Wall clock time and date at job start Tue Mar 31 2020 11:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47671 * 119.99868 * 2 1 4 4 C 1.39711 * 119.99732 * 179.97438 * 3 2 1 5 5 C 1.37593 * 120.00711 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.47684 * 120.00712 * 180.02562 * 6 5 4 8 8 O 1.21572 * 120.00152 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99915 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00073 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47149 * 35.00003 * 10 9 7 12 12 C 1.52997 * 109.47426 * 154.99826 * 10 9 7 13 13 C 1.52994 * 109.47259 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47173 * 299.99870 * 13 12 10 15 15 H 1.08995 * 109.47205 * 300.00026 * 14 13 12 16 16 N 1.46498 * 109.47216 * 179.97438 * 14 13 12 17 17 C 1.36936 * 119.99972 * 155.00001 * 16 14 13 18 18 H 1.08002 * 119.99631 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00202 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 179.72570 * 19 17 16 22 22 H 1.48494 * 109.47228 * 180.27680 * 21 19 17 23 23 H 1.48500 * 109.47000 * 300.27564 * 21 19 17 24 24 H 1.48493 * 109.46907 * 60.27455 * 21 19 17 25 25 C 1.52997 * 109.46922 * 59.99923 * 14 13 12 26 26 C 1.52999 * 109.46797 * 274.99803 * 10 9 7 27 27 C 1.39745 * 119.98858 * 0.28044 * 6 5 4 28 28 C 1.37610 * 119.99515 * 359.41665 * 27 6 5 29 29 H 1.08001 * 120.00226 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00273 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00578 * 180.02562 * 2 1 3 32 32 H 1.08010 * 119.99438 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.00650 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99878 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46812 * 59.99970 * 12 10 9 36 36 H 1.09004 * 109.47023 * 300.00136 * 12 10 9 37 37 H 1.09002 * 109.47650 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.47579 * 59.99817 * 13 12 10 39 39 H 0.97001 * 120.00384 * 335.00817 * 16 14 13 40 40 H 0.97005 * 119.99717 * 359.71965 * 20 19 17 41 41 H 1.09009 * 109.47238 * 60.00138 * 25 14 13 42 42 H 1.08997 * 109.47293 * 180.02562 * 25 14 13 43 43 H 1.08995 * 109.47266 * 299.99780 * 26 10 9 44 44 H 1.08997 * 109.46923 * 60.00291 * 26 10 9 45 45 H 1.08003 * 120.00579 * 179.70248 * 27 6 5 46 46 H 1.07998 * 119.99795 * 180.29713 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2789 0.0005 5 6 4.1503 2.4703 0.0000 6 6 3.4517 3.6807 -0.0005 7 6 4.1901 4.9597 -0.0017 8 8 5.4058 4.9597 -0.0026 9 7 3.5162 6.1268 -0.0017 10 6 4.2486 7.3956 -0.0034 11 1 5.1587 7.2890 -0.5938 12 6 3.3708 8.4905 -0.6127 13 6 4.1355 9.8156 -0.6139 14 6 4.5005 10.1952 0.8227 15 1 3.5903 10.3015 1.4128 16 7 5.2332 11.4637 0.8215 17 6 5.2252 12.2600 1.9355 18 1 4.6790 11.9527 2.8151 19 6 5.9191 13.4622 1.9343 20 7 6.5843 13.8371 0.8621 21 14 5.9019 14.5522 3.4512 22 1 6.7074 15.7727 3.1930 23 1 4.5034 14.9396 3.7665 24 1 6.4811 13.8107 4.6000 25 6 5.3783 9.1002 1.4321 26 6 4.6141 7.7753 1.4330 27 6 2.0543 3.6805 0.0054 28 6 1.3664 2.4887 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8669 -0.9353 -0.0004 32 1 4.0021 0.3434 0.0014 33 1 5.2304 2.4703 0.0000 34 1 2.5462 6.1268 -0.0005 35 1 2.4607 8.5971 -0.0223 36 1 3.1104 8.2199 -1.6360 37 1 3.5100 10.5958 -1.0476 38 1 5.0457 9.7094 -1.2040 39 1 5.7240 11.7397 0.0317 40 1 6.5930 13.2712 0.0743 41 1 6.2887 8.9939 0.8419 42 1 5.6380 9.3703 2.4556 43 1 3.7041 7.8820 2.0233 44 1 5.2396 6.9953 1.8670 45 1 1.5141 4.6158 0.0098 46 1 0.2864 2.4886 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034741174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:00 Heat of formation + Delta-G solvation = 4.223987 kcal Electronic energy + Delta-G solvation = -24931.546336 eV Core-core repulsion = 21399.839922 eV Total energy + Delta-G solvation = -3531.706414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54616 -39.15006 -37.87872 -35.05733 -34.62944 -33.31951 -31.54363 -30.65711 -30.47220 -29.77597 -27.15874 -24.62539 -23.37326 -23.09908 -22.40224 -21.52587 -20.70409 -20.05077 -19.59225 -18.21218 -17.19374 -16.79176 -16.18296 -15.49104 -15.26272 -15.14136 -14.98745 -14.41937 -13.93840 -13.87165 -13.74086 -13.68882 -13.55853 -13.51203 -13.13144 -12.73187 -12.52957 -12.15165 -11.85904 -11.75657 -11.35019 -11.33203 -11.13451 -10.82731 -10.79114 -10.72378 -10.45955 -10.16570 -10.02274 -9.94037 -9.88064 -9.43228 -9.14167 -9.03486 -8.84312 -8.66151 -6.99532 -6.06641 -3.06065 0.16306 0.98444 1.82399 2.83019 3.01474 3.53355 3.57107 3.61440 3.74511 4.20276 4.26469 4.45096 4.55589 4.69450 4.73559 4.85012 4.90035 4.98247 5.00154 5.20347 5.23986 5.37579 5.52597 5.55320 5.57781 5.63757 5.66774 5.74384 5.79632 5.81862 5.84285 5.93604 5.99277 6.07652 6.16231 6.20407 6.23815 6.26537 6.40157 6.45547 6.49824 6.57523 6.66951 6.93371 7.09067 7.39211 7.84421 8.09934 8.79290 9.27100 10.13432 10.28721 11.41878 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.002070 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.715525 B =13524.700782 C =13620.413180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.118 4.118 5 C -0.058 4.058 6 C -0.132 4.132 7 C 0.555 3.445 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.145 3.855 11 H 0.089 0.911 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.182 3.818 15 H 0.047 0.953 16 N -0.737 5.737 17 C -0.328 4.328 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.296 1.296 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.084 4.084 28 C -0.124 4.124 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.366 0.634 40 H 0.255 0.745 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -27.875 -3.760 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.038 4.038 4 C -0.135 4.135 5 C -0.077 4.077 6 C -0.135 4.135 7 C 0.342 3.658 8 O -0.412 6.412 9 N -0.371 5.371 10 C 0.042 3.958 11 H 0.107 0.893 12 C -0.157 4.157 13 C -0.160 4.160 14 C 0.073 3.927 15 H 0.065 0.935 16 N -0.379 5.379 17 C -0.459 4.459 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.591 5.591 21 Si 0.910 3.090 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.172 4.172 26 C -0.163 4.163 27 C -0.102 4.102 28 C -0.141 4.141 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.199 0.801 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.146 0.854 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.602 -26.422 -2.919 29.419 hybrid contribution -0.919 -1.489 -0.769 1.912 sum -13.522 -27.911 -3.688 31.233 Atomic orbital electron populations 1.24477 0.95672 1.02527 0.98132 1.21847 0.95294 0.95763 1.01263 1.19328 0.93435 0.93285 0.97785 1.21256 0.93165 0.98254 1.00874 1.21244 1.01001 0.90718 0.94757 1.20099 0.93675 0.93881 1.05844 1.18246 0.87336 0.83740 0.76483 1.90796 1.13365 1.87533 1.49518 1.46087 1.10175 1.05867 1.74953 1.21132 0.95702 0.81198 0.97784 0.89338 1.21742 0.98683 0.94828 1.00451 1.21765 0.99988 0.95220 0.99050 1.20177 0.93828 0.85978 0.92763 0.93489 1.42437 1.60459 1.19427 1.15541 1.20034 1.30141 1.02446 0.93323 0.91841 1.25752 0.97555 0.96983 1.04147 1.70880 1.44384 1.39966 1.03823 0.83251 0.75682 0.76142 0.73910 1.21067 1.22333 1.22323 1.22193 0.99226 0.93532 1.02268 1.21885 1.00567 0.98504 0.95311 1.21237 0.92998 0.98479 0.97520 1.21219 1.00143 0.91476 1.01304 0.87530 0.87870 0.86124 0.85096 0.84384 0.76863 0.91513 0.91774 0.91413 0.92058 0.80065 0.93399 0.92628 0.91731 0.92264 0.92243 0.85411 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 14.15 28.84 0.41 -0.38 16 2 C -0.12 -0.71 9.90 -37.62 -0.37 -1.08 16 3 C -0.04 -0.29 5.87 -104.95 -0.62 -0.90 16 4 C -0.12 -0.94 9.76 -39.27 -0.38 -1.32 16 5 C -0.06 -0.58 9.57 -39.25 -0.38 -0.96 16 6 C -0.13 -1.39 5.88 -104.91 -0.62 -2.01 16 7 C 0.55 7.29 7.73 -12.40 -0.10 7.19 16 8 O -0.53 -9.11 15.99 5.30 0.08 -9.02 16 9 N -0.72 -8.13 5.03 -54.80 -0.28 -8.41 16 10 C 0.15 1.97 2.45 -67.93 -0.17 1.80 16 11 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 12 C -0.12 -1.47 5.39 -26.74 -0.14 -1.62 16 13 C -0.12 -1.95 5.39 -26.73 -0.14 -2.09 16 14 C 0.18 3.62 2.77 -67.93 -0.19 3.43 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.74 -18.57 5.12 -53.43 -0.27 -18.84 16 17 C -0.33 -9.30 9.93 -15.06 -0.15 -9.45 16 18 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 20 N -0.94 -29.56 13.70 55.49 0.76 -28.80 16 21 Si 1.08 26.25 29.92 -169.99 -5.09 21.16 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.13 -2.45 5.50 -26.76 -0.15 -2.60 16 26 C -0.12 -1.88 5.49 -26.76 -0.15 -2.03 16 27 C -0.08 -0.67 9.52 -39.25 -0.37 -1.04 16 28 C -0.12 -0.89 9.38 -39.26 -0.37 -1.26 16 29 H 0.11 0.34 8.06 -52.49 -0.42 -0.09 16 30 H 0.10 0.41 6.02 -52.49 -0.32 0.10 16 31 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.14 1.41 7.64 -52.48 -0.40 1.01 16 34 H 0.40 3.26 6.62 -40.82 -0.27 2.99 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.37 9.54 6.63 -40.82 -0.27 9.27 16 40 H 0.25 7.85 6.77 -40.82 -0.28 7.57 16 41 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.13 0.72 6.38 -52.48 -0.34 0.39 16 46 H 0.13 0.65 6.15 -52.49 -0.32 0.33 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -34.38 374.28 -9.99 -44.37 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.86 Total: 9.70 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.98 Total: -15.80 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.21 Total: -56.05 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.38 -9.99 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034741174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds