Wall clock time and date at job start Tue Mar 31 2020 10:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99971 * 2 1 4 4 C 1.38214 * 120.00120 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99766 * 359.70340 * 5 4 3 7 7 C 1.38217 * 119.99936 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.00204 * 0.02562 * 7 2 1 9 9 H 1.09008 * 115.54653 * 334.32069 * 8 7 2 10 10 C 1.53068 * 117.51444 * 188.60564 * 8 7 2 11 11 C 1.52996 * 117.50558 * 119.99275 * 8 7 2 12 12 H 1.09004 * 117.49399 * 0.02562 * 11 8 7 13 13 C 1.50694 * 117.50153 * 215.00140 * 11 8 7 14 14 O 1.21277 * 120.00088 * 0.09056 * 13 11 8 15 15 N 1.34784 * 119.99553 * 180.08458 * 13 11 8 16 16 C 1.46498 * 119.99388 * 180.02562 * 15 13 11 17 17 C 1.53007 * 109.46985 * 180.02562 * 16 15 13 18 18 H 1.08997 * 112.96022 * 53.31998 * 17 16 15 19 19 C 1.53941 * 113.77030 * 184.99717 * 17 16 15 20 20 C 1.53946 * 86.28949 * 138.02080 * 19 17 16 21 21 N 1.47580 * 86.24073 * 336.33904 * 20 19 17 22 22 C 1.36934 * 134.49452 * 204.69918 * 21 20 19 23 23 H 1.08004 * 120.00390 * 180.02562 * 22 21 20 24 24 C 1.38818 * 120.00077 * 359.97438 * 22 21 20 25 25 N 1.31621 * 119.99741 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00270 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46771 * 90.00095 * 26 24 22 28 28 H 1.48498 * 109.47057 * 210.00353 * 26 24 22 29 29 H 1.48505 * 109.46965 * 330.00454 * 26 24 22 30 30 H 1.09003 * 109.47143 * 270.02553 * 1 2 3 31 31 H 1.08992 * 109.47030 * 30.02459 * 1 2 3 32 32 H 1.09001 * 109.46885 * 150.02930 * 1 2 3 33 33 H 1.07998 * 120.00118 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.99963 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.99569 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99572 * 180.29962 * 6 5 4 37 37 H 1.09004 * 117.51419 * 145.04100 * 10 8 7 38 38 H 1.09002 * 117.49402 * 0.02562 * 10 8 7 39 39 H 0.96993 * 120.00447 * 0.02562 * 15 13 11 40 40 H 1.08996 * 109.47275 * 60.00313 * 16 15 13 41 41 H 1.09001 * 109.47285 * 300.00203 * 16 15 13 42 42 H 1.09005 * 113.74495 * 23.67841 * 19 17 16 43 43 H 1.08995 * 113.74476 * 252.36809 * 19 17 16 44 44 H 1.09002 * 113.76900 * 90.69607 * 20 19 17 45 45 H 1.09000 * 113.76969 * 221.98028 * 20 19 17 46 46 H 0.96996 * 119.99802 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1970 0.0005 8 6 1.4447 -2.5021 0.0005 9 1 0.4418 -2.4659 0.4263 10 6 2.2535 -3.7855 0.2043 11 6 1.6793 -3.4534 -1.1745 12 1 2.3791 -3.1355 -1.9474 13 6 0.5065 -4.2688 -1.6546 14 8 -0.5730 -4.1552 -1.1137 15 7 0.6573 -5.1242 -2.6853 16 6 -0.4830 -5.9164 -3.1524 17 6 -0.0453 -6.7994 -4.3228 18 1 0.8279 -7.4094 -4.0918 19 6 -1.1984 -7.5868 -4.9711 20 6 -0.5564 -7.2202 -6.3215 21 7 0.0541 -6.0796 -5.6113 22 6 0.5219 -4.8506 -5.9930 23 1 0.9352 -4.1774 -5.2565 24 6 0.4659 -4.4702 -7.3269 25 7 -0.0374 -5.2907 -8.2246 26 14 1.1046 -2.7939 -7.8477 27 1 2.5445 -2.8992 -8.1959 28 1 0.3427 -2.3196 -9.0308 29 1 0.9347 -1.8304 -6.7305 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.1207 -2.1322 0.0111 37 1 1.7828 -4.5938 0.7640 38 1 3.3306 -3.6856 0.3387 39 1 1.5207 -5.2152 -3.1177 40 1 -1.2801 -5.2485 -3.4790 41 1 -0.8461 -6.5450 -2.3393 42 1 -2.1791 -7.1373 -4.8150 43 1 -1.1790 -8.6542 -4.7514 44 1 0.1667 -7.9539 -6.6777 45 1 -1.2768 -6.9275 -7.0853 46 1 -0.0769 -5.0248 -9.1565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038796652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:00 Heat of formation + Delta-G solvation = 42.344924 kcal Electronic energy + Delta-G solvation = -25565.177062 eV Core-core repulsion = 22035.123697 eV Total energy + Delta-G solvation = -3530.053366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37414 -40.34215 -39.55270 -37.32529 -35.49153 -34.20340 -33.73840 -31.56638 -29.96133 -29.43570 -27.80593 -25.48519 -25.29126 -24.83792 -23.31051 -22.33325 -21.50304 -21.04219 -20.64714 -18.88990 -18.21458 -17.51506 -17.09463 -16.99674 -16.39439 -16.18927 -15.81893 -15.66185 -15.52424 -15.10711 -14.81483 -14.65853 -14.64383 -13.96910 -13.62569 -13.53896 -13.29466 -13.20085 -13.06642 -12.96474 -12.84430 -12.69293 -12.57664 -12.34259 -12.09162 -11.90304 -11.84579 -11.62940 -11.52411 -11.42832 -11.34178 -10.86218 -10.79761 -10.02607 -9.67170 -9.39231 -8.88497 -7.87327 -5.18482 0.36161 0.48376 1.41899 1.43426 1.50422 1.50893 2.18297 2.46331 2.66127 3.07080 3.31272 3.37815 3.56415 3.69267 3.84284 3.92694 3.99657 4.01235 4.10143 4.18451 4.20952 4.25903 4.35194 4.43171 4.62086 4.64099 4.70093 4.73498 4.74571 4.76767 4.87672 4.93892 4.96155 5.05686 5.09697 5.12166 5.17685 5.28931 5.33341 5.46072 5.60017 5.61541 5.62572 5.74956 5.75432 5.98084 6.12690 6.56724 6.95578 7.23304 7.65075 8.60214 9.29574 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003549 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.245535 B = 7887.872746 C = 9270.082754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.122 4.122 7 C -0.070 4.070 8 C -0.088 4.088 9 H 0.110 0.890 10 C -0.118 4.118 11 C -0.186 4.186 12 H 0.131 0.869 13 C 0.537 3.463 14 O -0.587 6.587 15 N -0.708 5.708 16 C 0.133 3.867 17 C 0.133 3.867 18 H 0.074 0.926 19 C -0.131 4.131 20 C 0.150 3.850 21 N -0.630 5.630 22 C -0.211 4.211 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.964 3.036 27 H -0.284 1.284 28 H -0.298 1.298 29 H -0.275 1.275 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.409 0.591 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.023 0.977 45 H 0.038 0.962 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 5.806 19.693 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.139 4.139 7 C -0.070 4.070 8 C -0.106 4.106 9 H 0.128 0.872 10 C -0.155 4.155 11 C -0.207 4.207 12 H 0.149 0.851 13 C 0.325 3.675 14 O -0.468 6.468 15 N -0.357 5.357 16 C 0.008 3.992 17 C 0.027 3.973 18 H 0.091 0.909 19 C -0.170 4.170 20 C 0.024 3.976 21 N -0.357 5.357 22 C -0.340 4.340 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.604 5.604 26 Si 0.793 3.207 27 H -0.211 1.211 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.293 6.116 19.841 22.006 hybrid contribution 0.412 0.838 -1.357 1.648 sum 7.705 6.954 18.484 21.198 Atomic orbital electron populations 1.20834 0.91162 1.02660 1.02777 1.19979 0.96547 0.93104 0.99846 1.21280 0.95007 0.97550 1.00999 1.21478 0.94153 0.99238 0.99487 1.21443 1.01105 0.92138 1.00080 1.21304 0.93005 0.99616 1.00015 1.19098 0.93807 0.92433 1.01650 1.20998 1.00574 0.88936 1.00139 0.87234 1.23266 1.01553 0.97446 0.93253 1.22302 0.99721 1.03890 0.94784 0.85090 1.20080 0.88995 0.79153 0.79284 1.90634 1.29145 1.68185 1.58856 1.45881 1.14428 1.41855 1.33503 1.21537 0.88342 0.93367 0.95969 1.22739 0.96946 0.91553 0.86058 0.90914 1.23558 0.97439 1.00161 0.95799 1.22170 0.93800 0.87194 0.94413 1.46490 1.72386 1.12490 1.04335 1.19277 1.31719 0.90811 0.92203 0.89925 1.25470 1.03191 1.01314 0.96216 1.69993 1.52424 1.36965 1.00974 0.85286 0.77671 0.80344 0.77355 1.21134 1.22502 1.20076 0.90176 0.90802 0.92873 0.84643 0.83928 0.83750 0.84036 0.87533 0.84712 0.75591 0.94305 0.90120 0.90500 0.88636 0.95922 0.94394 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.33 71.24 0.66 -1.94 16 2 C -0.09 -2.17 5.88 -19.86 -0.12 -2.29 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 6 C -0.12 -2.29 9.30 22.27 0.21 -2.08 16 7 C -0.07 -1.59 5.61 -19.87 -0.11 -1.70 16 8 C -0.09 -2.10 4.66 -11.52 -0.05 -2.15 16 9 H 0.11 3.00 6.43 -2.38 -0.02 2.99 16 10 C -0.12 -2.21 9.57 30.62 0.29 -1.92 16 11 C -0.19 -4.69 5.82 -11.54 -0.07 -4.76 16 12 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 13 C 0.54 17.67 7.61 87.65 0.67 18.34 16 14 O -0.59 -23.25 16.26 -3.02 -0.05 -23.30 16 15 N -0.71 -23.04 5.56 -463.06 -2.57 -25.61 16 16 C 0.13 4.64 5.56 86.38 0.48 5.12 16 17 C 0.13 4.83 4.34 45.03 0.20 5.02 16 18 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 19 C -0.13 -4.51 7.86 31.25 0.25 -4.26 16 20 C 0.15 6.87 7.51 86.48 0.65 7.52 16 21 N -0.63 -30.51 3.59 -690.63 -2.48 -32.99 16 22 C -0.21 -11.40 10.53 84.04 0.88 -10.52 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 25 N -0.95 -57.57 11.38 21.65 0.25 -57.32 16 26 Si 0.96 46.26 29.55 68.60 2.03 48.28 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.05 1.41 6.65 -2.39 -0.02 1.39 16 33 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 35 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.14 2.01 6.02 -2.91 -0.02 1.99 16 37 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.14 1.74 6.17 -2.39 -0.01 1.72 16 39 H 0.41 12.39 8.47 -92.71 -0.79 11.60 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.08 2.66 8.10 -2.38 -0.02 2.64 16 43 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.04 2.00 7.15 -2.39 -0.02 1.98 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -71.41 379.06 2.44 -68.97 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.20 Total: 27.30 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.07 Total: -5.33 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.81 Total: -115.93 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.41 2.44 -68.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038796652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.314 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds