Wall clock time and date at job start Tue Mar 31 2020 10:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38356 * 119.85470 * 2 1 4 4 C 1.37965 * 120.14839 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.84672 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14299 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99883 * 326.75459 * 6 5 4 8 8 N 1.34770 * 120.00279 * 146.75325 * 6 5 4 9 9 C 1.46600 * 119.68405 * 354.65243 * 8 6 5 10 10 C 1.53957 * 110.57989 * 227.82600 * 9 8 6 11 11 C 1.51517 * 107.34189 * 308.94314 * 10 9 8 12 12 H 1.08997 * 109.28371 * 306.30363 * 11 10 9 13 13 C 1.55370 * 107.78958 * 64.86384 * 11 10 9 14 14 H 1.08992 * 111.51014 * 49.83282 * 13 11 10 15 15 C 1.53741 * 100.21821 * 168.51158 * 13 11 10 16 16 C 1.55284 * 101.84442 * 320.90528 * 15 13 11 17 17 N 1.45470 * 117.34750 * 181.23618 * 11 10 9 18 18 C 1.36937 * 126.40378 * 31.27725 * 17 11 10 19 19 H 1.08000 * 119.99740 * 4.05470 * 18 17 11 20 20 C 1.38807 * 120.00064 * 184.05845 * 18 17 11 21 21 N 1.31622 * 119.99726 * 8.24417 * 20 18 17 22 22 Si 1.86795 * 120.00012 * 188.24250 * 20 18 17 23 23 H 1.48500 * 109.47093 * 84.98650 * 22 20 18 24 24 H 1.48506 * 109.47119 * 204.98152 * 22 20 18 25 25 H 1.48493 * 109.47236 * 324.98220 * 22 20 18 26 26 C 1.47724 * 119.68704 * 174.63717 * 8 6 5 27 27 C 1.39574 * 119.71548 * 0.25184 * 5 4 3 28 28 C 1.37963 * 119.84925 * 359.47555 * 27 5 4 29 29 H 1.08995 * 109.47090 * 89.99654 * 1 2 3 30 30 H 1.08999 * 109.46851 * 209.99896 * 1 2 3 31 31 H 1.09004 * 109.46635 * 329.99955 * 1 2 3 32 32 H 1.08000 * 119.93329 * 359.97438 * 3 2 1 33 33 H 1.07992 * 120.07540 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.25464 * 107.54006 * 9 8 6 35 35 H 1.09000 * 109.25275 * 348.10583 * 9 8 6 36 36 H 1.09001 * 109.88262 * 189.48822 * 10 9 8 37 37 H 1.08994 * 109.94475 * 68.43944 * 10 9 8 38 38 H 1.09002 * 110.95776 * 79.04532 * 15 13 11 39 39 H 1.09003 * 110.95367 * 202.76687 * 15 13 11 40 40 H 1.09006 * 109.92188 * 141.82885 * 16 15 13 41 41 H 1.08998 * 109.92350 * 263.13331 * 16 15 13 42 42 H 0.97007 * 119.99728 * 179.97438 * 21 20 18 43 43 H 1.09007 * 110.06450 * 247.15666 * 26 8 6 44 44 H 1.08998 * 110.06616 * 8.61440 * 26 8 6 45 45 H 1.08002 * 120.07708 * 179.72513 * 27 5 4 46 46 H 1.08002 * 119.92736 * 180.27444 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5754 1.2070 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 0.8803 -0.5766 8 7 6.4285 -0.9762 0.6404 9 6 5.6934 -1.9672 1.4320 10 6 6.3418 -2.1422 2.8173 11 6 7.8198 -2.3914 2.5960 12 1 7.9448 -3.2252 1.9052 13 6 8.4280 -1.1089 1.9640 14 1 8.1490 -0.2165 2.5240 15 6 9.9269 -1.4251 2.0943 16 6 9.9891 -2.1051 3.4889 17 7 8.6434 -2.6162 3.7739 18 6 8.2444 -3.2048 4.9441 19 1 7.2482 -3.6126 5.0312 20 6 9.1204 -3.2772 6.0185 21 7 10.2719 -2.6413 5.9727 22 14 8.6650 -4.2772 7.5291 23 1 9.0372 -5.6984 7.3126 24 1 9.3937 -3.7491 8.7104 25 1 7.2023 -4.1789 7.7653 26 6 7.9009 -1.0376 0.5372 27 6 3.5753 -1.2070 -0.0053 28 6 2.1957 -1.2000 -0.0001 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6523 2.1333 -0.0004 33 1 4.1118 2.1443 0.0010 34 1 5.7010 -2.9230 0.9082 35 1 4.6629 -1.6346 1.5569 36 1 5.8951 -2.9937 3.3308 37 1 6.2029 -1.2379 3.4097 38 1 10.2501 -2.1111 1.3113 39 1 10.5208 -0.5112 2.0793 40 1 10.7043 -2.9275 3.4695 41 1 10.2784 -1.3756 4.2453 42 1 10.8839 -2.6916 6.7236 43 1 8.2001 -1.9270 -0.0174 44 1 8.2786 -0.1435 0.0412 45 1 4.1117 -2.1444 -0.0099 46 1 1.6521 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036877460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:19 Heat of formation + Delta-G solvation = 10.023424 kcal Electronic energy + Delta-G solvation = -26487.555988 eV Core-core repulsion = 22956.101057 eV Total energy + Delta-G solvation = -3531.454931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86424 -40.29064 -39.23362 -36.97369 -34.73480 -33.74440 -33.04437 -32.06203 -31.33468 -29.78960 -28.18758 -26.71579 -25.22214 -24.21106 -23.31478 -22.78188 -21.87606 -21.29705 -20.51894 -18.79411 -17.98019 -17.40722 -17.01062 -16.64216 -16.46202 -15.95204 -15.79448 -15.62578 -15.53271 -14.87494 -14.70789 -14.60317 -14.40928 -14.17751 -14.09088 -13.87964 -13.26341 -13.23463 -13.14829 -12.98095 -12.80396 -12.66369 -12.58946 -12.39113 -12.12595 -12.01965 -11.89572 -11.76368 -11.61362 -11.51843 -11.06356 -10.89265 -10.71430 -9.91970 -9.78868 -9.56588 -8.87038 -7.79413 -5.19056 -0.08118 0.41296 1.46459 1.48773 1.56305 1.66779 1.92026 2.51197 2.79824 3.34607 3.35031 3.55243 3.76548 3.83702 3.91444 3.97852 4.02058 4.03185 4.19024 4.20760 4.36207 4.41148 4.46195 4.49065 4.63640 4.67246 4.76715 4.78452 4.80197 4.80984 4.88574 4.89883 5.02905 5.06633 5.10435 5.18458 5.26296 5.34362 5.38423 5.45642 5.51343 5.54309 5.62319 5.65201 5.80873 5.97585 6.24715 6.30618 7.02907 7.11129 7.82003 8.47780 9.27532 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003461 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.354728 B = 8088.306400 C = 9276.604183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.078 4.078 5 C -0.159 4.159 6 C 0.553 3.447 7 O -0.584 6.584 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.123 4.123 11 C 0.158 3.842 12 H 0.031 0.969 13 C -0.111 4.111 14 H 0.054 0.946 15 C -0.120 4.120 16 C 0.175 3.825 17 N -0.613 5.613 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.300 1.300 25 H -0.266 1.266 26 C 0.134 3.866 27 C -0.088 4.088 28 C -0.129 4.129 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.074 0.926 40 H -0.005 1.005 41 H 0.030 0.970 42 H 0.244 0.756 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.150 0.850 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 2.458 -14.414 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.162 4.162 6 C 0.344 3.656 7 O -0.465 6.465 8 N -0.332 5.332 9 C -0.015 4.015 10 C -0.162 4.162 11 C 0.051 3.949 12 H 0.049 0.951 13 C -0.131 4.131 14 H 0.073 0.927 15 C -0.158 4.158 16 C 0.049 3.951 17 N -0.337 5.337 18 C -0.361 4.361 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.227 1.227 25 H -0.191 1.191 26 C 0.012 3.988 27 C -0.107 4.107 28 C -0.147 4.147 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.013 0.987 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.168 0.832 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.071 2.833 -14.496 24.121 hybrid contribution 0.863 -0.221 1.350 1.618 sum -18.208 2.612 -13.145 22.609 Atomic orbital electron populations 1.20928 0.88676 1.04178 1.03567 1.20547 0.97975 0.92736 0.95082 1.21260 0.92844 0.99386 1.01518 1.21276 0.95094 0.96839 0.96468 1.19844 0.91430 0.96030 1.08898 1.18884 0.88299 0.80384 0.78029 1.90716 1.70826 1.37716 1.47286 1.48251 1.07436 1.29111 1.48432 1.22427 0.96523 0.92357 0.90195 1.21835 0.95769 1.01711 0.96912 1.20919 0.91503 0.94097 0.88364 0.95129 1.22462 0.96229 0.98292 0.96118 0.92718 1.22556 0.95105 1.00632 0.97530 1.21180 0.86028 0.95032 0.92811 1.44209 1.07672 1.69660 1.12146 1.19417 0.98685 1.28649 0.89376 0.89435 1.25653 0.97221 1.02210 1.01253 1.70190 1.11291 1.46936 1.31752 0.85137 0.77808 0.78087 0.78604 1.21324 1.22655 1.19067 1.21533 0.78287 1.03467 0.95562 1.21781 0.95328 0.97100 0.96459 1.21374 0.93243 0.99207 1.00857 0.89700 0.89997 0.90506 0.83475 0.86286 0.88646 0.86956 0.90108 0.93557 0.90050 0.90770 0.98658 0.95148 0.94640 0.89083 0.89675 0.83204 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.01 71.24 0.71 -0.21 16 2 C -0.06 -0.89 5.89 -19.81 -0.12 -1.01 16 3 C -0.13 -2.25 9.68 22.23 0.22 -2.03 16 4 C -0.08 -1.80 9.61 22.53 0.22 -1.58 16 5 C -0.16 -3.93 5.28 -20.09 -0.11 -4.04 16 6 C 0.55 17.04 7.39 86.79 0.64 17.68 16 7 O -0.58 -22.05 16.14 -3.88 -0.06 -22.12 16 8 N -0.60 -17.14 3.00 -821.35 -2.46 -19.61 16 9 C 0.11 2.58 4.62 86.68 0.40 2.98 16 10 C -0.12 -4.02 5.50 30.43 0.17 -3.85 16 11 C 0.16 6.15 2.59 45.51 0.12 6.27 16 12 H 0.03 1.17 7.94 -2.39 -0.02 1.15 16 13 C -0.11 -3.99 2.84 -9.97 -0.03 -4.02 16 14 H 0.05 2.24 8.11 -2.39 -0.02 2.22 16 15 C -0.12 -4.49 6.55 31.63 0.21 -4.28 16 16 C 0.17 8.78 5.50 87.12 0.48 9.26 16 17 N -0.61 -30.94 3.30 -673.49 -2.22 -33.16 16 18 C -0.23 -12.69 9.84 84.03 0.83 -11.86 16 19 H 0.09 4.48 7.31 -2.91 -0.02 4.45 16 20 C -0.07 -4.01 5.45 84.86 0.46 -3.55 16 21 N -0.95 -57.90 10.44 21.65 0.23 -57.67 16 22 Si 0.97 45.53 29.56 68.60 2.03 47.56 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C 0.13 4.00 6.01 85.90 0.52 4.52 16 27 C -0.09 -1.62 7.36 22.53 0.17 -1.46 16 28 C -0.13 -1.84 9.68 22.23 0.22 -1.63 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.08 0.51 8.08 -2.38 -0.02 0.49 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.12 2.92 7.97 -2.91 -0.02 2.89 16 34 H 0.10 1.83 7.74 -2.39 -0.02 1.81 16 35 H 0.11 2.33 4.55 -2.39 -0.01 2.32 16 36 H 0.08 2.57 7.67 -2.39 -0.02 2.55 16 37 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 38 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 40 H 0.00 -0.26 8.07 -2.38 -0.02 -0.28 16 41 H 0.03 1.75 6.70 -2.39 -0.02 1.74 16 42 H 0.24 14.53 8.31 -92.70 -0.77 13.76 16 43 H 0.09 2.37 8.08 -2.38 -0.02 2.36 16 44 H 0.08 2.70 6.98 -2.39 -0.02 2.68 16 45 H 0.15 2.26 5.65 -2.91 -0.02 2.25 16 46 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -72.93 357.43 3.57 -69.36 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.97 Total: 14.46 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.09 Total: 1.18 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.46 Total: -110.44 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.06 Total: -22.12 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.93 3.57 -69.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036877460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.385 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds