Wall clock time and date at job start Tue Mar 31 2020 10:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38261 * 119.99961 * 2 1 4 4 C 1.38217 * 120.00039 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.38208 * 120.00126 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99915 * 359.72258 * 7 2 1 9 9 H 1.08997 * 109.46923 * 6.46331 * 8 7 2 10 10 C 1.52997 * 109.47309 * 246.46459 * 8 7 2 11 11 C 1.50694 * 109.46995 * 126.46270 * 8 7 2 12 12 O 1.21286 * 120.00075 * 83.47504 * 11 8 7 13 13 N 1.34778 * 120.00327 * 263.47659 * 11 8 7 14 14 C 1.47872 * 126.94280 * 4.78769 * 13 11 8 15 15 C 1.55991 * 105.11416 * 181.87712 * 14 13 11 16 16 H 1.09003 * 116.81339 * 159.42042 * 15 14 13 17 17 C 1.57082 * 99.47878 * 33.16147 * 15 14 13 18 18 C 1.49290 * 126.94885 * 185.10203 * 13 11 8 19 19 H 1.09000 * 116.15132 * 16.69517 * 18 13 11 20 20 C 1.56018 * 104.09266 * 246.70144 * 18 13 11 21 21 N 1.47877 * 105.10314 * 288.76561 * 20 18 13 22 22 C 1.36928 * 126.94877 * 181.98517 * 21 20 18 23 23 H 1.07997 * 120.00315 * 185.50199 * 22 21 20 24 24 C 1.38817 * 119.99854 * 5.49205 * 22 21 20 25 25 N 1.31618 * 120.00144 * 6.30644 * 24 22 21 26 26 Si 1.86803 * 120.00117 * 186.30157 * 24 22 21 27 27 H 1.48500 * 109.47063 * 94.99294 * 26 24 22 28 28 H 1.48498 * 109.47106 * 214.99527 * 26 24 22 29 29 H 1.48507 * 109.47040 * 334.99499 * 26 24 22 30 30 H 1.09004 * 109.47376 * 270.06274 * 1 2 3 31 31 H 1.09004 * 109.47123 * 30.06001 * 1 2 3 32 32 H 1.09000 * 109.47268 * 150.05809 * 1 2 3 33 33 H 1.08001 * 119.99985 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.00484 * 179.97438 * 4 3 2 35 35 H 1.08001 * 119.99428 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.99465 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.47161 * 64.50110 * 10 8 7 38 38 H 1.08999 * 109.47065 * 184.50299 * 10 8 7 39 39 H 1.09000 * 109.47030 * 304.50548 * 10 8 7 40 40 H 1.09008 * 110.31276 * 300.90759 * 14 13 11 41 41 H 1.09003 * 110.31529 * 63.09331 * 14 13 11 42 42 H 1.09000 * 112.36599 * 191.51597 * 17 15 14 43 43 H 1.08999 * 112.44146 * 64.09526 * 17 15 14 44 44 H 1.08998 * 110.31754 * 47.66691 * 20 18 13 45 45 H 1.08994 * 110.31774 * 169.85988 * 20 18 13 46 46 H 0.96994 * 120.00243 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5805 -1.1969 0.0005 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0074 9 1 0.3781 -2.3064 -0.1043 10 6 1.6938 -3.2279 1.3310 11 6 1.9198 -3.3625 -1.1347 12 8 2.9171 -4.0411 -1.0086 13 7 1.2367 -3.3780 -2.2965 14 6 0.0677 -2.5448 -2.6513 15 6 -0.3436 -3.0096 -4.0824 16 1 -1.3627 -2.7858 -4.3982 17 6 0.0413 -4.5292 -3.9815 18 6 1.5033 -4.2443 -3.4827 19 1 2.1365 -5.1145 -3.3096 20 6 1.9651 -3.2442 -4.5875 21 7 0.7461 -2.4968 -4.9647 22 6 0.6387 -1.5297 -5.9281 23 1 -0.2893 -0.9913 -6.0516 24 6 1.7226 -1.2412 -6.7458 25 7 2.8110 -1.9785 -6.6805 26 14 1.6367 0.1934 -7.9391 27 1 2.2419 1.3958 -7.3120 28 1 2.3822 -0.1473 -9.1774 29 1 0.2176 0.4723 -8.2765 30 1 -0.3634 0.0011 1.0277 31 1 -0.3633 0.8895 -0.5148 32 1 -0.3634 -0.8905 -0.5129 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.3516 0.0000 0.0005 36 1 4.1206 -2.1322 0.0010 37 1 1.2782 -2.6419 2.1507 38 1 1.2146 -4.2066 1.3045 39 1 2.7663 -3.3524 1.4806 40 1 -0.7466 -2.7159 -1.9472 41 1 0.3440 -1.4905 -2.6628 42 1 0.0234 -5.0269 -4.9511 43 1 -0.5541 -5.0608 -3.2392 44 1 2.7186 -2.5637 -4.1909 45 1 2.3584 -3.7857 -5.4478 46 1 3.5682 -1.7772 -7.2522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032797398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:49 Heat of formation + Delta-G solvation = 24.433780 kcal Electronic energy + Delta-G solvation = -27508.013336 eV Core-core repulsion = 23977.183285 eV Total energy + Delta-G solvation = -3530.830051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.85127 -40.60423 -39.19804 -35.52101 -35.17819 -33.46602 -33.18032 -30.82838 -30.42492 -30.23897 -27.75195 -26.97316 -26.05112 -24.92888 -23.36112 -22.26503 -21.45625 -21.21552 -19.89621 -18.85047 -18.10231 -17.61389 -17.34818 -16.56391 -16.38693 -16.06168 -15.70062 -15.45267 -15.08723 -14.89244 -14.67977 -14.28607 -14.03549 -13.81605 -13.72431 -13.49213 -13.30473 -13.16766 -13.05485 -12.98745 -12.81274 -12.74770 -12.70313 -12.47437 -12.30029 -12.13433 -12.02323 -11.96716 -11.88751 -11.59450 -11.53125 -10.91277 -10.69902 -9.73355 -9.53363 -9.49240 -8.90872 -7.83117 -5.21627 0.35241 0.44703 1.44704 1.46453 1.55214 1.62894 2.00729 2.47540 2.79622 3.30911 3.37686 3.57822 3.65459 3.80417 3.89247 3.92786 4.01855 4.02445 4.09372 4.19631 4.20854 4.27864 4.45067 4.57052 4.60182 4.67254 4.76817 4.79179 4.86126 4.88379 4.90050 4.94058 4.98787 5.03117 5.11621 5.14322 5.23137 5.26499 5.33569 5.42161 5.51736 5.55203 5.58093 5.64351 5.69240 6.09501 6.10394 6.68207 7.01514 7.16935 7.70734 8.41553 9.25751 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.005401 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.055197 B = 5183.101005 C = 6261.423348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.089 4.089 8 C -0.062 4.062 9 H 0.124 0.876 10 C -0.123 4.123 11 C 0.529 3.471 12 O -0.590 6.590 13 N -0.608 5.608 14 C 0.092 3.908 15 C 0.134 3.866 16 H 0.138 0.862 17 C -0.128 4.128 18 C 0.099 3.901 19 H 0.110 0.890 20 C 0.186 3.814 21 N -0.613 5.613 22 C -0.227 4.227 23 H 0.097 0.903 24 C -0.073 4.073 25 N -0.956 5.956 26 Si 0.973 3.027 27 H -0.296 1.296 28 H -0.301 1.301 29 H -0.257 1.257 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.106 0.894 44 H -0.022 1.022 45 H 0.029 0.971 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 2.348 16.648 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.144 4.144 7 C -0.090 4.090 8 C -0.082 4.082 9 H 0.141 0.859 10 C -0.180 4.180 11 C 0.319 3.681 12 O -0.472 6.472 13 N -0.341 5.341 14 C -0.032 4.032 15 C 0.028 3.972 16 H 0.156 0.844 17 C -0.168 4.168 18 C -0.005 4.005 19 H 0.128 0.872 20 C 0.059 3.941 21 N -0.338 5.338 22 C -0.356 4.356 23 H 0.114 0.886 24 C -0.265 4.265 25 N -0.606 5.606 26 Si 0.803 3.197 27 H -0.224 1.224 28 H -0.228 1.228 29 H -0.181 1.181 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.124 0.876 44 H -0.004 1.004 45 H 0.047 0.953 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.674 2.128 16.597 18.847 hybrid contribution 1.427 0.617 -1.204 1.966 sum -7.247 2.745 15.393 17.234 Atomic orbital electron populations 1.20993 0.88957 1.03704 1.03854 1.20106 0.97786 0.91891 0.98402 1.21368 0.94371 0.98291 1.00574 1.21462 0.94984 0.98328 0.99209 1.21325 1.00621 0.92654 1.01369 1.21171 0.94733 0.98408 1.00087 1.19386 0.93292 0.93767 1.02533 1.20376 1.02026 0.91890 0.93934 0.85878 1.21627 1.02265 1.00183 0.93961 1.20787 0.82374 0.81944 0.83030 1.90614 1.26855 1.46585 1.83108 1.49345 1.32158 1.39194 1.13378 1.23244 0.87341 0.93989 0.98674 1.23612 0.93867 0.91949 0.87756 0.84432 1.24073 0.93529 0.97501 1.01658 1.24144 0.99147 0.93304 0.83876 0.87181 1.21515 0.88171 0.91268 0.93102 1.45461 1.05114 1.43217 1.39971 1.19534 0.98544 1.10046 1.07447 0.88561 1.25671 0.96668 1.02205 1.01965 1.70157 1.05829 1.41520 1.43045 0.85117 0.78167 0.78676 0.77786 1.22384 1.22787 1.18063 0.88716 0.90312 0.90982 0.83475 0.83865 0.85319 0.87698 0.89256 0.91449 0.93377 0.87671 0.93036 0.90340 0.87572 1.00352 0.95334 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.45 71.23 0.67 -1.45 16 2 C -0.08 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.13 -3.11 9.70 22.27 0.22 -2.89 16 4 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 5 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 6 C -0.13 -4.19 8.75 22.27 0.19 -3.99 16 7 C -0.09 -2.65 4.78 -19.87 -0.09 -2.75 16 8 C -0.06 -1.68 2.41 -12.29 -0.03 -1.71 16 9 H 0.12 2.67 4.28 -2.39 -0.01 2.66 16 10 C -0.12 -2.86 8.72 71.98 0.63 -2.23 16 11 C 0.53 19.29 6.44 87.65 0.56 19.85 16 12 O -0.59 -25.83 15.85 -3.05 -0.05 -25.88 16 13 N -0.61 -22.00 2.95 -768.37 -2.26 -24.26 16 14 C 0.09 2.81 5.04 87.15 0.44 3.25 16 15 C 0.13 4.56 5.52 46.92 0.26 4.82 16 16 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 17 C -0.13 -4.01 6.80 33.46 0.23 -3.79 16 18 C 0.10 3.90 5.23 46.93 0.25 4.15 16 19 H 0.11 4.36 8.08 -2.39 -0.02 4.34 16 20 C 0.19 9.52 4.86 87.16 0.42 9.94 16 21 N -0.61 -29.58 3.03 -648.58 -1.96 -31.54 16 22 C -0.23 -12.06 10.36 84.04 0.87 -11.19 16 23 H 0.10 4.69 7.84 -2.91 -0.02 4.67 16 24 C -0.07 -4.12 5.47 84.86 0.46 -3.65 16 25 N -0.96 -59.26 10.66 21.65 0.23 -59.03 16 26 Si 0.97 45.71 29.56 68.60 2.03 47.73 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.27 8.09 -2.38 -0.02 1.25 16 32 H 0.07 1.27 5.07 -2.39 -0.01 1.26 16 33 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.10 3.88 6.99 -2.91 -0.02 3.86 16 37 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.31 7.51 -2.39 -0.02 1.29 16 40 H 0.11 2.20 7.61 -2.38 -0.02 2.18 16 41 H 0.05 1.83 7.99 -2.39 -0.02 1.81 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 44 H -0.02 -1.33 8.05 -2.39 -0.02 -1.35 16 45 H 0.03 1.66 7.02 -2.39 -0.02 1.65 16 46 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -75.77 362.73 4.36 -71.40 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.97 Total: 22.27 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.41 Total: -0.69 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -4.00 Total: -114.84 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.77 4.36 -71.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032797398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.838 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds