Wall clock time and date at job start Tue Mar 31 2020 10:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37978 * 120.07451 * 2 1 4 4 C 1.38329 * 120.14696 * 180.02562 * 3 2 1 5 5 C 1.38389 * 120.29195 * 359.97438 * 4 3 2 6 6 C 1.37932 * 120.14465 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.07145 * 180.02562 * 2 1 3 8 8 C 1.47843 * 120.14565 * 359.97438 * 7 2 1 9 9 O 1.21554 * 119.99883 * 48.41110 * 8 7 2 10 10 N 1.34777 * 119.99897 * 228.41333 * 8 7 2 11 11 C 1.46944 * 120.44266 * 5.04010 * 10 8 7 12 12 C 1.54065 * 108.30017 * 125.72288 * 11 10 8 13 13 H 1.08991 * 110.52307 * 172.87053 * 12 11 10 14 14 C 1.53372 * 108.83233 * 294.50838 * 12 11 10 15 15 C 1.53009 * 109.25330 * 60.25961 * 14 12 11 16 16 C 1.53006 * 109.80250 * 60.57615 * 15 14 12 17 17 C 1.53375 * 109.27379 * 299.44424 * 16 15 14 18 18 H 1.09001 * 110.59056 * 178.10099 * 17 16 15 19 19 C 1.46947 * 120.44000 * 185.31272 * 10 8 7 20 20 N 1.47564 * 107.98753 * 56.33697 * 17 16 15 21 21 C 1.36939 * 121.61365 * 122.27802 * 20 17 16 22 22 H 1.07998 * 119.99624 * 326.56813 * 21 20 17 23 23 C 1.38815 * 119.99690 * 146.56335 * 21 20 17 24 24 N 1.31616 * 120.00384 * 348.40165 * 23 21 20 25 25 Si 1.86805 * 119.99415 * 168.40134 * 23 21 20 26 26 H 1.48495 * 109.47527 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46714 * 120.00241 * 25 23 21 28 28 H 1.48501 * 109.46729 * 239.99555 * 25 23 21 29 29 H 1.08999 * 109.47068 * 96.38336 * 1 2 3 30 30 H 1.08995 * 109.47087 * 216.38784 * 1 2 3 31 31 H 1.09002 * 109.47223 * 336.39093 * 1 2 3 32 32 H 1.08004 * 119.92860 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.85885 * 179.97438 * 4 3 2 34 34 H 1.07995 * 119.92639 * 179.70034 * 5 4 3 35 35 H 1.07998 * 120.07432 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.62046 * 245.48790 * 11 10 8 37 37 H 1.09001 * 109.62210 * 6.04983 * 11 10 8 38 38 H 1.08994 * 109.50832 * 300.32196 * 14 12 11 39 39 H 1.09003 * 109.50616 * 180.19150 * 14 12 11 40 40 H 1.09000 * 109.41522 * 300.47385 * 15 14 12 41 41 H 1.09001 * 109.36224 * 180.64324 * 15 14 12 42 42 H 1.08994 * 109.50675 * 179.50172 * 16 15 14 43 43 H 1.08997 * 109.53545 * 59.39708 * 16 15 14 44 44 H 1.09004 * 109.62482 * 353.96445 * 19 10 8 45 45 H 1.08997 * 109.62463 * 114.54191 * 19 10 8 46 46 H 0.97004 * 120.00198 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0017 -0.0005 6 6 3.6023 -1.1989 0.0005 7 6 2.2063 -1.2077 -0.0005 8 6 1.4720 -2.4909 -0.0005 9 8 0.5633 -2.6711 -0.7876 10 7 1.8100 -3.4607 0.8721 11 6 2.8310 -3.2148 1.8999 12 6 2.2243 -3.5526 3.2751 13 1 2.9874 -3.5039 4.0518 14 6 1.0890 -2.5649 3.5715 15 6 0.0148 -2.6914 2.4892 16 6 -0.5517 -4.1127 2.4849 17 6 0.5771 -5.1067 2.1849 18 1 0.2032 -6.1303 2.2097 19 6 1.1667 -4.7802 0.8047 20 7 1.6404 -4.9051 3.1880 21 6 2.0649 -5.9237 3.9988 22 1 1.3657 -6.6773 4.3299 23 6 3.3937 -5.9876 4.3950 24 7 4.2902 -5.2151 3.8188 25 14 3.9096 -7.1700 5.7461 26 1 2.7222 -7.9209 6.2268 27 1 4.9149 -8.1236 5.2119 28 1 4.5023 -6.4056 6.8729 29 1 -0.3633 -0.1143 -1.0213 30 1 -0.3633 -0.8272 0.6096 31 1 -0.3634 0.9417 0.4116 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1331 -0.0010 34 1 5.3612 0.0100 -0.0059 35 1 4.1494 -2.1301 0.0001 36 1 3.6981 -3.8484 1.7134 37 1 3.1285 -2.1664 1.8768 38 1 1.4828 -1.5486 3.5765 39 1 0.6537 -2.7921 4.5447 40 1 0.4539 -2.4733 1.5157 41 1 -0.7876 -1.9821 2.6919 42 1 -1.3223 -4.1949 1.7184 43 1 -0.9834 -4.3360 3.4605 44 1 0.3697 -4.7614 0.0612 45 1 1.9057 -5.5344 0.5345 46 1 5.2189 -5.2600 4.0954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039503391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:40 Heat of formation + Delta-G solvation = 26.787684 kcal Electronic energy + Delta-G solvation = -28482.297212 eV Core-core repulsion = 24951.569234 eV Total energy + Delta-G solvation = -3530.727978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35403 -40.12420 -38.78865 -35.57903 -34.75264 -33.74160 -33.50226 -32.05832 -31.93752 -28.67142 -27.90635 -27.11048 -25.62409 -24.25368 -23.17979 -23.03654 -22.29038 -20.81517 -20.00092 -18.92016 -17.72649 -17.35187 -16.76342 -16.69298 -16.41503 -16.00704 -15.57747 -15.42464 -15.13655 -14.80814 -14.60795 -14.45944 -14.32354 -14.08684 -14.06738 -13.83250 -13.52598 -13.17391 -13.10118 -12.88921 -12.79586 -12.64975 -12.46240 -12.37430 -12.12848 -11.99932 -11.90738 -11.70782 -11.67918 -11.16044 -11.15504 -10.77679 -10.55936 -9.80296 -9.64177 -9.39893 -8.37069 -7.83996 -5.33895 0.06181 0.43680 1.47424 1.51459 1.59367 1.69489 2.07553 2.52641 2.82833 3.32115 3.48685 3.53686 3.91702 3.92523 4.09366 4.16229 4.18170 4.22343 4.25167 4.40724 4.42218 4.48801 4.54403 4.64210 4.73193 4.75515 4.78159 4.79713 4.83012 4.88030 4.97920 5.02730 5.03793 5.11826 5.19861 5.27206 5.30474 5.42793 5.46543 5.48016 5.54855 5.58480 5.60318 5.69978 5.83254 6.02707 6.42828 6.51044 7.12018 7.18590 7.81561 8.44916 9.21180 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.005191 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.052261 B = 5392.277572 C = 6129.658302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.132 4.132 6 C -0.095 4.095 7 C -0.151 4.151 8 C 0.559 3.441 9 O -0.577 6.577 10 N -0.584 5.584 11 C 0.117 3.883 12 C 0.181 3.819 13 H 0.078 0.922 14 C -0.123 4.123 15 C -0.138 4.138 16 C -0.115 4.115 17 C 0.149 3.851 18 H 0.077 0.923 19 C 0.106 3.894 20 N -0.591 5.591 21 C -0.261 4.261 22 H 0.058 0.942 23 C -0.032 4.032 24 N -0.918 5.918 25 Si 0.961 3.039 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.291 1.291 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 13.498 -5.992 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.150 4.150 6 C -0.113 4.113 7 C -0.154 4.154 8 C 0.350 3.650 9 O -0.459 6.459 10 N -0.315 5.315 11 C -0.007 4.007 12 C 0.073 3.927 13 H 0.096 0.904 14 C -0.162 4.162 15 C -0.176 4.176 16 C -0.154 4.154 17 C 0.042 3.958 18 H 0.095 0.905 19 C -0.018 4.018 20 N -0.313 5.313 21 C -0.392 4.392 22 H 0.075 0.925 23 C -0.229 4.229 24 N -0.563 5.563 25 Si 0.790 3.210 26 H -0.199 1.199 27 H -0.221 1.221 28 H -0.218 1.218 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.522 13.337 -6.328 14.976 hybrid contribution 0.589 -1.344 0.842 1.692 sum -1.933 11.993 -5.486 13.329 Atomic orbital electron populations 1.20866 0.90462 1.03105 1.02663 1.20122 0.96762 0.91911 0.96373 1.21338 0.94893 0.97319 1.00901 1.21712 0.94079 0.99114 0.95846 1.21385 1.01400 0.91558 1.00630 1.21395 0.92345 0.99791 0.97819 1.19803 0.94599 0.92668 1.08334 1.18515 0.82658 0.84278 0.79509 1.90701 1.31898 1.81758 1.41509 1.48188 1.39746 1.12367 1.31219 1.22389 0.89699 1.00431 0.88133 1.20986 0.93344 0.83451 0.94873 0.90395 1.21983 0.97562 0.98531 0.98112 1.22130 0.97751 0.96280 1.01450 1.21830 0.97265 0.95841 1.00426 1.21350 0.89425 0.97564 0.87466 0.90499 1.22098 0.97146 0.83174 0.99418 1.44429 1.41759 1.06165 1.38979 1.19338 0.91748 1.05320 1.22758 0.92478 1.25714 0.95676 1.00085 1.01432 1.70022 1.01180 1.42307 1.42745 0.85313 0.77613 0.78731 0.79294 1.19947 1.22115 1.21791 0.91015 0.93119 0.89015 0.82606 0.82153 0.83227 0.86437 0.92276 0.89691 0.92327 0.93812 0.89326 0.93465 0.91985 0.93150 0.89709 0.93236 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 8.83 71.24 0.63 -2.29 16 2 C -0.05 -1.36 5.91 -19.61 -0.12 -1.48 16 3 C -0.13 -2.52 9.66 22.23 0.21 -2.31 16 4 C -0.09 -1.60 10.04 22.33 0.22 -1.37 16 5 C -0.13 -2.82 10.03 22.23 0.22 -2.60 16 6 C -0.09 -2.69 7.51 22.53 0.17 -2.52 16 7 C -0.15 -4.80 4.84 -20.09 -0.10 -4.89 16 8 C 0.56 20.92 3.91 86.79 0.34 21.26 16 9 O -0.58 -23.90 15.12 -3.89 -0.06 -23.96 16 10 N -0.58 -22.76 1.64 -819.72 -1.34 -24.10 16 11 C 0.12 4.74 4.67 86.66 0.41 5.15 16 12 C 0.18 8.00 2.60 45.27 0.12 8.12 16 13 H 0.08 3.96 6.22 -2.39 -0.01 3.94 16 14 C -0.12 -4.73 5.59 30.72 0.17 -4.56 16 15 C -0.14 -5.02 5.02 30.60 0.15 -4.86 16 16 C -0.11 -4.24 5.58 30.72 0.17 -4.07 16 17 C 0.15 6.17 3.61 45.11 0.16 6.33 16 18 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16 19 C 0.11 4.26 5.89 86.49 0.51 4.77 16 20 N -0.59 -28.02 2.51 -644.79 -1.62 -29.63 16 21 C -0.26 -13.69 9.71 84.03 0.82 -12.87 16 22 H 0.06 3.01 7.86 -2.91 -0.02 2.98 16 23 C -0.03 -1.67 5.09 84.86 0.43 -1.24 16 24 N -0.92 -49.19 10.53 21.65 0.23 -48.97 16 25 Si 0.96 43.14 29.57 68.60 2.03 45.17 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.52 5.71 -2.39 -0.01 1.51 16 31 H 0.09 1.72 8.04 -2.39 -0.02 1.70 16 32 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.12 3.52 7.30 -2.91 -0.02 3.50 16 36 H 0.06 2.75 7.50 -2.39 -0.02 2.73 16 37 H 0.09 3.12 5.04 -2.39 -0.01 3.11 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 3.28 1.60 -3.36 -0.01 3.27 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 3.27 6.98 -2.38 -0.02 3.26 16 45 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 Total: -1.00 -61.15 342.93 4.75 -56.41 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.98 Total: 24.52 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.53 Total: 0.57 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -2.73 Total: -102.70 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -61.15 4.75 -56.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039503391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.194 kcal (2) G-P(sol) polarization free energy of solvation -61.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds