Wall clock time and date at job start Tue Mar 31 2020 10:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38256 * 119.99868 * 2 1 4 4 C 1.38211 * 119.99825 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00114 * 359.80802 * 4 3 2 6 6 C 1.38214 * 119.99847 * 0.44321 * 5 4 3 7 7 C 1.50697 * 120.00046 * 179.78750 * 6 5 4 8 8 H 1.09002 * 115.54932 * 154.14367 * 7 6 5 9 9 C 1.53000 * 117.50034 * 8.47303 * 7 6 5 10 10 C 1.53002 * 117.49992 * 299.81530 * 7 6 5 11 11 H 1.08999 * 117.49664 * 0.02562 * 10 7 6 12 12 C 1.50695 * 117.50044 * 215.00770 * 10 7 6 13 13 O 1.21285 * 120.00075 * 359.97438 * 12 10 7 14 14 N 1.34778 * 120.00347 * 180.02562 * 12 10 7 15 15 C 1.46503 * 120.00193 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47018 * 179.97438 * 15 14 12 17 17 H 1.09006 * 112.73919 * 303.75960 * 16 15 14 18 18 C 1.53492 * 113.46539 * 172.94207 * 16 15 14 19 19 C 1.53500 * 83.34079 * 219.14863 * 18 16 15 20 20 N 1.47067 * 113.46701 * 74.49993 * 16 15 14 21 21 C 1.36934 * 136.06141 * 321.87415 * 20 16 15 22 22 H 1.07997 * 119.99890 * 359.97438 * 21 20 16 23 23 C 1.38817 * 119.99844 * 179.97438 * 21 20 16 24 24 N 1.31621 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47441 * 59.99915 * 25 23 21 27 27 H 1.48502 * 109.47035 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47004 * 299.99577 * 25 23 21 29 29 C 1.38211 * 120.00106 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47329 * 269.98318 * 1 2 3 31 31 H 1.09004 * 109.46792 * 29.98051 * 1 2 3 32 32 H 1.08996 * 109.47006 * 149.97978 * 1 2 3 33 33 H 1.08000 * 120.00136 * 359.97430 * 3 2 1 34 34 H 1.08006 * 119.99966 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.00104 * 180.23556 * 5 4 3 36 36 H 1.09008 * 117.49673 * 359.97438 * 9 7 6 37 37 H 1.08999 * 117.49942 * 144.97208 * 9 7 6 38 38 H 0.97001 * 119.99909 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.46903 * 299.99354 * 15 14 12 40 40 H 1.09001 * 109.46819 * 59.99500 * 15 14 12 41 41 H 1.08994 * 114.20760 * 332.73429 * 18 16 15 42 42 H 1.08997 * 114.20796 * 105.56505 * 18 16 15 43 43 H 1.09000 * 113.46921 * 271.28430 * 19 18 16 44 44 H 1.09008 * 113.46311 * 140.84472 * 19 18 16 45 45 H 0.96996 * 119.99337 * 180.02562 * 24 23 21 46 46 H 1.08004 * 119.99676 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0051 6 6 3.5807 -1.1970 -0.0002 7 6 4.3341 -2.5020 -0.0001 8 1 3.8011 -3.3526 0.4250 9 6 5.8491 -2.4432 0.2059 10 6 5.2763 -2.7740 -1.1745 11 1 5.3515 -2.0087 -1.9470 12 6 5.3963 -4.1971 -1.6553 13 8 4.7593 -5.0758 -1.1139 14 7 6.2123 -4.4937 -2.6862 15 6 6.3293 -5.8774 -3.1532 16 6 7.3114 -5.9389 -4.3247 17 1 7.0316 -5.2769 -5.1443 18 6 7.6354 -7.3696 -4.7762 19 6 9.0535 -6.8056 -4.9408 20 7 8.7181 -5.8042 -3.9173 21 6 9.4108 -5.0693 -2.9925 22 1 8.8858 -4.3818 -2.3460 23 6 10.7879 -5.2081 -2.8861 24 7 11.4277 -6.0464 -3.6737 25 14 11.7329 -4.2051 -1.6250 26 1 11.2338 -4.5247 -0.2634 27 1 13.1783 -4.5345 -1.7129 28 1 11.5381 -2.7582 -1.8967 29 6 2.1981 -1.1969 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0093 36 1 6.3008 -1.4603 0.3409 37 1 6.3127 -3.2547 0.7668 38 1 6.7220 -3.7910 -3.1189 39 1 6.6932 -6.5056 -2.3402 40 1 5.3524 -6.2346 -3.4792 41 1 7.5408 -8.1186 -3.9900 42 1 7.1592 -7.6616 -5.7122 43 1 9.2380 -6.3753 -5.9252 44 1 9.8352 -7.4989 -4.6300 45 1 12.3899 -6.1436 -3.5990 46 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038801609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:05 Heat of formation + Delta-G solvation = 61.943326 kcal Electronic energy + Delta-G solvation = -25190.660800 eV Core-core repulsion = 21661.457285 eV Total energy + Delta-G solvation = -3529.203515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25108 -39.25426 -38.18701 -36.44582 -34.00312 -32.71320 -32.23072 -31.01263 -28.23126 -27.81293 -27.08698 -24.33014 -23.55465 -23.48720 -22.28168 -21.65334 -20.15735 -19.66189 -19.13935 -17.52692 -16.89721 -16.46027 -15.73580 -15.42085 -15.26442 -15.06968 -14.59114 -14.30674 -14.05171 -13.93389 -13.81176 -13.37512 -13.28231 -12.91201 -12.60706 -12.47962 -12.35515 -12.01183 -11.87991 -11.55030 -11.43597 -11.12700 -11.09145 -10.99471 -10.79464 -10.74677 -10.58766 -10.46379 -10.01381 -9.85993 -9.63718 -9.22501 -8.91973 -8.83116 -8.65066 -8.55528 -6.92341 -5.78899 -3.11633 1.11657 1.21074 2.76594 3.34937 3.36714 3.40987 3.42302 3.61163 4.01603 4.40037 4.44488 4.60483 4.71415 4.75737 4.87142 4.93869 5.00247 5.12381 5.17593 5.23625 5.27831 5.33891 5.38324 5.49572 5.55127 5.57776 5.65349 5.73997 5.85490 5.89153 5.90953 5.97787 6.01406 6.09830 6.30231 6.31505 6.39448 6.39869 6.49800 6.58324 6.70919 6.83197 6.89878 7.20623 7.37536 7.55565 7.91820 7.95386 8.57371 9.00745 9.68066 10.60935 11.38319 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002910 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.851678 B = 9618.420486 C =10814.127079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.044 4.044 7 C -0.088 4.088 8 H 0.126 0.874 9 C -0.143 4.143 10 C -0.173 4.173 11 H 0.123 0.877 12 C 0.539 3.461 13 O -0.553 6.553 14 N -0.708 5.708 15 C 0.122 3.878 16 C 0.127 3.873 17 H 0.048 0.952 18 C -0.161 4.161 19 C 0.151 3.849 20 N -0.602 5.602 21 C -0.215 4.215 22 H 0.080 0.920 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 C -0.111 4.111 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.404 0.596 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.254 0.746 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.703 11.534 4.630 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.044 4.044 7 C -0.107 4.107 8 H 0.144 0.856 9 C -0.180 4.180 10 C -0.194 4.194 11 H 0.141 0.859 12 C 0.325 3.675 13 O -0.432 6.432 14 N -0.357 5.357 15 C -0.003 4.003 16 C 0.019 3.981 17 H 0.065 0.935 18 C -0.200 4.200 19 C 0.026 3.974 20 N -0.328 5.328 21 C -0.342 4.342 22 H 0.098 0.902 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.739 3.261 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.129 4.129 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.820 10.996 5.175 21.569 hybrid contribution 1.009 1.028 0.249 1.462 sum -16.810 12.024 5.424 21.368 Atomic orbital electron populations 1.20792 0.91217 1.02790 1.02298 1.19902 0.96053 0.93075 0.99608 1.21014 0.94304 0.97405 1.01825 1.21105 0.94273 0.97893 0.99902 1.21101 1.00212 0.91911 1.01119 1.19146 0.93281 0.93029 0.98913 1.21072 0.91996 0.96623 1.00960 0.85612 1.23141 0.95028 1.03779 0.96070 1.22349 1.07101 0.96371 0.93604 0.85926 1.19515 0.79237 0.88894 0.79840 1.90655 1.46352 1.48987 1.57196 1.45887 1.44559 1.11222 1.34007 1.21815 0.98568 0.82017 0.97880 1.22415 0.87050 0.95188 0.93400 0.93474 1.23660 1.00407 0.95932 1.00030 1.22034 0.93439 0.90745 0.91220 1.45680 1.00901 1.48430 1.37742 1.18813 0.89114 1.17141 1.09126 0.90199 1.24781 0.96250 0.99885 0.99485 1.69818 1.07904 1.38581 1.40272 0.86253 0.79178 0.79591 0.81075 1.21071 1.21573 1.21174 1.20888 0.93366 0.97760 1.00865 0.91200 0.91614 0.91453 0.86284 0.86040 0.85746 0.87467 0.87527 0.76153 0.91119 0.92320 0.90197 0.92327 0.95741 0.90967 0.93618 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.11 -1.06 10.05 -39.58 -0.40 -1.46 16 5 C -0.13 -1.30 9.30 -39.58 -0.37 -1.67 16 6 C -0.04 -0.50 5.61 -104.63 -0.59 -1.08 16 7 C -0.09 -1.09 5.55 -91.77 -0.51 -1.60 16 8 H 0.13 1.70 7.67 -51.93 -0.40 1.30 16 9 C -0.14 -1.74 9.57 -26.70 -0.26 -1.99 16 10 C -0.17 -2.32 5.83 -91.74 -0.53 -2.85 16 11 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 12 C 0.54 9.17 7.61 -10.99 -0.08 9.08 16 13 O -0.55 -11.08 16.26 5.55 0.09 -10.99 16 14 N -0.71 -12.12 5.33 -60.29 -0.32 -12.44 16 15 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 16 C 0.13 2.45 4.10 -72.41 -0.30 2.15 16 17 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 18 C -0.16 -2.94 8.03 -26.22 -0.21 -3.15 16 19 C 0.15 3.45 7.39 -8.51 -0.06 3.39 16 20 N -0.60 -14.61 3.65 -177.00 -0.65 -15.25 16 21 C -0.21 -5.71 10.55 -15.06 -0.16 -5.87 16 22 H 0.08 2.03 7.50 -52.49 -0.39 1.63 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -26.90 11.51 55.49 0.64 -26.26 16 25 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 C -0.11 -1.19 9.39 -39.59 -0.37 -1.57 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.14 6.02 -52.49 -0.32 0.83 16 36 H 0.11 1.08 6.17 -51.92 -0.32 0.76 16 37 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.40 6.60 8.37 -40.82 -0.34 6.26 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.84 7.12 -51.92 -0.37 1.48 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -31.98 381.99 -11.29 -43.26 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.19 Total: 7.30 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -4.59 Total: -8.14 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.33 Total: -53.95 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.98 -11.29 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038801609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.207 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds