Wall clock time and date at job start Tue Mar 31 2020 10:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37974 * 120.07537 * 2 1 4 4 C 1.38335 * 120.14508 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29051 * 0.02701 * 4 3 2 6 6 C 1.37937 * 120.14681 * 359.73723 * 5 4 3 7 7 C 1.39559 * 120.06846 * 179.97438 * 2 1 3 8 8 C 1.47840 * 120.14568 * 359.97438 * 7 2 1 9 9 O 1.21555 * 120.00151 * 305.14244 * 8 7 2 10 10 N 1.34780 * 119.99697 * 125.13994 * 8 7 2 11 11 C 1.46895 * 120.46093 * 184.16480 * 10 8 7 12 12 C 1.53364 * 108.74300 * 124.34537 * 11 10 8 13 13 C 1.52550 * 109.12232 * 52.25723 * 12 11 10 14 14 C 1.52967 * 114.06178 * 75.54508 * 13 12 11 15 15 N 1.47164 * 87.85484 * 139.43646 * 14 13 12 16 16 C 1.36940 * 136.00218 * 153.07766 * 15 14 13 17 17 H 1.07996 * 119.99383 * 354.95248 * 16 15 14 18 18 C 1.38805 * 119.99767 * 174.95192 * 16 15 14 19 19 N 1.31621 * 120.00698 * 4.99819 * 18 16 15 20 20 Si 1.86805 * 119.99780 * 185.00492 * 18 16 15 21 21 H 1.48502 * 109.47464 * 94.99378 * 20 18 16 22 22 H 1.48502 * 109.47046 * 214.99867 * 20 18 16 23 23 H 1.48503 * 109.46917 * 334.99410 * 20 18 16 24 24 C 1.47169 * 87.99621 * 333.33801 * 15 14 13 25 25 C 1.52555 * 113.43507 * 302.66889 * 13 12 11 26 26 C 1.46883 * 120.46602 * 4.14041 * 10 8 7 27 27 H 1.09007 * 109.46933 * 264.97960 * 1 2 3 28 28 H 1.09008 * 109.46937 * 24.96990 * 1 2 3 29 29 H 1.08997 * 109.47519 * 144.97386 * 1 2 3 30 30 H 1.08003 * 119.92558 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.85718 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.92673 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.07556 * 180.27473 * 6 5 4 34 34 H 1.09007 * 109.59530 * 4.56933 * 11 10 8 35 35 H 1.08999 * 109.59228 * 244.12367 * 11 10 8 36 36 H 1.08999 * 109.52459 * 292.36958 * 12 11 10 37 37 H 1.08996 * 109.58610 * 172.19026 * 12 11 10 38 38 H 1.08994 * 113.48948 * 24.69380 * 14 13 12 39 39 H 1.08996 * 113.48734 * 254.18158 * 14 13 12 40 40 H 0.96998 * 120.00133 * 180.02562 * 19 18 16 41 41 H 1.09006 * 113.48875 * 141.41645 * 24 15 14 42 42 H 1.09004 * 113.49065 * 271.91662 * 24 15 14 43 43 H 1.09005 * 109.52285 * 177.21791 * 25 13 12 44 44 H 1.08998 * 109.52575 * 297.42404 * 25 13 12 45 45 H 1.09000 * 109.58874 * 355.43412 * 26 10 8 46 46 H 1.09006 * 109.58675 * 115.86374 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0016 0.0005 6 6 3.6022 -1.1990 0.0054 7 6 2.2063 -1.2078 0.0005 8 6 1.4719 -2.4909 0.0017 9 8 0.6444 -2.7168 0.8630 10 7 1.7199 -3.4101 -0.9523 11 6 0.9331 -4.6490 -1.0152 12 6 0.3123 -4.7681 -2.4125 13 6 1.4087 -4.6109 -3.4615 14 6 2.3041 -5.8414 -3.6171 15 7 2.2689 -5.6147 -5.0707 16 6 3.0906 -5.8905 -6.1309 17 1 4.0633 -6.3278 -5.9606 18 6 2.6733 -5.6081 -7.4242 19 7 1.5311 -4.9859 -7.6263 20 14 3.7326 -6.1113 -8.8783 21 1 3.2718 -7.4249 -9.3954 22 1 3.6192 -5.0898 -9.9503 23 1 5.1489 -6.2190 -8.4451 24 6 0.9663 -4.9556 -4.8843 25 6 2.1730 -3.2955 -3.3479 26 6 2.7802 -3.1868 -1.9439 27 1 -0.3633 -0.0899 1.0238 28 1 -0.3633 0.9317 -0.4339 29 1 -0.3634 -0.8415 -0.5898 30 1 1.6585 2.1293 -0.0004 31 1 4.1184 2.1330 0.0001 32 1 5.3613 0.0098 0.0005 33 1 4.1492 -2.1302 0.0099 34 1 0.1424 -4.6184 -0.2654 35 1 1.5828 -5.5043 -0.8297 36 1 -0.4353 -3.9863 -2.5469 37 1 -0.1585 -5.7451 -2.5211 38 1 1.8231 -6.7702 -3.3105 39 1 3.2953 -5.7152 -3.1816 40 1 1.2394 -4.7889 -8.5301 41 1 0.8270 -4.0811 -5.5199 42 1 0.1218 -5.6438 -4.9220 43 1 2.9691 -3.2713 -4.0921 44 1 1.4908 -2.4621 -3.5154 45 1 3.2063 -2.1931 -1.8059 46 1 3.5584 -3.9405 -1.8228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035638520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:11 Heat of formation + Delta-G solvation = 31.559069 kcal Electronic energy + Delta-G solvation = -26739.428033 eV Core-core repulsion = 23208.906958 eV Total energy + Delta-G solvation = -3530.521076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90171 -40.69379 -39.23659 -37.15436 -34.49017 -33.68546 -33.09147 -31.88112 -31.47005 -28.81501 -27.93962 -26.61356 -25.61133 -24.48677 -24.13119 -22.88997 -22.36365 -20.76931 -19.19179 -18.67418 -18.04792 -17.41855 -16.90610 -16.71900 -16.61071 -16.12323 -15.71970 -15.64254 -15.43933 -15.09727 -14.64721 -14.57230 -14.28816 -14.18362 -14.01229 -13.73119 -13.64327 -13.21701 -13.11320 -12.94563 -12.91356 -12.81328 -12.60161 -12.46798 -12.17140 -12.12986 -11.99564 -11.71328 -11.63633 -11.16640 -10.90011 -10.87215 -10.83227 -9.83726 -9.67628 -9.57625 -8.87788 -7.89833 -5.21621 0.07716 0.41683 1.45669 1.47477 1.56158 1.59985 2.00238 2.48263 2.79431 3.31687 3.41714 3.47564 3.59847 3.83817 3.88962 3.92574 4.08871 4.13228 4.18355 4.30859 4.36500 4.40098 4.53097 4.57136 4.66276 4.69499 4.73733 4.74880 4.77037 4.83924 4.86568 4.90679 5.00685 5.05555 5.13208 5.19660 5.22088 5.28250 5.32609 5.40248 5.48790 5.54209 5.56351 5.57998 5.72917 5.94594 6.00329 6.34950 6.92347 7.06438 7.62330 8.64882 9.28348 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.003479 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.007754 B = 8045.553942 C = 8730.257127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.128 4.128 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.094 4.094 7 C -0.150 4.150 8 C 0.561 3.439 9 O -0.574 6.574 10 N -0.597 5.597 11 C 0.119 3.881 12 C -0.105 4.105 13 C -0.088 4.088 14 C 0.130 3.870 15 N -0.636 5.636 16 C -0.225 4.225 17 H 0.086 0.914 18 C -0.066 4.066 19 N -0.953 5.953 20 Si 0.974 3.026 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.164 3.836 25 C -0.088 4.088 26 C 0.113 3.887 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.247 0.753 41 H 0.030 0.970 42 H 0.011 0.989 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 11.642 17.488 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.114 4.114 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.153 4.153 8 C 0.351 3.649 9 O -0.455 6.455 10 N -0.328 5.328 11 C -0.003 4.003 12 C -0.144 4.144 13 C -0.089 4.089 14 C 0.005 3.995 15 N -0.362 5.362 16 C -0.353 4.353 17 H 0.104 0.896 18 C -0.259 4.259 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.189 1.189 24 C 0.038 3.962 25 C -0.126 4.126 26 C -0.009 4.009 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.029 0.971 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.459 11.463 17.589 21.278 hybrid contribution -0.049 -0.730 -1.457 1.631 sum 3.410 10.734 16.131 19.674 Atomic orbital electron populations 1.20792 0.90762 1.02774 1.02540 1.20102 0.96594 0.92249 0.96998 1.21305 0.95066 0.97321 1.00918 1.21714 0.93983 0.99505 0.96154 1.21444 1.01578 0.91572 1.00152 1.21450 0.91834 1.00158 0.97840 1.19803 0.94951 0.92452 1.08084 1.18694 0.81667 0.83805 0.80722 1.90726 1.36648 1.79716 1.38414 1.48120 1.35816 1.19462 1.29432 1.21628 0.95862 0.85729 0.97075 1.21660 0.96841 1.02721 0.93184 1.21872 0.96594 0.95665 0.94771 1.22540 0.97716 0.95171 0.84031 1.45868 1.19677 1.67605 1.03054 1.19330 0.96712 1.34410 0.84833 0.89632 1.25602 0.98740 1.01863 0.99712 1.70040 1.23711 1.46465 1.19979 0.85114 0.78613 0.76912 0.79073 1.21821 1.22253 1.18851 1.21969 0.87767 0.94503 0.91989 1.21308 0.99428 0.95246 0.96628 1.22027 0.89085 1.03730 0.86103 0.90914 0.89335 0.93618 0.83298 0.82674 0.82813 0.84480 0.89464 0.89810 0.92134 0.89784 0.94035 0.92953 0.94442 0.95122 0.97107 0.91801 0.92627 0.87832 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.02 71.24 0.64 -1.82 16 2 C -0.06 -1.31 5.91 -19.61 -0.12 -1.43 16 3 C -0.13 -2.14 9.67 22.23 0.21 -1.93 16 4 C -0.10 -1.33 10.04 22.33 0.22 -1.11 16 5 C -0.13 -1.94 10.03 22.23 0.22 -1.71 16 6 C -0.09 -1.82 7.42 22.53 0.17 -1.66 16 7 C -0.15 -3.67 4.87 -20.09 -0.10 -3.77 16 8 C 0.56 16.19 6.13 86.78 0.53 16.73 16 9 O -0.57 -19.90 15.61 -3.89 -0.06 -19.96 16 10 N -0.60 -15.92 2.94 -821.85 -2.42 -18.34 16 11 C 0.12 3.10 6.34 86.43 0.55 3.65 16 12 C -0.11 -3.05 5.30 30.57 0.16 -2.88 16 13 C -0.09 -3.08 0.84 -52.51 -0.04 -3.12 16 14 C 0.13 4.98 7.63 83.32 0.64 5.62 16 15 N -0.64 -32.03 3.55 -738.13 -2.62 -34.65 16 16 C -0.22 -12.45 10.74 84.03 0.90 -11.55 16 17 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.95 -57.89 11.60 21.65 0.25 -57.64 16 20 Si 0.97 45.49 29.56 68.60 2.03 47.52 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.16 7.74 6.49 83.31 0.54 8.28 16 25 C -0.09 -2.85 5.27 30.56 0.16 -2.69 16 26 C 0.11 2.82 5.51 86.42 0.48 3.29 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.09 1.47 8.05 -2.38 -0.02 1.45 16 29 H 0.04 1.19 7.17 -2.39 -0.02 1.17 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.14 2.31 7.43 -2.91 -0.02 2.29 16 34 H 0.09 2.35 6.99 -2.38 -0.02 2.34 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 38 H 0.04 1.53 8.06 -2.39 -0.02 1.51 16 39 H 0.05 1.84 7.53 -2.39 -0.02 1.82 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.03 1.65 7.24 -2.38 -0.02 1.63 16 42 H 0.01 0.55 8.09 -2.38 -0.02 0.53 16 43 H 0.06 2.41 7.95 -2.38 -0.02 2.39 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 2.32 4.65 -2.39 -0.01 2.31 16 46 H 0.08 1.94 7.60 -2.38 -0.02 1.92 16 Total: -1.00 -71.59 363.04 3.78 -67.80 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.96 Total: 14.63 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.64 Total: 0.63 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.78 Total: -110.62 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.59 3.78 -67.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035638520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.362 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds