Wall clock time and date at job start Tue Mar 31 2020 10:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 119.99935 * 2 1 4 4 C 1.38211 * 119.99954 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00438 * 359.86464 * 4 3 2 6 6 C 1.38219 * 119.99456 * 0.38999 * 5 4 3 7 7 C 1.50696 * 119.99731 * 179.81121 * 6 5 4 8 8 H 1.09001 * 115.56025 * 154.04115 * 7 6 5 9 9 C 1.53072 * 117.49473 * 8.33228 * 7 6 5 10 10 C 1.52999 * 117.50007 * 299.72875 * 7 6 5 11 11 H 1.08997 * 117.49874 * 359.97427 * 10 7 6 12 12 C 1.50710 * 117.49611 * 214.97968 * 10 7 6 13 13 O 1.21280 * 120.00220 * 0.08999 * 12 10 7 14 14 N 1.34773 * 119.99657 * 180.08988 * 12 10 7 15 15 C 1.46494 * 120.00090 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47499 * 179.97438 * 15 14 12 17 17 H 1.09002 * 112.96575 * 55.32989 * 16 15 14 18 18 C 1.53949 * 113.77229 * 187.00989 * 16 15 14 19 19 C 1.53943 * 86.29037 * 138.01742 * 18 16 15 20 20 N 1.47581 * 86.11834 * 336.39301 * 19 18 16 21 21 C 1.36935 * 134.49165 * 204.63877 * 20 19 18 22 22 H 1.08005 * 120.00149 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00297 * 0.02562 * 21 20 19 24 24 N 1.31620 * 119.99969 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46848 * 89.99849 * 25 23 21 27 27 H 1.48497 * 109.46891 * 209.99739 * 25 23 21 28 28 H 1.48499 * 109.47094 * 330.00100 * 25 23 21 29 29 C 1.38211 * 120.00027 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47163 * 269.97014 * 1 2 3 31 31 H 1.08996 * 109.47541 * 29.97534 * 1 2 3 32 32 H 1.09002 * 109.47082 * 149.97642 * 1 2 3 33 33 H 1.08004 * 120.00469 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.99807 * 180.02562 * 4 3 2 35 35 H 1.08000 * 120.00681 * 180.21070 * 5 4 3 36 36 H 1.09009 * 117.51158 * 145.03555 * 9 7 6 37 37 H 1.08999 * 117.49501 * 359.97438 * 9 7 6 38 38 H 0.97003 * 120.00030 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.47695 * 59.99366 * 15 14 12 40 40 H 1.09003 * 109.47107 * 299.99380 * 15 14 12 41 41 H 1.08998 * 113.74235 * 252.36685 * 18 16 15 42 42 H 1.09006 * 113.73937 * 23.56644 * 18 16 15 43 43 H 1.09000 * 113.77201 * 90.69333 * 19 18 16 44 44 H 1.09001 * 113.76827 * 221.98017 * 19 18 16 45 45 H 0.96996 * 120.00210 * 179.97438 * 24 23 21 46 46 H 1.08004 * 120.00393 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1970 -0.0014 7 6 4.3342 -2.5020 -0.0021 8 1 3.8022 -3.3524 0.4245 9 6 5.8503 -2.4427 0.2001 10 6 5.2743 -2.7744 -1.1780 11 1 5.3474 -2.0098 -1.9514 12 6 5.3939 -4.1980 -1.6579 13 8 4.7567 -5.0762 -1.1161 14 7 6.2091 -4.4952 -2.6892 15 6 6.3250 -5.8789 -3.1561 16 6 7.3064 -5.9412 -4.3282 17 1 8.2830 -5.5206 -4.0881 18 6 7.3751 -7.3210 -5.0075 19 6 7.3978 -6.5523 -6.3410 20 7 6.7458 -5.4530 -5.6032 21 6 5.9430 -4.4021 -5.9587 22 1 5.5855 -3.7164 -5.2047 23 6 5.5879 -4.2187 -7.2880 24 7 6.0232 -5.0545 -8.2069 25 14 4.4922 -2.7855 -7.7729 26 1 5.3343 -1.6050 -8.0933 27 1 3.6882 -3.1582 -8.9644 28 1 3.5833 -2.4540 -6.6462 29 6 2.1980 -1.1969 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0010 35 1 5.3517 0.0000 0.0078 36 1 6.3159 -3.2541 0.7596 37 1 6.3022 -1.4597 0.3330 38 1 6.7185 -3.7927 -3.1228 39 1 5.3478 -6.2357 -3.4816 40 1 6.6890 -6.5073 -2.3433 41 1 8.2953 -7.8670 -4.7999 42 1 6.4800 -7.9262 -4.8631 43 1 8.4011 -6.3112 -6.6922 44 1 6.7717 -6.9964 -7.1149 45 1 5.7747 -4.9266 -9.1357 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038801611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:08 Heat of formation + Delta-G solvation = 40.483889 kcal Electronic energy + Delta-G solvation = -25285.916269 eV Core-core repulsion = 21755.782203 eV Total energy + Delta-G solvation = -3530.134066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32475 -40.32589 -39.59144 -37.48981 -35.49545 -34.20839 -33.40803 -31.80671 -29.97383 -29.45848 -27.76568 -25.55583 -25.29726 -24.49782 -23.37575 -22.92561 -21.43592 -20.83291 -20.49089 -18.89942 -18.21806 -17.62002 -17.10788 -17.04445 -16.39406 -16.15151 -15.89339 -15.71370 -15.47180 -14.98574 -14.80440 -14.63638 -14.62065 -14.04957 -13.63986 -13.55618 -13.29986 -13.20133 -13.03465 -12.96433 -12.82088 -12.68660 -12.57678 -12.34632 -12.22500 -11.88408 -11.85857 -11.63332 -11.52100 -11.45161 -11.34702 -10.86515 -10.80378 -10.03018 -9.67177 -9.42668 -8.88606 -7.87442 -5.18759 0.35142 0.46928 1.42031 1.43638 1.49403 1.50991 2.17394 2.46527 2.64489 3.05714 3.31547 3.37733 3.53601 3.68089 3.83527 3.92751 3.99551 4.04889 4.08229 4.17200 4.21666 4.23336 4.34768 4.48864 4.52195 4.61663 4.69680 4.72675 4.79925 4.82361 4.88185 4.92942 4.99575 5.05636 5.06222 5.10021 5.15975 5.29628 5.33568 5.45555 5.57085 5.61343 5.67068 5.70723 5.74700 5.98133 6.11819 6.56022 6.95446 7.22494 7.65220 8.59979 9.29518 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003400 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.427326 B = 8233.724613 C = 9755.638219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.060 4.060 7 C -0.090 4.090 8 H 0.106 0.894 9 C -0.116 4.116 10 C -0.186 4.186 11 H 0.132 0.868 12 C 0.537 3.463 13 O -0.589 6.589 14 N -0.707 5.707 15 C 0.132 3.868 16 C 0.133 3.867 17 H 0.073 0.927 18 C -0.131 4.131 19 C 0.150 3.850 20 N -0.630 5.630 21 C -0.213 4.213 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.964 3.036 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.275 1.275 29 C -0.134 4.134 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.409 0.591 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.024 0.976 44 H 0.038 0.962 45 H 0.245 0.755 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 10.468 19.509 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.060 4.060 7 C -0.108 4.108 8 H 0.124 0.876 9 C -0.153 4.153 10 C -0.207 4.207 11 H 0.150 0.850 12 C 0.325 3.675 13 O -0.470 6.470 14 N -0.356 5.356 15 C 0.007 3.993 16 C 0.027 3.973 17 H 0.090 0.910 18 C -0.170 4.170 19 C 0.025 3.975 20 N -0.356 5.356 21 C -0.342 4.342 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.794 3.206 26 H -0.211 1.211 27 H -0.225 1.225 28 H -0.201 1.201 29 C -0.152 4.152 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.244 0.756 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.153 10.020 19.662 22.173 hybrid contribution -0.491 0.689 -1.320 1.568 sum -2.644 10.709 18.343 21.404 Atomic orbital electron populations 1.20835 0.89843 1.03304 1.03102 1.20208 0.97335 0.92971 0.99066 1.21365 0.94785 0.97983 1.00945 1.21457 0.94498 0.98658 0.98899 1.21300 1.01080 0.91570 1.01014 1.19184 0.93386 0.93221 1.00197 1.20994 0.92984 0.96601 1.00248 0.87556 1.23269 0.93895 1.04947 0.93171 1.22311 1.09375 0.94175 0.94829 0.84975 1.20097 0.78075 0.90077 0.79299 1.90635 1.46935 1.50544 1.58919 1.45877 1.45390 1.10947 1.33366 1.21547 0.99075 0.82638 0.96006 1.22673 0.94747 0.93593 0.86269 0.90963 1.23568 1.02477 0.95165 0.95762 1.22169 0.94329 0.86689 0.94362 1.46415 1.54603 1.30548 1.04073 1.19299 1.19960 1.02688 0.92207 0.89803 1.25476 1.02980 1.01613 0.96117 1.69993 1.50577 1.39433 1.00355 0.85285 0.78601 0.79486 0.77277 1.21071 1.22540 1.20060 1.21052 0.93891 0.98281 1.02025 0.90066 0.90334 0.91850 0.84086 0.83545 0.83968 0.87492 0.84586 0.75557 0.94319 0.90120 0.88662 0.90522 0.95865 0.94382 0.94585 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.04 16 2 C -0.10 -1.94 5.88 -19.87 -0.12 -2.06 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 4 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.50 9.30 22.27 0.21 -2.29 16 6 C -0.06 -1.38 5.61 -19.87 -0.11 -1.49 16 7 C -0.09 -2.17 5.56 -11.52 -0.06 -2.23 16 8 H 0.11 2.97 7.67 -2.39 -0.02 2.95 16 9 C -0.12 -2.18 9.57 30.62 0.29 -1.89 16 10 C -0.19 -4.74 5.82 -11.54 -0.07 -4.81 16 11 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 12 C 0.54 17.92 7.61 87.66 0.67 18.58 16 13 O -0.59 -23.75 16.26 -3.03 -0.05 -23.80 16 14 N -0.71 -23.30 5.37 -463.06 -2.49 -25.78 16 15 C 0.13 4.65 5.54 86.38 0.48 5.13 16 16 C 0.13 4.85 4.33 45.09 0.20 5.05 16 17 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 18 C -0.13 -4.53 7.86 31.25 0.25 -4.28 16 19 C 0.15 6.89 7.51 86.48 0.65 7.54 16 20 N -0.63 -30.50 3.58 -694.11 -2.48 -32.98 16 21 C -0.21 -11.46 10.51 84.03 0.88 -10.58 16 22 H 0.08 4.30 7.53 -2.91 -0.02 4.27 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.95 -57.55 11.39 21.65 0.25 -57.31 16 25 Si 0.96 46.18 29.55 68.60 2.03 48.20 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 29 C -0.13 -3.19 9.39 22.27 0.21 -2.98 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.14 2.02 6.01 -2.91 -0.02 2.01 16 36 H 0.11 1.98 8.14 -2.38 -0.02 1.97 16 37 H 0.14 1.75 6.17 -2.39 -0.01 1.74 16 38 H 0.41 12.60 8.37 -92.71 -0.78 11.82 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.08 2.67 8.10 -2.38 -0.02 2.65 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 2.00 7.16 -2.39 -0.02 1.99 16 45 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 46 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.78 382.03 2.55 -69.24 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.20 Total: 27.15 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.09 Total: -4.72 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.72 Total: -116.07 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.78 2.55 -69.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038801611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.720 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds