Wall clock time and date at job start Tue Mar 31 2020 10:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 119.99935 * 2 1 4 4 C 1.38211 * 119.99954 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00438 * 359.86464 * 4 3 2 6 6 C 1.38219 * 119.99456 * 0.38999 * 5 4 3 7 7 C 1.50696 * 119.99731 * 179.81121 * 6 5 4 8 8 H 1.09001 * 115.56025 * 154.04115 * 7 6 5 9 9 C 1.53072 * 117.49473 * 8.33228 * 7 6 5 10 10 C 1.52999 * 117.50007 * 299.72875 * 7 6 5 11 11 H 1.08997 * 117.49874 * 359.97427 * 10 7 6 12 12 C 1.50710 * 117.49611 * 214.97968 * 10 7 6 13 13 O 1.21280 * 120.00220 * 0.08999 * 12 10 7 14 14 N 1.34773 * 119.99657 * 180.08988 * 12 10 7 15 15 C 1.46494 * 120.00090 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47499 * 179.97438 * 15 14 12 17 17 H 1.09002 * 112.96575 * 55.32989 * 16 15 14 18 18 C 1.53949 * 113.77229 * 187.00989 * 16 15 14 19 19 C 1.53943 * 86.29037 * 138.01742 * 18 16 15 20 20 N 1.47581 * 86.11834 * 336.39301 * 19 18 16 21 21 C 1.36935 * 134.49165 * 204.63877 * 20 19 18 22 22 H 1.08005 * 120.00149 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00297 * 0.02562 * 21 20 19 24 24 N 1.31620 * 119.99969 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46848 * 89.99849 * 25 23 21 27 27 H 1.48497 * 109.46891 * 209.99739 * 25 23 21 28 28 H 1.48499 * 109.47094 * 330.00100 * 25 23 21 29 29 C 1.38211 * 120.00027 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47163 * 269.97014 * 1 2 3 31 31 H 1.08996 * 109.47541 * 29.97534 * 1 2 3 32 32 H 1.09002 * 109.47082 * 149.97642 * 1 2 3 33 33 H 1.08004 * 120.00469 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.99807 * 180.02562 * 4 3 2 35 35 H 1.08000 * 120.00681 * 180.21070 * 5 4 3 36 36 H 1.09009 * 117.51158 * 145.03555 * 9 7 6 37 37 H 1.08999 * 117.49501 * 359.97438 * 9 7 6 38 38 H 0.97003 * 120.00030 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.47695 * 59.99366 * 15 14 12 40 40 H 1.09003 * 109.47107 * 299.99380 * 15 14 12 41 41 H 1.08998 * 113.74235 * 252.36685 * 18 16 15 42 42 H 1.09006 * 113.73937 * 23.56644 * 18 16 15 43 43 H 1.09000 * 113.77201 * 90.69333 * 19 18 16 44 44 H 1.09001 * 113.76827 * 221.98017 * 19 18 16 45 45 H 0.96996 * 120.00210 * 179.97438 * 24 23 21 46 46 H 1.08004 * 120.00393 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1970 -0.0014 7 6 4.3342 -2.5020 -0.0021 8 1 3.8022 -3.3524 0.4245 9 6 5.8503 -2.4427 0.2001 10 6 5.2743 -2.7744 -1.1780 11 1 5.3474 -2.0098 -1.9514 12 6 5.3939 -4.1980 -1.6579 13 8 4.7567 -5.0762 -1.1161 14 7 6.2091 -4.4952 -2.6892 15 6 6.3250 -5.8789 -3.1561 16 6 7.3064 -5.9412 -4.3282 17 1 8.2830 -5.5206 -4.0881 18 6 7.3751 -7.3210 -5.0075 19 6 7.3978 -6.5523 -6.3410 20 7 6.7458 -5.4530 -5.6032 21 6 5.9430 -4.4021 -5.9587 22 1 5.5855 -3.7164 -5.2047 23 6 5.5879 -4.2187 -7.2880 24 7 6.0232 -5.0545 -8.2069 25 14 4.4922 -2.7855 -7.7729 26 1 5.3343 -1.6050 -8.0933 27 1 3.6882 -3.1582 -8.9644 28 1 3.5833 -2.4540 -6.6462 29 6 2.1980 -1.1969 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0010 35 1 5.3517 0.0000 0.0078 36 1 6.3159 -3.2541 0.7596 37 1 6.3022 -1.4597 0.3330 38 1 6.7185 -3.7927 -3.1228 39 1 5.3478 -6.2357 -3.4816 40 1 6.6890 -6.5073 -2.3433 41 1 8.2953 -7.8670 -4.7999 42 1 6.4800 -7.9262 -4.8631 43 1 8.4011 -6.3112 -6.6922 44 1 6.7717 -6.9964 -7.1149 45 1 5.7747 -4.9266 -9.1357 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038801611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:09 Heat of formation + Delta-G solvation = 58.496643 kcal Electronic energy + Delta-G solvation = -25285.135178 eV Core-core repulsion = 21755.782203 eV Total energy + Delta-G solvation = -3529.352975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23990 -39.21538 -38.01247 -36.44313 -34.00976 -32.66788 -32.18827 -30.98072 -28.22724 -27.77803 -27.04050 -24.35543 -23.58784 -23.37402 -22.26264 -21.76037 -20.16511 -19.64887 -19.04051 -17.52886 -16.87753 -16.43004 -15.73700 -15.42830 -15.28306 -15.02001 -14.58020 -14.29501 -14.04416 -13.95109 -13.70137 -13.37415 -13.24033 -13.00540 -12.54809 -12.44456 -12.30563 -12.02666 -11.88090 -11.44185 -11.41489 -11.11680 -11.06656 -11.02661 -10.75017 -10.73073 -10.55196 -10.50137 -10.02288 -9.76349 -9.65416 -9.34968 -8.87131 -8.80509 -8.62997 -8.55824 -6.90323 -5.77281 -3.09770 1.15838 1.25955 2.74839 3.36887 3.40096 3.43463 3.44594 3.58472 3.99290 4.40506 4.45925 4.63490 4.73991 4.75086 4.85274 4.96855 5.00768 5.11799 5.18664 5.26390 5.30797 5.39505 5.40595 5.50540 5.58310 5.61673 5.65388 5.71485 5.87036 5.89427 5.90976 5.96889 6.03018 6.08322 6.30955 6.33689 6.39841 6.44973 6.52496 6.61579 6.71513 6.87600 6.89602 7.23980 7.40150 7.58405 7.90979 7.97662 8.56675 9.03486 9.70368 10.58521 11.39468 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003400 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.427326 B = 8233.724613 C = 9755.638219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.045 4.045 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.145 4.145 10 C -0.174 4.174 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.553 6.553 14 N -0.708 5.708 15 C 0.124 3.876 16 C 0.126 3.874 17 H 0.050 0.950 18 C -0.156 4.156 19 C 0.159 3.841 20 N -0.602 5.602 21 C -0.219 4.219 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.253 0.747 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 8.581 17.589 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.183 4.183 10 C -0.195 4.195 11 H 0.143 0.857 12 C 0.326 3.674 13 O -0.431 6.431 14 N -0.357 5.357 15 C -0.001 4.001 16 C 0.018 3.982 17 H 0.067 0.933 18 C -0.195 4.195 19 C 0.034 3.966 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.077 8.123 17.705 19.721 hybrid contribution -0.210 1.302 -0.803 1.544 sum -3.287 9.425 16.902 19.629 Atomic orbital electron populations 1.20798 0.91185 1.02935 1.02242 1.19908 0.96110 0.93064 0.99422 1.21018 0.94318 0.97422 1.01716 1.21089 0.94286 0.97853 0.99983 1.21055 1.00037 0.91918 1.01359 1.19127 0.93319 0.92985 0.99082 1.21064 0.91786 0.96718 1.00834 0.85596 1.23118 0.95400 1.03472 0.96270 1.22382 1.07024 0.96560 0.93505 0.85710 1.19504 0.79121 0.88848 0.79971 1.90655 1.45649 1.49039 1.57806 1.45878 1.45206 1.11276 1.33310 1.21757 1.01052 0.81535 0.95741 1.22504 0.94208 0.93616 0.87859 0.93322 1.23773 1.00433 0.95515 0.99753 1.22194 0.95452 0.85943 0.93042 1.46066 1.54413 1.30928 1.01474 1.18944 1.20812 1.02709 0.92237 0.90381 1.24746 1.00805 0.99051 0.95689 1.69814 1.48615 1.37620 1.00613 0.86218 0.80180 0.81951 0.78050 1.21653 1.21608 1.20645 1.20903 0.93394 0.97833 1.00631 0.91211 0.91571 0.91367 0.86261 0.86062 0.85858 0.87789 0.87549 0.76173 0.91057 0.92229 0.92807 0.90509 0.95578 0.90832 0.93693 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.09 -0.91 5.88 -104.63 -0.62 -1.52 16 3 C -0.13 -1.26 9.70 -39.59 -0.38 -1.65 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.13 -1.34 9.30 -39.58 -0.37 -1.71 16 6 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 7 C -0.09 -1.06 5.56 -91.74 -0.51 -1.57 16 8 H 0.13 1.70 7.67 -51.93 -0.40 1.30 16 9 C -0.15 -1.54 9.57 -26.69 -0.26 -1.79 16 10 C -0.17 -2.32 5.82 -91.77 -0.53 -2.86 16 11 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 12 C 0.54 9.16 7.61 -10.98 -0.08 9.08 16 13 O -0.55 -11.07 16.26 5.56 0.09 -10.97 16 14 N -0.71 -12.07 5.37 -60.29 -0.32 -12.39 16 15 C 0.12 2.25 5.54 -4.04 -0.02 2.23 16 16 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 17 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.16 -2.85 7.86 -25.81 -0.20 -3.05 16 19 C 0.16 3.64 7.51 -2.98 -0.02 3.62 16 20 N -0.60 -14.67 3.58 -170.74 -0.61 -15.28 16 21 C -0.22 -5.90 10.51 -15.06 -0.16 -6.06 16 22 H 0.08 2.02 7.53 -52.48 -0.40 1.62 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 24 N -0.92 -27.01 11.39 55.49 0.63 -26.37 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.11 -1.30 9.39 -39.58 -0.37 -1.67 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 1.10 6.01 -52.49 -0.32 0.78 16 36 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.11 0.90 6.17 -51.93 -0.32 0.58 16 38 H 0.40 6.53 8.37 -40.82 -0.34 6.19 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -32.39 382.03 -11.21 -43.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.19 Total: 6.89 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -4.54 Total: -8.34 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.30 Total: -54.05 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.39 -11.21 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038801611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.087 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds