Wall clock time and date at job start Tue Mar 31 2020 11:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47671 * 119.99868 * 2 1 4 4 C 1.39711 * 119.99732 * 179.97438 * 3 2 1 5 5 C 1.37593 * 120.00711 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.47684 * 120.00712 * 180.02562 * 6 5 4 8 8 O 1.21572 * 120.00152 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99915 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00073 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47149 * 35.00003 * 10 9 7 12 12 C 1.52997 * 109.47426 * 154.99826 * 10 9 7 13 13 C 1.52994 * 109.47259 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47173 * 299.99870 * 13 12 10 15 15 H 1.08995 * 109.47205 * 300.00026 * 14 13 12 16 16 N 1.46498 * 109.47216 * 179.97438 * 14 13 12 17 17 C 1.36936 * 119.99972 * 155.00001 * 16 14 13 18 18 H 1.08002 * 119.99631 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00202 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 179.72570 * 19 17 16 22 22 H 1.48494 * 109.47228 * 180.27680 * 21 19 17 23 23 H 1.48500 * 109.47000 * 300.27564 * 21 19 17 24 24 H 1.48493 * 109.46907 * 60.27455 * 21 19 17 25 25 C 1.52997 * 109.46922 * 59.99923 * 14 13 12 26 26 C 1.52999 * 109.46797 * 274.99803 * 10 9 7 27 27 C 1.39745 * 119.98858 * 0.28044 * 6 5 4 28 28 C 1.37610 * 119.99515 * 359.41665 * 27 6 5 29 29 H 1.08001 * 120.00226 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00273 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00578 * 180.02562 * 2 1 3 32 32 H 1.08010 * 119.99438 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.00650 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99878 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46812 * 59.99970 * 12 10 9 36 36 H 1.09004 * 109.47023 * 300.00136 * 12 10 9 37 37 H 1.09002 * 109.47650 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.47579 * 59.99817 * 13 12 10 39 39 H 0.97001 * 120.00384 * 335.00817 * 16 14 13 40 40 H 0.97005 * 119.99717 * 359.71965 * 20 19 17 41 41 H 1.09009 * 109.47238 * 60.00138 * 25 14 13 42 42 H 1.08997 * 109.47293 * 180.02562 * 25 14 13 43 43 H 1.08995 * 109.47266 * 299.99780 * 26 10 9 44 44 H 1.08997 * 109.46923 * 60.00291 * 26 10 9 45 45 H 1.08003 * 120.00579 * 179.70248 * 27 6 5 46 46 H 1.07998 * 119.99795 * 180.29713 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2789 0.0005 5 6 4.1503 2.4703 0.0000 6 6 3.4517 3.6807 -0.0005 7 6 4.1901 4.9597 -0.0017 8 8 5.4058 4.9597 -0.0026 9 7 3.5162 6.1268 -0.0017 10 6 4.2486 7.3956 -0.0034 11 1 5.1587 7.2890 -0.5938 12 6 3.3708 8.4905 -0.6127 13 6 4.1355 9.8156 -0.6139 14 6 4.5005 10.1952 0.8227 15 1 3.5903 10.3015 1.4128 16 7 5.2332 11.4637 0.8215 17 6 5.2252 12.2600 1.9355 18 1 4.6790 11.9527 2.8151 19 6 5.9191 13.4622 1.9343 20 7 6.5843 13.8371 0.8621 21 14 5.9019 14.5522 3.4512 22 1 6.7074 15.7727 3.1930 23 1 4.5034 14.9396 3.7665 24 1 6.4811 13.8107 4.6000 25 6 5.3783 9.1002 1.4321 26 6 4.6141 7.7753 1.4330 27 6 2.0543 3.6805 0.0054 28 6 1.3664 2.4887 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8669 -0.9353 -0.0004 32 1 4.0021 0.3434 0.0014 33 1 5.2304 2.4703 0.0000 34 1 2.5462 6.1268 -0.0005 35 1 2.4607 8.5971 -0.0223 36 1 3.1104 8.2199 -1.6360 37 1 3.5100 10.5958 -1.0476 38 1 5.0457 9.7094 -1.2040 39 1 5.7240 11.7397 0.0317 40 1 6.5930 13.2712 0.0743 41 1 6.2887 8.9939 0.8419 42 1 5.6380 9.3703 2.4556 43 1 3.7041 7.8820 2.0233 44 1 5.2396 6.9953 1.8670 45 1 1.5141 4.6158 0.0098 46 1 0.2864 2.4886 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034741174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:00 Heat of formation + Delta-G solvation = -16.866799 kcal Electronic energy + Delta-G solvation = -24932.460901 eV Core-core repulsion = 21399.839922 eV Total energy + Delta-G solvation = -3532.620979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47164 -40.05012 -39.09068 -36.64826 -35.25344 -34.79377 -32.60511 -31.85910 -31.79478 -30.60188 -28.65731 -25.78216 -25.01193 -23.76450 -23.64702 -22.76018 -21.69023 -21.08052 -20.53324 -19.43328 -18.94369 -17.60592 -17.23213 -16.74979 -16.14018 -16.06527 -15.93503 -15.82635 -15.40038 -15.25660 -15.10304 -14.93208 -14.37300 -14.17081 -14.05034 -13.84464 -13.53152 -13.21737 -13.17756 -13.04030 -12.72211 -12.39964 -12.27814 -12.24836 -12.11515 -11.87188 -11.81936 -11.55210 -11.50745 -11.33666 -11.16466 -11.01983 -10.84661 -10.15496 -10.03617 -9.21639 -9.11073 -8.38254 -5.31593 -0.46303 0.38701 1.27247 1.57338 1.67663 1.83825 2.03333 2.06133 2.71733 2.94385 3.40054 3.54831 3.66994 3.70012 3.76547 3.79639 3.88541 3.93972 4.18082 4.27211 4.27581 4.32244 4.33460 4.42063 4.46494 4.49958 4.55258 4.73380 4.77033 4.87917 4.92879 5.01080 5.02554 5.05150 5.14832 5.17571 5.23067 5.30796 5.35270 5.40566 5.44727 5.52713 5.61835 5.65649 5.80502 5.90104 6.49449 6.50422 7.11294 7.15922 8.01851 8.13422 9.13771 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.002070 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.715525 B =13524.700782 C =13620.413180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C -0.035 4.035 4 C -0.125 4.125 5 C -0.075 4.075 6 C -0.157 4.157 7 C 0.553 3.447 8 O -0.585 6.585 9 N -0.704 5.704 10 C 0.153 3.847 11 H 0.064 0.936 12 C -0.105 4.105 13 C -0.114 4.114 14 C 0.177 3.823 15 H 0.047 0.953 16 N -0.751 5.751 17 C -0.326 4.326 18 H 0.066 0.934 19 C -0.109 4.109 20 N -0.977 5.977 21 Si 1.127 2.873 22 H -0.294 1.294 23 H -0.275 1.275 24 H -0.281 1.281 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.076 4.076 28 C -0.128 4.128 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.122 0.878 34 H 0.415 0.585 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.358 0.642 40 H 0.243 0.757 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.154 0.846 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.593 -29.765 -3.464 34.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C -0.035 4.035 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.160 4.160 7 C 0.342 3.658 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.048 3.952 11 H 0.082 0.918 12 C -0.143 4.143 13 C -0.153 4.153 14 C 0.069 3.931 15 H 0.065 0.935 16 N -0.392 5.392 17 C -0.458 4.458 18 H 0.084 0.916 19 C -0.300 4.300 20 N -0.626 5.626 21 Si 0.952 3.048 22 H -0.220 1.220 23 H -0.201 1.201 24 H -0.207 1.207 25 C -0.163 4.163 26 C -0.151 4.151 27 C -0.095 4.095 28 C -0.146 4.146 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.190 0.810 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.171 0.829 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.353 -28.370 -2.624 32.850 hybrid contribution 0.133 -1.073 -0.864 1.384 sum -16.219 -29.443 -3.489 33.795 Atomic orbital electron populations 1.24767 0.95296 1.03804 0.95257 1.21943 0.95876 0.95359 1.03253 1.19665 0.93309 0.94520 0.96016 1.21440 0.93824 0.98131 1.00850 1.21266 1.00549 0.91702 0.95849 1.19965 0.94820 0.92418 1.08837 1.18716 0.86891 0.84894 0.75294 1.90769 1.15650 1.88240 1.51983 1.45829 1.10987 1.04523 1.74206 1.20860 0.95620 0.82683 0.96027 0.91777 1.21651 0.98356 0.91796 1.02497 1.21650 1.00245 0.97418 0.95939 1.20433 0.93087 0.84040 0.95527 0.93498 1.42690 1.61033 1.21040 1.14480 1.20375 1.28801 1.02519 0.94101 0.91617 1.27194 0.97630 0.99042 1.06100 1.70992 1.46655 1.40482 1.04442 0.82637 0.76647 0.74286 0.71253 1.21982 1.20086 1.20713 1.21999 0.98881 0.95262 1.00115 1.21748 1.00473 0.95815 0.97049 1.21484 0.91735 1.00097 0.96147 1.21568 1.01526 0.90897 1.00575 0.85885 0.87025 0.85110 0.83434 0.85993 0.74598 0.89149 0.89052 0.91293 0.92892 0.81038 0.94654 0.94420 0.94277 0.90431 0.93509 0.82860 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 14.15 66.65 0.94 0.10 16 2 C -0.15 -1.26 9.90 23.59 0.23 -1.03 16 3 C -0.03 -0.44 5.87 -20.07 -0.12 -0.56 16 4 C -0.12 -1.88 9.76 22.47 0.22 -1.66 16 5 C -0.07 -1.52 9.57 22.48 0.22 -1.30 16 6 C -0.16 -3.22 5.88 -20.05 -0.12 -3.34 16 7 C 0.55 14.47 7.73 86.74 0.67 15.14 16 8 O -0.59 -20.87 15.99 -3.94 -0.06 -20.93 16 9 N -0.70 -14.66 5.03 -445.57 -2.24 -16.90 16 10 C 0.15 3.97 2.45 44.99 0.11 4.08 16 11 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.10 -2.32 5.39 30.59 0.16 -2.15 16 13 C -0.11 -3.55 5.39 30.59 0.16 -3.38 16 14 C 0.18 7.03 2.77 44.99 0.12 7.16 16 15 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 16 N -0.75 -38.66 5.12 -322.95 -1.65 -40.32 16 17 C -0.33 -18.69 9.93 84.03 0.83 -17.85 16 18 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 19 C -0.11 -6.46 5.50 84.86 0.47 -5.99 16 20 N -0.98 -62.60 13.70 21.65 0.30 -62.31 16 21 Si 1.13 53.02 29.92 68.60 2.05 55.07 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 C -0.12 -4.66 5.50 30.58 0.17 -4.49 16 26 C -0.11 -3.36 5.49 30.58 0.17 -3.20 16 27 C -0.08 -1.02 9.52 22.49 0.21 -0.81 16 28 C -0.13 -1.44 9.38 22.48 0.21 -1.23 16 29 H 0.12 0.28 8.06 -2.91 -0.02 0.26 16 30 H 0.11 0.40 6.02 -2.91 -0.02 0.38 16 31 H 0.13 0.81 8.06 -2.91 -0.02 0.78 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.12 2.75 7.64 -2.91 -0.02 2.73 16 34 H 0.42 5.40 6.62 -92.71 -0.61 4.79 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.36 19.34 6.63 -92.71 -0.61 18.73 16 40 H 0.24 15.54 6.77 -92.70 -0.63 14.91 16 41 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.15 1.12 6.38 -2.91 -0.02 1.10 16 46 H 0.16 0.86 6.15 -2.91 -0.02 0.84 16 Total: -1.00 -77.75 374.28 2.97 -74.78 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.10 Total: 31.11 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.67 Total: -20.51 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -3.60 Total: -119.52 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 2.05 Total: 55.07 kcal Total: -77.75 2.97 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034741174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.911 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds