Wall clock time and date at job start Tue Mar 31 2020 10:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37978 * 120.07451 * 2 1 4 4 C 1.38329 * 120.14696 * 180.02562 * 3 2 1 5 5 C 1.38389 * 120.29195 * 359.97438 * 4 3 2 6 6 C 1.37932 * 120.14465 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.07145 * 180.02562 * 2 1 3 8 8 C 1.47843 * 120.14565 * 359.97438 * 7 2 1 9 9 O 1.21554 * 119.99883 * 48.41110 * 8 7 2 10 10 N 1.34777 * 119.99897 * 228.41333 * 8 7 2 11 11 C 1.46944 * 120.44266 * 5.04010 * 10 8 7 12 12 C 1.54065 * 108.30017 * 125.72288 * 11 10 8 13 13 H 1.08991 * 110.52307 * 172.87053 * 12 11 10 14 14 C 1.53372 * 108.83233 * 294.50838 * 12 11 10 15 15 C 1.53009 * 109.25330 * 60.25961 * 14 12 11 16 16 C 1.53006 * 109.80250 * 60.57615 * 15 14 12 17 17 C 1.53375 * 109.27379 * 299.44424 * 16 15 14 18 18 H 1.09001 * 110.59056 * 178.10099 * 17 16 15 19 19 C 1.46947 * 120.44000 * 185.31272 * 10 8 7 20 20 N 1.47564 * 107.98753 * 56.33697 * 17 16 15 21 21 C 1.36939 * 121.61365 * 122.27802 * 20 17 16 22 22 H 1.07998 * 119.99624 * 326.56813 * 21 20 17 23 23 C 1.38815 * 119.99690 * 146.56335 * 21 20 17 24 24 N 1.31616 * 120.00384 * 348.40165 * 23 21 20 25 25 Si 1.86805 * 119.99415 * 168.40134 * 23 21 20 26 26 H 1.48495 * 109.47527 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46714 * 120.00241 * 25 23 21 28 28 H 1.48501 * 109.46729 * 239.99555 * 25 23 21 29 29 H 1.08999 * 109.47068 * 96.38336 * 1 2 3 30 30 H 1.08995 * 109.47087 * 216.38784 * 1 2 3 31 31 H 1.09002 * 109.47223 * 336.39093 * 1 2 3 32 32 H 1.08004 * 119.92860 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.85885 * 179.97438 * 4 3 2 34 34 H 1.07995 * 119.92639 * 179.70034 * 5 4 3 35 35 H 1.07998 * 120.07432 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.62046 * 245.48790 * 11 10 8 37 37 H 1.09001 * 109.62210 * 6.04983 * 11 10 8 38 38 H 1.08994 * 109.50832 * 300.32196 * 14 12 11 39 39 H 1.09003 * 109.50616 * 180.19150 * 14 12 11 40 40 H 1.09000 * 109.41522 * 300.47385 * 15 14 12 41 41 H 1.09001 * 109.36224 * 180.64324 * 15 14 12 42 42 H 1.08994 * 109.50675 * 179.50172 * 16 15 14 43 43 H 1.08997 * 109.53545 * 59.39708 * 16 15 14 44 44 H 1.09004 * 109.62482 * 353.96445 * 19 10 8 45 45 H 1.08997 * 109.62463 * 114.54191 * 19 10 8 46 46 H 0.97004 * 120.00198 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0017 -0.0005 6 6 3.6023 -1.1989 0.0005 7 6 2.2063 -1.2077 -0.0005 8 6 1.4720 -2.4909 -0.0005 9 8 0.5633 -2.6711 -0.7876 10 7 1.8100 -3.4607 0.8721 11 6 2.8310 -3.2148 1.8999 12 6 2.2243 -3.5526 3.2751 13 1 2.9874 -3.5039 4.0518 14 6 1.0890 -2.5649 3.5715 15 6 0.0148 -2.6914 2.4892 16 6 -0.5517 -4.1127 2.4849 17 6 0.5771 -5.1067 2.1849 18 1 0.2032 -6.1303 2.2097 19 6 1.1667 -4.7802 0.8047 20 7 1.6404 -4.9051 3.1880 21 6 2.0649 -5.9237 3.9988 22 1 1.3657 -6.6773 4.3299 23 6 3.3937 -5.9876 4.3950 24 7 4.2902 -5.2151 3.8188 25 14 3.9096 -7.1700 5.7461 26 1 2.7222 -7.9209 6.2268 27 1 4.9149 -8.1236 5.2119 28 1 4.5023 -6.4056 6.8729 29 1 -0.3633 -0.1143 -1.0213 30 1 -0.3633 -0.8272 0.6096 31 1 -0.3634 0.9417 0.4116 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1331 -0.0010 34 1 5.3612 0.0100 -0.0059 35 1 4.1494 -2.1301 0.0001 36 1 3.6981 -3.8484 1.7134 37 1 3.1285 -2.1664 1.8768 38 1 1.4828 -1.5486 3.5765 39 1 0.6537 -2.7921 4.5447 40 1 0.4539 -2.4733 1.5157 41 1 -0.7876 -1.9821 2.6919 42 1 -1.3223 -4.1949 1.7184 43 1 -0.9834 -4.3360 3.4605 44 1 0.3697 -4.7614 0.0612 45 1 1.9057 -5.5344 0.5345 46 1 5.2189 -5.2600 4.0954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039503391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:41 Heat of formation + Delta-G solvation = 39.206094 kcal Electronic energy + Delta-G solvation = -28481.758710 eV Core-core repulsion = 24951.569234 eV Total energy + Delta-G solvation = -3530.189476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89494 -38.89089 -37.33135 -33.93456 -33.06586 -32.58227 -32.01691 -30.80123 -30.22171 -27.22027 -26.62589 -25.55043 -23.99490 -22.87747 -21.80349 -21.50562 -20.94797 -19.45103 -18.29009 -17.45988 -16.17007 -15.98659 -15.55410 -15.21229 -14.77197 -14.50403 -14.22362 -13.91025 -13.60992 -13.46994 -13.28141 -13.00718 -12.91558 -12.79434 -12.50677 -12.31909 -11.98295 -11.92911 -11.87233 -11.43337 -11.23911 -11.02763 -11.01397 -10.90188 -10.75212 -10.36195 -10.13533 -10.09656 -10.05211 -9.58237 -9.50560 -9.21770 -8.79052 -8.61844 -8.59883 -7.75863 -6.54976 -5.89505 -3.37000 1.13377 1.42841 3.07046 3.31373 3.40111 3.41565 3.52966 3.89288 4.40961 4.81249 4.89271 4.94428 5.07313 5.20686 5.29191 5.33421 5.51274 5.68795 5.71044 5.73919 5.77766 5.82162 5.85684 5.88608 5.96025 6.02843 6.07457 6.25286 6.27644 6.38273 6.40465 6.43509 6.47889 6.50483 6.55855 6.61064 6.64429 6.69785 6.76718 6.88656 6.96619 7.06541 7.12423 7.25907 7.50521 7.72840 8.01176 8.36637 8.60664 9.10622 9.70021 10.35528 11.18912 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.005191 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.052261 B = 5392.277572 C = 6129.658302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.037 4.037 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.121 4.121 8 C 0.555 3.445 9 O -0.553 6.553 10 N -0.582 5.582 11 C 0.096 3.904 12 C 0.183 3.817 13 H 0.109 0.891 14 C -0.132 4.132 15 C -0.140 4.140 16 C -0.121 4.121 17 C 0.154 3.846 18 H 0.078 0.922 19 C 0.100 3.900 20 N -0.578 5.578 21 C -0.249 4.249 22 H 0.064 0.936 23 C 0.009 3.991 24 N -0.902 5.902 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.031 0.969 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 10.841 -5.775 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.149 4.149 4 C -0.120 4.120 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.124 4.124 8 C 0.344 3.656 9 O -0.434 6.434 10 N -0.313 5.313 11 C -0.027 4.027 12 C 0.076 3.924 13 H 0.127 0.873 14 C -0.171 4.171 15 C -0.178 4.178 16 C -0.161 4.161 17 C 0.046 3.954 18 H 0.096 0.904 19 C -0.024 4.024 20 N -0.299 5.299 21 C -0.378 4.378 22 H 0.082 0.918 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.467 10.672 -6.103 12.539 hybrid contribution 0.559 -0.579 0.829 1.155 sum -1.908 10.093 -5.274 11.546 Atomic orbital electron populations 1.20891 0.90676 1.02541 1.03288 1.19903 0.96342 0.91639 0.95926 1.20948 0.94275 0.97171 1.02535 1.21240 0.94186 0.98084 0.98458 1.21055 1.00061 0.92136 1.01855 1.21376 0.92835 0.98943 0.96564 1.19873 0.93987 0.93417 1.05146 1.18094 0.83135 0.83722 0.80605 1.90731 1.30678 1.81160 1.40821 1.48225 1.39792 1.12327 1.30933 1.22749 0.90818 1.00167 0.88943 1.21061 0.93252 0.83297 0.94819 0.87300 1.22113 0.98198 0.98502 0.98336 1.22141 0.97642 0.96158 1.01843 1.21914 0.97725 0.96201 1.00221 1.21241 0.89523 0.96904 0.87757 0.90393 1.22258 0.97446 0.82928 0.99741 1.44291 1.41137 1.06040 1.38476 1.19169 0.91619 1.04824 1.22200 0.91792 1.25138 0.95596 0.98590 0.99669 1.69893 1.01335 1.41410 1.41995 0.86196 0.78276 0.80522 0.81579 1.20312 1.21701 1.21615 0.90407 0.90778 0.91925 0.85784 0.85964 0.85622 0.85199 0.89318 0.91463 0.93902 0.92850 0.89387 0.95043 0.93453 0.92764 0.90379 0.91639 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.83 36.01 0.32 -1.30 16 2 C -0.04 -0.54 5.91 -104.22 -0.62 -1.16 16 3 C -0.13 -1.58 9.66 -39.64 -0.38 -1.96 16 4 C -0.10 -1.13 10.04 -39.49 -0.40 -1.53 16 5 C -0.13 -1.62 10.03 -39.64 -0.40 -2.02 16 6 C -0.08 -1.15 7.51 -39.19 -0.29 -1.45 16 7 C -0.12 -1.98 4.84 -104.97 -0.51 -2.49 16 8 C 0.55 10.37 3.91 -12.33 -0.05 10.32 16 9 O -0.55 -11.43 15.12 5.32 0.08 -11.35 16 10 N -0.58 -11.14 1.64 -173.06 -0.28 -11.43 16 11 C 0.10 1.91 4.67 -3.24 -0.02 1.89 16 12 C 0.18 3.98 2.60 -66.60 -0.17 3.81 16 13 H 0.11 2.68 6.22 -51.93 -0.32 2.36 16 14 C -0.13 -2.58 5.59 -26.53 -0.15 -2.73 16 15 C -0.14 -2.60 5.02 -26.72 -0.13 -2.74 16 16 C -0.12 -2.28 5.58 -26.53 -0.15 -2.42 16 17 C 0.15 3.12 3.61 -66.85 -0.24 2.88 16 18 H 0.08 1.55 8.03 -51.93 -0.42 1.14 16 19 C 0.10 1.96 5.89 -3.49 -0.02 1.94 16 20 N -0.58 -13.37 2.51 -155.15 -0.39 -13.76 16 21 C -0.25 -6.35 9.71 -15.06 -0.15 -6.50 16 22 H 0.06 1.65 7.86 -52.49 -0.41 1.23 16 23 C 0.01 0.23 5.09 -17.43 -0.09 0.14 16 24 N -0.90 -23.54 10.53 55.49 0.58 -22.96 16 25 Si 0.90 20.63 29.57 -169.99 -5.03 15.60 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.16 5.71 -51.93 -0.30 0.87 16 31 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.91 7.30 -52.49 -0.38 1.52 16 36 H 0.09 1.97 7.50 -51.93 -0.39 1.58 16 37 H 0.07 1.23 5.04 -51.93 -0.26 0.96 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.66 1.60 -52.42 -0.08 1.57 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.48 6.98 -51.93 -0.36 1.12 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -27.86 342.93 -10.02 -37.88 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.71 Total: 6.13 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.44 Total: -5.29 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.09 Total: -48.14 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.86 -10.02 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039503391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.082 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds