 N -0.59 -14.33 3.03 -156.35 -0.47 -14.81 16 22 C -0.23 -6.17 10.36 -15.06 -0.16 -6.32 16 23 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 24 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.91 10.66 55.49 0.59 -26.31 16 26 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.07 0.80 5.07 -51.93 -0.26 0.53 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.13 2.16 6.99 -52.49 -0.37 1.80 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.92 7.51 -51.93 -0.39 0.53 16 40 H 0.05 0.70 7.61 -51.92 -0.40 0.31 16 41 H 0.07 1.36 7.99 -51.93 -0.42 0.94 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 1.00 8.05 -51.93 -0.42 0.58 16 45 H 0.07 1.84 7.02 -51.93 -0.36 1.48 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -32.03 362.73 -10.20 -42.23 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.03 Total: 4.79 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.36 Total: -4.96 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.34 Total: -52.81 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.03 -10.20 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032797398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.354 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds