Wall clock time and date at job start Tue Mar 31 2020 10:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99971 * 2 1 4 4 C 1.38214 * 120.00120 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99766 * 359.70340 * 5 4 3 7 7 C 1.38217 * 119.99936 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.00204 * 0.02562 * 7 2 1 9 9 H 1.09008 * 115.54653 * 334.32069 * 8 7 2 10 10 C 1.53068 * 117.51444 * 188.60564 * 8 7 2 11 11 C 1.52996 * 117.50558 * 119.99275 * 8 7 2 12 12 H 1.09004 * 117.49399 * 0.02562 * 11 8 7 13 13 C 1.50694 * 117.50153 * 215.00140 * 11 8 7 14 14 O 1.21277 * 120.00088 * 0.09056 * 13 11 8 15 15 N 1.34784 * 119.99553 * 180.08458 * 13 11 8 16 16 C 1.46498 * 119.99388 * 180.02562 * 15 13 11 17 17 C 1.53007 * 109.46985 * 180.02562 * 16 15 13 18 18 H 1.08997 * 112.96022 * 53.31998 * 17 16 15 19 19 C 1.53941 * 113.77030 * 184.99717 * 17 16 15 20 20 C 1.53946 * 86.28949 * 138.02080 * 19 17 16 21 21 N 1.47580 * 86.24073 * 336.33904 * 20 19 17 22 22 C 1.36934 * 134.49452 * 204.69918 * 21 20 19 23 23 H 1.08004 * 120.00390 * 180.02562 * 22 21 20 24 24 C 1.38818 * 120.00077 * 359.97438 * 22 21 20 25 25 N 1.31621 * 119.99741 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00270 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46771 * 90.00095 * 26 24 22 28 28 H 1.48498 * 109.47057 * 210.00353 * 26 24 22 29 29 H 1.48505 * 109.46965 * 330.00454 * 26 24 22 30 30 H 1.09003 * 109.47143 * 270.02553 * 1 2 3 31 31 H 1.08992 * 109.47030 * 30.02459 * 1 2 3 32 32 H 1.09001 * 109.46885 * 150.02930 * 1 2 3 33 33 H 1.07998 * 120.00118 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.99963 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.99569 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99572 * 180.29962 * 6 5 4 37 37 H 1.09004 * 117.51419 * 145.04100 * 10 8 7 38 38 H 1.09002 * 117.49402 * 0.02562 * 10 8 7 39 39 H 0.96993 * 120.00447 * 0.02562 * 15 13 11 40 40 H 1.08996 * 109.47275 * 60.00313 * 16 15 13 41 41 H 1.09001 * 109.47285 * 300.00203 * 16 15 13 42 42 H 1.09005 * 113.74495 * 23.67841 * 19 17 16 43 43 H 1.08995 * 113.74476 * 252.36809 * 19 17 16 44 44 H 1.09002 * 113.76900 * 90.69607 * 20 19 17 45 45 H 1.09000 * 113.76969 * 221.98028 * 20 19 17 46 46 H 0.96996 * 119.99802 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1970 0.0005 8 6 1.4447 -2.5021 0.0005 9 1 0.4418 -2.4659 0.4263 10 6 2.2535 -3.7855 0.2043 11 6 1.6793 -3.4534 -1.1745 12 1 2.3791 -3.1355 -1.9474 13 6 0.5065 -4.2688 -1.6546 14 8 -0.5730 -4.1552 -1.1137 15 7 0.6573 -5.1242 -2.6853 16 6 -0.4830 -5.9164 -3.1524 17 6 -0.0453 -6.7994 -4.3228 18 1 0.8279 -7.4094 -4.0918 19 6 -1.1984 -7.5868 -4.9711 20 6 -0.5564 -7.2202 -6.3215 21 7 0.0541 -6.0796 -5.6113 22 6 0.5219 -4.8506 -5.9930 23 1 0.9352 -4.1774 -5.2565 24 6 0.4659 -4.4702 -7.3269 25 7 -0.0374 -5.2907 -8.2246 26 14 1.1046 -2.7939 -7.8477 27 1 2.5445 -2.8992 -8.1959 28 1 0.3427 -2.3196 -9.0308 29 1 0.9347 -1.8304 -6.7305 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.1207 -2.1322 0.0111 37 1 1.7828 -4.5938 0.7640 38 1 3.3306 -3.6856 0.3387 39 1 1.5207 -5.2152 -3.1177 40 1 -1.2801 -5.2485 -3.4790 41 1 -0.8461 -6.5450 -2.3393 42 1 -2.1791 -7.1373 -4.8150 43 1 -1.1790 -8.6542 -4.7514 44 1 0.1667 -7.9539 -6.6777 45 1 -1.2768 -6.9275 -7.0853 46 1 -0.0769 -5.0248 -9.1565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038796652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:01 Heat of formation + Delta-G solvation = 60.398193 kcal Electronic energy + Delta-G solvation = -25564.394214 eV Core-core repulsion = 22035.123697 eV Total energy + Delta-G solvation = -3529.270517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33094 -39.20384 -37.97201 -36.29930 -34.02335 -32.94754 -32.18534 -30.74056 -28.21635 -27.77178 -26.97638 -24.33375 -23.91901 -23.36965 -21.83020 -21.53615 -20.40553 -19.85407 -19.04881 -17.53460 -16.78343 -16.39192 -15.72587 -15.41672 -15.30126 -14.94230 -14.68958 -14.27141 -14.14876 -13.89122 -13.68774 -13.31695 -13.20114 -13.01268 -12.47997 -12.35299 -12.25942 -12.04007 -11.87444 -11.44537 -11.28567 -11.11854 -11.04312 -11.01392 -10.75702 -10.73076 -10.55281 -10.50185 -10.02477 -9.76599 -9.65657 -9.35224 -8.89010 -8.80471 -8.60457 -8.54844 -6.90296 -5.77086 -3.09472 1.16471 1.25936 2.73918 3.36951 3.40043 3.43531 3.44682 3.58330 3.99272 4.41117 4.48677 4.63750 4.73371 4.80095 4.84720 4.89492 5.04776 5.12357 5.21289 5.25803 5.39475 5.41289 5.51249 5.57157 5.58288 5.61134 5.70463 5.76737 5.85651 5.90796 5.93817 5.99014 6.07907 6.11644 6.30698 6.37461 6.38991 6.39687 6.56782 6.61082 6.70829 6.87901 6.88890 7.23734 7.39884 7.58608 7.89591 7.97665 8.55344 9.03691 9.70329 10.58741 11.39634 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003549 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.245535 B = 7887.872746 C = 9270.082754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.052 4.052 8 C -0.086 4.086 9 H 0.128 0.872 10 C -0.146 4.146 11 C -0.174 4.174 12 H 0.125 0.875 13 C 0.540 3.460 14 O -0.552 6.552 15 N -0.708 5.708 16 C 0.124 3.876 17 C 0.125 3.875 18 H 0.050 0.950 19 C -0.156 4.156 20 C 0.158 3.842 21 N -0.603 5.603 22 C -0.218 4.218 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 5.582 17.711 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.183 4.183 11 C -0.195 4.195 12 H 0.143 0.857 13 C 0.326 3.674 14 O -0.431 6.431 15 N -0.357 5.357 16 C -0.001 4.001 17 C 0.018 3.982 18 H 0.067 0.933 19 C -0.195 4.195 20 C 0.033 3.967 21 N -0.329 5.329 22 C -0.346 4.346 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.238 0.762 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.255 5.905 17.822 19.496 hybrid contribution 1.052 0.916 -0.823 1.619 sum 6.306 6.820 16.999 19.371 Atomic orbital electron populations 1.20885 0.90993 1.03553 1.02397 1.19769 0.96300 0.92328 0.98857 1.21029 0.94280 0.97397 1.01118 1.21121 0.94312 0.98031 1.00512 1.21082 0.99760 0.92453 1.01000 1.21053 0.93541 0.98342 1.00448 1.19010 0.93019 0.92800 1.00389 1.21075 1.00742 0.87770 1.00810 0.85403 1.23117 1.00165 0.98783 0.96258 1.22379 1.00509 1.03104 0.93500 0.85748 1.19501 0.88460 0.79514 0.79953 1.90653 1.27495 1.67153 1.57784 1.45885 1.14618 1.41803 1.33416 1.21761 0.88783 0.93808 0.95733 1.22569 0.95915 0.92004 0.87730 0.93274 1.23762 0.98142 0.97725 0.99847 1.22195 0.94128 0.87377 0.92968 1.46142 1.72479 1.12595 1.01710 1.18938 1.33820 0.89575 0.92255 0.90405 1.24746 1.01656 0.98178 0.95741 1.69816 1.50208 1.35408 1.01251 0.86215 0.78291 0.83719 0.78154 1.21672 1.21610 1.20652 0.91113 0.91564 0.90470 0.86076 0.86229 0.86146 0.85836 0.87800 0.87585 0.76228 0.90982 0.92209 0.90502 0.92783 0.95607 0.90830 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.33 36.01 0.34 -0.99 16 2 C -0.07 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.12 -1.23 9.30 -39.59 -0.37 -1.60 16 7 C -0.05 -0.62 5.61 -104.63 -0.59 -1.21 16 8 C -0.09 -1.05 4.66 -91.74 -0.43 -1.48 16 9 H 0.13 1.71 6.43 -51.92 -0.33 1.37 16 10 C -0.15 -1.53 9.57 -26.70 -0.26 -1.79 16 11 C -0.17 -2.29 5.82 -91.78 -0.53 -2.83 16 12 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 13 C 0.54 9.01 7.61 -10.98 -0.08 8.93 16 14 O -0.55 -10.84 16.26 5.56 0.09 -10.75 16 15 N -0.71 -11.90 5.56 -60.29 -0.33 -12.24 16 16 C 0.12 2.23 5.56 -4.04 -0.02 2.21 16 17 C 0.13 2.39 4.34 -66.67 -0.29 2.10 16 18 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.16 -2.83 7.86 -25.80 -0.20 -3.04 16 20 C 0.16 3.63 7.51 -2.97 -0.02 3.61 16 21 N -0.60 -14.65 3.59 -169.64 -0.61 -15.26 16 22 C -0.22 -5.87 10.53 -15.06 -0.16 -6.03 16 23 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.92 -27.00 11.38 55.49 0.63 -26.37 16 26 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.08 0.97 6.65 -51.93 -0.35 0.63 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.09 6.02 -52.49 -0.32 0.78 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.11 0.89 6.17 -51.93 -0.32 0.57 16 39 H 0.40 6.41 8.47 -40.82 -0.35 6.06 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -32.20 379.06 -11.11 -43.31 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.07 Total: 7.20 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -4.51 Total: -8.75 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.31 Total: -53.87 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.20 -11.11 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038796652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.708 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds