Wall clock time and date at job start Tue Mar 31 2020 10:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38356 * 119.85470 * 2 1 4 4 C 1.37965 * 120.14839 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.84672 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14299 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99883 * 326.75459 * 6 5 4 8 8 N 1.34770 * 120.00279 * 146.75325 * 6 5 4 9 9 C 1.46600 * 119.68405 * 354.65243 * 8 6 5 10 10 C 1.53957 * 110.57989 * 227.82600 * 9 8 6 11 11 C 1.51517 * 107.34189 * 308.94314 * 10 9 8 12 12 H 1.08997 * 109.28371 * 306.30363 * 11 10 9 13 13 C 1.55370 * 107.78958 * 64.86384 * 11 10 9 14 14 H 1.08992 * 111.51014 * 49.83282 * 13 11 10 15 15 C 1.53741 * 100.21821 * 168.51158 * 13 11 10 16 16 C 1.55284 * 101.84442 * 320.90528 * 15 13 11 17 17 N 1.45470 * 117.34750 * 181.23618 * 11 10 9 18 18 C 1.36937 * 126.40378 * 31.27725 * 17 11 10 19 19 H 1.08000 * 119.99740 * 4.05470 * 18 17 11 20 20 C 1.38807 * 120.00064 * 184.05845 * 18 17 11 21 21 N 1.31622 * 119.99726 * 8.24417 * 20 18 17 22 22 Si 1.86795 * 120.00012 * 188.24250 * 20 18 17 23 23 H 1.48500 * 109.47093 * 84.98650 * 22 20 18 24 24 H 1.48506 * 109.47119 * 204.98152 * 22 20 18 25 25 H 1.48493 * 109.47236 * 324.98220 * 22 20 18 26 26 C 1.47724 * 119.68704 * 174.63717 * 8 6 5 27 27 C 1.39574 * 119.71548 * 0.25184 * 5 4 3 28 28 C 1.37963 * 119.84925 * 359.47555 * 27 5 4 29 29 H 1.08995 * 109.47090 * 89.99654 * 1 2 3 30 30 H 1.08999 * 109.46851 * 209.99896 * 1 2 3 31 31 H 1.09004 * 109.46635 * 329.99955 * 1 2 3 32 32 H 1.08000 * 119.93329 * 359.97438 * 3 2 1 33 33 H 1.07992 * 120.07540 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.25464 * 107.54006 * 9 8 6 35 35 H 1.09000 * 109.25275 * 348.10583 * 9 8 6 36 36 H 1.09001 * 109.88262 * 189.48822 * 10 9 8 37 37 H 1.08994 * 109.94475 * 68.43944 * 10 9 8 38 38 H 1.09002 * 110.95776 * 79.04532 * 15 13 11 39 39 H 1.09003 * 110.95367 * 202.76687 * 15 13 11 40 40 H 1.09006 * 109.92188 * 141.82885 * 16 15 13 41 41 H 1.08998 * 109.92350 * 263.13331 * 16 15 13 42 42 H 0.97007 * 119.99728 * 179.97438 * 21 20 18 43 43 H 1.09007 * 110.06450 * 247.15666 * 26 8 6 44 44 H 1.08998 * 110.06616 * 8.61440 * 26 8 6 45 45 H 1.08002 * 120.07708 * 179.72513 * 27 5 4 46 46 H 1.08002 * 119.92736 * 180.27444 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5754 1.2070 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 0.8803 -0.5766 8 7 6.4285 -0.9762 0.6404 9 6 5.6934 -1.9672 1.4320 10 6 6.3418 -2.1422 2.8173 11 6 7.8198 -2.3914 2.5960 12 1 7.9448 -3.2252 1.9052 13 6 8.4280 -1.1089 1.9640 14 1 8.1490 -0.2165 2.5240 15 6 9.9269 -1.4251 2.0943 16 6 9.9891 -2.1051 3.4889 17 7 8.6434 -2.6162 3.7739 18 6 8.2444 -3.2048 4.9441 19 1 7.2482 -3.6126 5.0312 20 6 9.1204 -3.2772 6.0185 21 7 10.2719 -2.6413 5.9727 22 14 8.6650 -4.2772 7.5291 23 1 9.0372 -5.6984 7.3126 24 1 9.3937 -3.7491 8.7104 25 1 7.2023 -4.1789 7.7653 26 6 7.9009 -1.0376 0.5372 27 6 3.5753 -1.2070 -0.0053 28 6 2.1957 -1.2000 -0.0001 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6523 2.1333 -0.0004 33 1 4.1118 2.1443 0.0010 34 1 5.7010 -2.9230 0.9082 35 1 4.6629 -1.6346 1.5569 36 1 5.8951 -2.9937 3.3308 37 1 6.2029 -1.2379 3.4097 38 1 10.2501 -2.1111 1.3113 39 1 10.5208 -0.5112 2.0793 40 1 10.7043 -2.9275 3.4695 41 1 10.2784 -1.3756 4.2453 42 1 10.8839 -2.6916 6.7236 43 1 8.2001 -1.9270 -0.0174 44 1 8.2786 -0.1435 0.0412 45 1 4.1117 -2.1444 -0.0099 46 1 1.6521 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036877460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:20 Heat of formation + Delta-G solvation = 27.779475 kcal Electronic energy + Delta-G solvation = -26486.786028 eV Core-core repulsion = 22956.101057 eV Total energy + Delta-G solvation = -3530.684971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71636 -39.12237 -37.99925 -35.52419 -33.35553 -32.49226 -31.56982 -31.23024 -29.71830 -28.33468 -27.28663 -25.00785 -23.78209 -23.13368 -22.18914 -21.83662 -20.18477 -19.89944 -19.23201 -17.37772 -16.37918 -16.27913 -15.76619 -15.52629 -14.97312 -14.72778 -14.63425 -14.27349 -14.07541 -13.89329 -13.69670 -13.54737 -13.14198 -12.96507 -12.66160 -12.51770 -12.44721 -12.08894 -11.80531 -11.57517 -11.51161 -11.45416 -11.13767 -10.81926 -10.79400 -10.70376 -10.18186 -10.07536 -9.86267 -9.72959 -9.66514 -9.47944 -9.12150 -8.84479 -8.64000 -8.49356 -6.84123 -5.69576 -3.07334 0.75705 1.16764 2.76376 3.04075 3.38791 3.43589 3.45641 3.63790 4.40167 4.48678 4.55687 4.63221 4.74539 5.01325 5.02353 5.06398 5.19446 5.25111 5.27564 5.33896 5.43098 5.46342 5.51762 5.56009 5.64074 5.74764 5.79874 5.83192 5.88047 6.03277 6.07666 6.15303 6.17165 6.19622 6.24282 6.31055 6.37120 6.50603 6.62964 6.65390 6.69529 6.84233 7.06931 7.47050 7.50041 7.66320 7.83780 8.21030 8.28304 9.20051 9.83396 10.49412 11.38323 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003461 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.354728 B = 8088.306400 C = 9276.604183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.133 4.133 6 C 0.556 3.444 7 O -0.544 6.544 8 N -0.600 5.600 9 C 0.098 3.902 10 C -0.129 4.129 11 C 0.167 3.833 12 H 0.021 0.979 13 C -0.124 4.124 14 H 0.079 0.921 15 C -0.134 4.134 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.126 3.874 27 C -0.087 4.087 28 C -0.130 4.130 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.137 0.863 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 3.731 -13.054 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.079 4.079 5 C -0.136 4.136 6 C 0.344 3.656 7 O -0.423 6.423 8 N -0.332 5.332 9 C -0.025 4.025 10 C -0.168 4.168 11 C 0.059 3.941 12 H 0.038 0.962 13 C -0.144 4.144 14 H 0.098 0.902 15 C -0.173 4.173 16 C 0.046 3.954 17 N -0.316 5.316 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.004 3.996 27 C -0.106 4.106 28 C -0.148 4.148 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.155 0.845 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.603 4.120 -13.112 20.793 hybrid contribution -0.120 -0.648 0.956 1.162 sum -15.722 3.471 -12.156 20.174 Atomic orbital electron populations 1.20852 0.90975 1.03088 1.02509 1.20127 0.96287 0.93199 0.97117 1.21001 0.93783 0.97815 1.02180 1.21211 0.93901 0.97441 0.95351 1.19943 0.93144 0.94538 1.05978 1.18403 0.87045 0.81246 0.78873 1.90747 1.69748 1.36298 1.45510 1.48196 1.07746 1.28808 1.48417 1.22334 0.96326 0.91365 0.92451 1.21906 0.97545 1.02705 0.94694 1.20670 0.90083 0.93328 0.90023 0.96194 1.22641 0.96944 1.00163 0.94679 0.90238 1.22686 0.94136 1.00122 1.00328 1.21424 0.86467 0.96808 0.90709 1.43915 1.06598 1.69790 1.11342 1.18986 0.98443 1.29605 0.88629 0.90467 1.24800 0.96949 1.00585 0.98096 1.69947 1.10170 1.45150 1.31301 0.86172 0.77496 0.79848 0.82454 1.21599 1.21755 1.20748 1.21655 0.77610 1.02683 0.97647 1.21635 0.94487 0.97678 0.96770 1.21002 0.93807 0.97840 1.02174 0.90909 0.91250 0.91325 0.85496 0.85054 0.91561 0.88957 0.90499 0.91316 0.92463 0.92039 0.95621 0.91167 0.93751 0.91261 0.89130 0.84512 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.07 -0.59 5.89 -104.53 -0.62 -1.21 16 3 C -0.13 -1.24 9.68 -39.64 -0.38 -1.63 16 4 C -0.06 -0.71 9.61 -39.18 -0.38 -1.09 16 5 C -0.13 -1.73 5.28 -104.97 -0.55 -2.28 16 6 C 0.56 8.72 7.39 -12.33 -0.09 8.62 16 7 O -0.54 -10.15 16.14 5.32 0.09 -10.06 16 8 N -0.60 -9.00 3.00 -173.57 -0.52 -9.52 16 9 C 0.10 1.31 4.62 -3.49 -0.02 1.29 16 10 C -0.13 -2.20 5.50 -26.98 -0.15 -2.34 16 11 C 0.17 3.32 2.59 -67.98 -0.18 3.14 16 12 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 13 C -0.12 -2.25 2.84 -89.35 -0.25 -2.50 16 14 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 15 C -0.13 -2.51 6.55 -25.14 -0.16 -2.68 16 16 C 0.17 4.12 5.50 -2.70 -0.01 4.10 16 17 N -0.59 -14.71 3.30 -164.22 -0.54 -15.25 16 18 C -0.23 -6.17 9.84 -15.06 -0.15 -6.32 16 19 H 0.08 2.00 7.31 -52.49 -0.38 1.61 16 20 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 21 N -0.92 -26.77 10.44 55.49 0.58 -26.19 16 22 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.13 1.97 6.01 -3.74 -0.02 1.95 16 27 C -0.09 -0.93 7.36 -39.18 -0.29 -1.22 16 28 C -0.13 -1.18 9.68 -39.64 -0.38 -1.56 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.55 7.97 -52.49 -0.42 1.13 16 34 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 35 H 0.09 1.10 4.55 -51.93 -0.24 0.86 16 36 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 37 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 38 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.07 1.91 6.70 -51.93 -0.35 1.56 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 44 H 0.09 1.47 6.98 -51.93 -0.36 1.10 16 45 H 0.14 1.30 5.65 -52.49 -0.30 1.00 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -31.93 357.43 -10.43 -42.36 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.03 Total: 0.84 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.37 Total: -4.38 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.48 Total: -50.96 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.93 -10.43 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036877460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.143 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds