Wall clock time and date at job start Tue Mar 31 2020 10:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38256 * 119.99868 * 2 1 4 4 C 1.38211 * 119.99825 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00114 * 359.80802 * 4 3 2 6 6 C 1.38214 * 119.99847 * 0.44321 * 5 4 3 7 7 C 1.50697 * 120.00046 * 179.78750 * 6 5 4 8 8 H 1.09002 * 115.54932 * 154.14367 * 7 6 5 9 9 C 1.53000 * 117.50034 * 8.47303 * 7 6 5 10 10 C 1.53002 * 117.49992 * 299.81530 * 7 6 5 11 11 H 1.08999 * 117.49664 * 0.02562 * 10 7 6 12 12 C 1.50695 * 117.50044 * 215.00770 * 10 7 6 13 13 O 1.21285 * 120.00075 * 359.97438 * 12 10 7 14 14 N 1.34778 * 120.00347 * 180.02562 * 12 10 7 15 15 C 1.46503 * 120.00193 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47018 * 179.97438 * 15 14 12 17 17 H 1.09006 * 112.73919 * 303.75960 * 16 15 14 18 18 C 1.53492 * 113.46539 * 172.94207 * 16 15 14 19 19 C 1.53500 * 83.34079 * 219.14863 * 18 16 15 20 20 N 1.47067 * 113.46701 * 74.49993 * 16 15 14 21 21 C 1.36934 * 136.06141 * 321.87415 * 20 16 15 22 22 H 1.07997 * 119.99890 * 359.97438 * 21 20 16 23 23 C 1.38817 * 119.99844 * 179.97438 * 21 20 16 24 24 N 1.31621 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47441 * 59.99915 * 25 23 21 27 27 H 1.48502 * 109.47035 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47004 * 299.99577 * 25 23 21 29 29 C 1.38211 * 120.00106 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47329 * 269.98318 * 1 2 3 31 31 H 1.09004 * 109.46792 * 29.98051 * 1 2 3 32 32 H 1.08996 * 109.47006 * 149.97978 * 1 2 3 33 33 H 1.08000 * 120.00136 * 359.97430 * 3 2 1 34 34 H 1.08006 * 119.99966 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.00104 * 180.23556 * 5 4 3 36 36 H 1.09008 * 117.49673 * 359.97438 * 9 7 6 37 37 H 1.08999 * 117.49942 * 144.97208 * 9 7 6 38 38 H 0.97001 * 119.99909 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.46903 * 299.99354 * 15 14 12 40 40 H 1.09001 * 109.46819 * 59.99500 * 15 14 12 41 41 H 1.08994 * 114.20760 * 332.73429 * 18 16 15 42 42 H 1.08997 * 114.20796 * 105.56505 * 18 16 15 43 43 H 1.09000 * 113.46921 * 271.28430 * 19 18 16 44 44 H 1.09008 * 113.46311 * 140.84472 * 19 18 16 45 45 H 0.96996 * 119.99337 * 180.02562 * 24 23 21 46 46 H 1.08004 * 119.99676 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0051 6 6 3.5807 -1.1970 -0.0002 7 6 4.3341 -2.5020 -0.0001 8 1 3.8011 -3.3526 0.4250 9 6 5.8491 -2.4432 0.2059 10 6 5.2763 -2.7740 -1.1745 11 1 5.3515 -2.0087 -1.9470 12 6 5.3963 -4.1971 -1.6553 13 8 4.7593 -5.0758 -1.1139 14 7 6.2123 -4.4937 -2.6862 15 6 6.3293 -5.8774 -3.1532 16 6 7.3114 -5.9389 -4.3247 17 1 7.0316 -5.2769 -5.1443 18 6 7.6354 -7.3696 -4.7762 19 6 9.0535 -6.8056 -4.9408 20 7 8.7181 -5.8042 -3.9173 21 6 9.4108 -5.0693 -2.9925 22 1 8.8858 -4.3818 -2.3460 23 6 10.7879 -5.2081 -2.8861 24 7 11.4277 -6.0464 -3.6737 25 14 11.7329 -4.2051 -1.6250 26 1 11.2338 -4.5247 -0.2634 27 1 13.1783 -4.5345 -1.7129 28 1 11.5381 -2.7582 -1.8967 29 6 2.1981 -1.1969 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0093 36 1 6.3008 -1.4603 0.3409 37 1 6.3127 -3.2547 0.7668 38 1 6.7220 -3.7910 -3.1189 39 1 6.6932 -6.5056 -2.3402 40 1 5.3524 -6.2346 -3.4792 41 1 7.5408 -8.1186 -3.9900 42 1 7.1592 -7.6616 -5.7122 43 1 9.2380 -6.3753 -5.9252 44 1 9.8352 -7.4989 -4.6300 45 1 12.3899 -6.1436 -3.5990 46 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038801609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:04 Heat of formation + Delta-G solvation = 44.318828 kcal Electronic energy + Delta-G solvation = -25191.425056 eV Core-core repulsion = 21661.457285 eV Total energy + Delta-G solvation = -3529.967771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33860 -40.37676 -39.72656 -37.49948 -35.49206 -34.23373 -33.39048 -31.79787 -30.01124 -29.44270 -27.73563 -25.51703 -25.38923 -24.49862 -23.28777 -22.90168 -21.45952 -20.90572 -20.49495 -18.88535 -18.25691 -17.60485 -17.09785 -17.03584 -16.33052 -16.18928 -15.89946 -15.69024 -15.45175 -15.02964 -14.79307 -14.63599 -14.52415 -14.03192 -13.68800 -13.55257 -13.33727 -13.19392 -13.00661 -12.94168 -12.81626 -12.69382 -12.60382 -12.35167 -12.21592 -11.88823 -11.84622 -11.66039 -11.59647 -11.44580 -11.22146 -10.85829 -10.76236 -10.02615 -9.65879 -9.42191 -8.89381 -7.86617 -5.18716 0.35870 0.48284 1.44924 1.47857 1.48453 1.53262 2.15722 2.48344 2.66283 3.07064 3.34737 3.41250 3.53137 3.68433 3.81940 3.90826 3.96324 4.05097 4.07940 4.17397 4.19176 4.24846 4.33471 4.51533 4.53572 4.62772 4.67688 4.71933 4.82914 4.83809 4.88544 4.92195 5.01210 5.04519 5.04843 5.08911 5.16993 5.31954 5.32767 5.45492 5.58758 5.59052 5.68911 5.72123 5.73554 5.97315 6.12792 6.55688 6.94182 7.21925 7.64938 8.64444 9.30973 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002910 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.851678 B = 9618.420486 C =10814.127079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.058 4.058 7 C -0.080 4.080 8 H 0.108 0.892 9 C -0.136 4.136 10 C -0.178 4.178 11 H 0.143 0.857 12 C 0.536 3.464 13 O -0.588 6.588 14 N -0.707 5.707 15 C 0.130 3.870 16 C 0.134 3.866 17 H 0.069 0.931 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.630 5.630 21 C -0.208 4.208 22 H 0.089 0.911 23 C -0.072 4.072 24 N -0.956 5.956 25 Si 0.969 3.031 26 H -0.282 1.282 27 H -0.300 1.300 28 H -0.271 1.271 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.409 0.591 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.245 0.755 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.428 13.888 4.671 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.152 4.152 6 C -0.058 4.058 7 C -0.098 4.098 8 H 0.126 0.874 9 C -0.173 4.173 10 C -0.199 4.199 11 H 0.161 0.839 12 C 0.324 3.676 13 O -0.470 6.470 14 N -0.356 5.356 15 C 0.005 3.995 16 C 0.028 3.972 17 H 0.087 0.913 18 C -0.174 4.174 19 C 0.017 3.983 20 N -0.356 5.356 21 C -0.337 4.337 22 H 0.106 0.894 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.798 3.202 26 H -0.208 1.208 27 H -0.226 1.226 28 H -0.197 1.197 29 C -0.147 4.147 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.111 0.889 38 H 0.244 0.756 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.584 13.371 5.206 24.278 hybrid contribution 1.434 0.290 0.223 1.480 sum -18.150 13.661 5.429 23.356 Atomic orbital electron populations 1.20836 0.89609 1.03513 1.03058 1.20212 0.97395 0.92815 0.98922 1.21363 0.94540 0.98148 1.00795 1.21426 0.94645 0.98426 0.99029 1.21272 1.00862 0.91855 1.01191 1.19121 0.93516 0.92748 1.00434 1.20960 0.92124 0.96833 0.99931 0.87434 1.23235 0.95006 1.04529 0.94572 1.22333 1.08594 0.94354 0.94611 0.83944 1.20102 0.78267 0.90117 0.79123 1.90635 1.47694 1.50474 1.58187 1.45886 1.44622 1.10843 1.34217 1.21603 0.98984 0.82414 0.96455 1.22549 0.84658 0.96079 0.93938 0.91328 1.23486 0.96775 0.95290 1.01855 1.22048 0.95213 0.90377 0.90678 1.46009 1.03368 1.48439 1.37775 1.19199 0.89363 1.16122 1.08978 0.89374 1.25568 0.97481 1.01623 1.01823 1.70011 1.07371 1.40734 1.42405 0.85280 0.77162 0.78860 0.78884 1.20817 1.22607 1.19708 1.21033 0.93483 0.98442 1.01732 0.90350 0.90222 0.91433 0.84008 0.83836 0.84709 0.84928 0.88877 0.75559 0.94108 0.90442 0.90338 0.88183 0.95909 0.94601 0.94601 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.09 -1.62 5.88 -19.86 -0.12 -1.73 16 3 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 4 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 5 C -0.13 -2.48 9.30 22.27 0.21 -2.28 16 6 C -0.06 -1.26 5.61 -19.87 -0.11 -1.37 16 7 C -0.08 -1.94 5.55 -11.54 -0.06 -2.01 16 8 H 0.11 3.00 7.67 -2.39 -0.02 2.98 16 9 C -0.14 -3.15 9.57 30.62 0.29 -2.86 16 10 C -0.18 -4.57 5.83 -11.52 -0.07 -4.64 16 11 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 12 C 0.54 17.96 7.61 87.66 0.67 18.63 16 13 O -0.59 -23.77 16.26 -3.05 -0.05 -23.82 16 14 N -0.71 -23.43 5.33 -463.05 -2.47 -25.90 16 15 C 0.13 4.61 5.52 86.38 0.48 5.09 16 16 C 0.13 4.92 4.10 41.78 0.17 5.09 16 17 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 18 C -0.14 -4.68 8.03 30.93 0.25 -4.43 16 19 C 0.14 6.53 7.39 83.17 0.61 7.14 16 20 N -0.63 -30.43 3.65 -713.92 -2.61 -33.04 16 21 C -0.21 -11.09 10.55 84.04 0.89 -10.20 16 22 H 0.09 4.41 7.50 -2.91 -0.02 4.39 16 23 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 24 N -0.96 -57.52 11.51 21.65 0.25 -57.27 16 25 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C -0.13 -2.68 9.39 22.27 0.21 -2.47 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 32 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.14 2.11 6.02 -2.91 -0.02 2.09 16 36 H 0.13 2.36 6.17 -2.38 -0.01 2.35 16 37 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.41 12.73 8.37 -92.71 -0.78 11.95 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 42 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.04 1.89 7.12 -2.38 -0.02 1.87 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -70.48 381.99 2.39 -68.09 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.20 Total: 28.43 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.04 Total: -3.74 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -4.83 Total: -116.21 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.48 2.39 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038801609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.412 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds