Wall clock time and date at job start Tue Mar 31 2020 10:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.93088 * 2 1 4 4 C 1.38337 * 120.29436 * 180.28103 * 3 2 1 5 5 C 1.37976 * 120.14374 * 359.72594 * 4 3 2 6 6 C 1.39560 * 119.85195 * 359.97438 * 5 4 3 7 7 C 1.47847 * 120.14260 * 179.97438 * 6 5 4 8 8 O 1.21552 * 120.00025 * 219.47208 * 7 6 5 9 9 N 1.34774 * 119.99727 * 39.47291 * 7 6 5 10 10 C 1.46946 * 120.44453 * 5.41840 * 9 7 6 11 11 C 1.54066 * 108.29029 * 125.71399 * 10 9 7 12 12 H 1.09004 * 110.52260 * 172.27924 * 11 10 9 13 13 C 1.53368 * 108.83266 * 294.52291 * 11 10 9 14 14 C 1.53011 * 109.25539 * 60.26551 * 13 11 10 15 15 C 1.53009 * 109.79491 * 60.58075 * 14 13 11 16 16 C 1.53364 * 109.26914 * 299.43243 * 15 14 13 17 17 H 1.09003 * 111.08560 * 177.80919 * 16 15 14 18 18 C 1.46956 * 120.44170 * 185.69492 * 9 7 6 19 19 N 1.47568 * 107.98815 * 56.35216 * 16 15 14 20 20 C 1.36932 * 121.61358 * 122.29747 * 19 16 15 21 21 H 1.08002 * 119.99930 * 34.07397 * 20 19 16 22 22 C 1.38809 * 120.00238 * 214.08114 * 20 19 16 23 23 N 1.31628 * 119.99833 * 18.43673 * 22 20 19 24 24 Si 1.86798 * 120.00479 * 198.44077 * 22 20 19 25 25 H 1.48500 * 109.46888 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47358 * 119.99262 * 24 22 20 27 27 H 1.48502 * 109.47181 * 240.00168 * 24 22 20 28 28 C 1.37936 * 119.92741 * 179.72360 * 2 1 3 29 29 H 1.09007 * 109.47130 * 270.27382 * 1 2 3 30 30 H 1.09004 * 109.47215 * 30.27245 * 1 2 3 31 31 H 1.08997 * 109.47459 * 150.27732 * 1 2 3 32 32 H 1.08008 * 119.85000 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.92640 * 179.70514 * 4 3 2 34 34 H 1.08000 * 120.07397 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.62283 * 245.47209 * 10 9 7 36 36 H 1.08997 * 109.62550 * 6.04097 * 10 9 7 37 37 H 1.09000 * 109.51452 * 180.20398 * 13 11 10 38 38 H 1.09007 * 109.50752 * 300.33792 * 13 11 10 39 39 H 1.09000 * 109.41970 * 180.68272 * 14 13 11 40 40 H 1.08999 * 109.41926 * 300.54833 * 14 13 11 41 41 H 1.09002 * 109.50613 * 179.49028 * 15 14 13 42 42 H 1.09003 * 109.50471 * 59.37209 * 15 14 13 43 43 H 1.09003 * 109.62580 * 353.96632 * 18 9 7 44 44 H 1.08998 * 109.62613 * 114.34836 * 18 9 7 45 45 H 0.97000 * 119.99833 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.07088 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0059 5 6 4.2812 0.0193 -0.0060 6 6 3.5910 -1.1937 0.0002 7 6 4.3351 -2.4712 -0.0005 8 8 3.9355 -3.4069 -0.6655 9 7 5.4565 -2.5983 0.7362 10 6 5.8836 -1.5168 1.6347 11 6 6.0688 -2.1057 3.0463 12 1 6.5154 -1.3677 3.7127 13 6 4.7047 -2.5698 3.5719 14 6 4.1415 -3.6416 2.6364 15 6 5.0907 -4.8408 2.5913 16 6 6.4564 -4.3858 2.0623 17 1 7.1686 -5.2109 2.0542 18 6 6.2716 -3.8178 0.6472 19 7 6.9387 -3.2918 2.9272 20 6 8.1358 -3.3730 3.5871 21 1 8.9687 -3.8894 3.1331 22 6 8.2788 -2.7918 4.8395 23 7 7.2130 -2.4884 5.5499 24 14 9.9838 -2.4401 5.5169 25 1 11.0069 -2.8722 4.5310 26 1 10.1248 -0.9839 5.7711 27 1 10.1753 -3.1853 6.7870 28 6 2.1951 -1.1954 0.0058 29 1 -0.3634 0.0049 1.0277 30 1 -0.3634 0.8876 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6538 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0106 34 1 5.3612 0.0275 -0.0102 35 1 6.8269 -1.0994 1.2825 36 1 5.1215 -0.7380 1.6583 37 1 4.8224 -2.9855 4.5726 38 1 4.0207 -1.7218 3.6075 39 1 3.1664 -3.9647 3.0008 40 1 4.0345 -3.2275 1.6338 41 1 4.6807 -5.6049 1.9309 42 1 5.2072 -5.2506 3.5946 43 1 5.7647 -4.5522 0.0212 44 1 7.2436 -3.5778 0.2161 45 1 7.3130 -2.0820 6.4249 46 1 1.6551 -2.1307 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039504643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:45 Heat of formation + Delta-G solvation = 41.940377 kcal Electronic energy + Delta-G solvation = -27986.458529 eV Core-core repulsion = 24456.387621 eV Total energy + Delta-G solvation = -3530.070908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91540 -38.98846 -37.45488 -34.14572 -33.13617 -32.50167 -31.85890 -30.94846 -30.34519 -27.18071 -26.86286 -25.50985 -24.17381 -22.97199 -21.81520 -21.40156 -21.10886 -19.43449 -18.31748 -17.29772 -16.38749 -16.12235 -15.79055 -15.15413 -14.73821 -14.60093 -14.22510 -13.92636 -13.82709 -13.55792 -13.29718 -13.18900 -13.06790 -12.82868 -12.44248 -12.31534 -12.09731 -12.04600 -11.78222 -11.53961 -11.27969 -11.23674 -11.10227 -10.87671 -10.74283 -10.28684 -10.15482 -10.08236 -9.96731 -9.66731 -9.40104 -9.26143 -8.92978 -8.63353 -8.52488 -7.86403 -6.56282 -5.86785 -3.34324 1.01070 1.33604 2.98781 3.31501 3.37898 3.41154 3.43202 3.82854 4.42171 4.67617 4.74443 4.83677 5.04581 5.17775 5.20888 5.28362 5.34785 5.48578 5.52799 5.66971 5.74456 5.76063 5.81054 5.89398 5.89555 5.97937 6.00075 6.03422 6.15725 6.25516 6.34448 6.36596 6.40119 6.46519 6.49822 6.53774 6.66284 6.72909 6.87652 6.91518 7.06387 7.10283 7.14253 7.37480 7.57552 7.75322 7.87616 8.37936 8.49080 9.10553 9.71526 10.38494 11.19751 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004552 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.279245 B = 6150.005647 C = 6661.528278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.104 4.104 4 C -0.124 4.124 5 C -0.092 4.092 6 C -0.116 4.116 7 C 0.557 3.443 8 O -0.552 6.552 9 N -0.581 5.581 10 C 0.074 3.926 11 C 0.184 3.816 12 H 0.102 0.898 13 C -0.114 4.114 14 C -0.137 4.137 15 C -0.120 4.120 16 C 0.152 3.848 17 H 0.078 0.922 18 C 0.101 3.899 19 N -0.577 5.577 20 C -0.258 4.258 21 H 0.064 0.936 22 C 0.013 3.987 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.253 0.747 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 6.889 -9.342 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.119 4.119 7 C 0.347 3.653 8 O -0.432 6.432 9 N -0.313 5.313 10 C -0.049 4.049 11 C 0.076 3.924 12 H 0.120 0.880 13 C -0.153 4.153 14 C -0.175 4.175 15 C -0.159 4.159 16 C 0.044 3.956 17 H 0.096 0.904 18 C -0.023 4.023 19 N -0.298 5.298 20 C -0.387 4.387 21 H 0.082 0.918 22 C -0.187 4.187 23 N -0.533 5.533 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.217 1.217 28 C -0.087 4.087 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.341 6.447 -9.495 14.798 hybrid contribution 0.899 0.250 0.704 1.169 sum -8.442 6.698 -8.792 13.907 Atomic orbital electron populations 1.20782 0.90915 1.02769 1.02478 1.19841 0.96252 0.92835 1.00700 1.21163 0.94302 0.97444 0.99289 1.21070 0.94209 0.97928 1.00986 1.21465 1.00448 0.91520 0.97631 1.19970 0.94280 0.93515 1.04170 1.18097 0.80766 0.87222 0.79252 1.90744 1.67918 1.40394 1.44125 1.48056 1.23569 1.18896 1.40750 1.23146 0.99223 0.89219 0.93360 1.21044 0.90317 0.90535 0.90468 0.88050 1.21820 0.96366 0.96634 1.00518 1.22082 0.96691 0.97070 1.01701 1.21889 0.96700 0.96782 1.00544 1.21251 0.93957 0.91565 0.88791 0.90370 1.22280 0.93849 0.86299 0.99877 1.44342 1.20070 1.12161 1.53210 1.19102 0.87600 1.35012 0.96991 0.91801 1.25157 0.96726 1.01651 0.95205 1.70039 1.27333 1.44773 1.11118 0.86305 0.84490 0.77742 0.78674 1.20200 1.21539 1.21740 1.21048 0.92482 0.98144 0.97009 0.91043 0.91546 0.91429 0.85914 0.85486 0.84992 0.91748 0.89971 0.90311 0.94875 0.95187 0.90409 0.94046 0.92348 0.89970 0.91882 0.93654 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.10 -1.11 5.87 -104.68 -0.61 -1.73 16 3 C -0.10 -1.10 9.69 -39.49 -0.38 -1.48 16 4 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 5 C -0.09 -1.22 7.36 -39.18 -0.29 -1.51 16 6 C -0.12 -1.80 5.16 -104.97 -0.54 -2.34 16 7 C 0.56 10.08 4.68 -12.33 -0.06 10.03 16 8 O -0.55 -11.38 16.26 5.32 0.09 -11.29 16 9 N -0.58 -10.51 1.64 -173.05 -0.28 -10.79 16 10 C 0.07 1.33 4.37 -3.24 -0.01 1.31 16 11 C 0.18 3.97 2.64 -66.60 -0.18 3.80 16 12 H 0.10 2.46 6.41 -51.93 -0.33 2.13 16 13 C -0.11 -2.43 5.55 -26.53 -0.15 -2.58 16 14 C -0.14 -2.76 5.55 -26.72 -0.15 -2.91 16 15 C -0.12 -2.44 5.58 -26.54 -0.15 -2.58 16 16 C 0.15 3.13 3.62 -66.85 -0.24 2.88 16 17 H 0.08 1.58 8.01 -51.93 -0.42 1.17 16 18 C 0.10 1.87 5.89 -3.48 -0.02 1.84 16 19 N -0.58 -13.38 2.49 -155.16 -0.39 -13.77 16 20 C -0.26 -6.62 9.64 -15.06 -0.15 -6.76 16 21 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 22 C 0.01 0.34 4.91 -17.43 -0.09 0.25 16 23 N -0.89 -24.09 11.15 55.49 0.62 -23.47 16 24 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.07 -0.96 9.28 -39.19 -0.36 -1.32 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.67 6.47 -52.49 -0.34 1.33 16 35 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 36 H 0.08 1.33 4.61 -51.93 -0.24 1.09 16 37 H 0.08 1.93 7.65 -51.93 -0.40 1.53 16 38 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.53 2.48 -52.49 -0.13 1.40 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.51 6.98 -51.93 -0.36 1.15 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 46 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -29.18 348.43 -9.99 -39.17 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.83 Total: 4.78 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.41 Total: -5.48 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.05 Total: -48.03 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.18 -9.99 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039504643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.114 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds