Wall clock time and date at job start Tue Mar 31 2020 10:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.93088 * 2 1 4 4 C 1.38337 * 120.29436 * 180.28103 * 3 2 1 5 5 C 1.37976 * 120.14374 * 359.72594 * 4 3 2 6 6 C 1.39560 * 119.85195 * 359.97438 * 5 4 3 7 7 C 1.47847 * 120.14260 * 179.97438 * 6 5 4 8 8 O 1.21552 * 120.00025 * 219.47208 * 7 6 5 9 9 N 1.34774 * 119.99727 * 39.47291 * 7 6 5 10 10 C 1.46946 * 120.44453 * 5.41840 * 9 7 6 11 11 C 1.54066 * 108.29029 * 125.71399 * 10 9 7 12 12 H 1.09004 * 110.52260 * 172.27924 * 11 10 9 13 13 C 1.53368 * 108.83266 * 294.52291 * 11 10 9 14 14 C 1.53011 * 109.25539 * 60.26551 * 13 11 10 15 15 C 1.53009 * 109.79491 * 60.58075 * 14 13 11 16 16 C 1.53364 * 109.26914 * 299.43243 * 15 14 13 17 17 H 1.09003 * 111.08560 * 177.80919 * 16 15 14 18 18 C 1.46956 * 120.44170 * 185.69492 * 9 7 6 19 19 N 1.47568 * 107.98815 * 56.35216 * 16 15 14 20 20 C 1.36932 * 121.61358 * 122.29747 * 19 16 15 21 21 H 1.08002 * 119.99930 * 34.07397 * 20 19 16 22 22 C 1.38809 * 120.00238 * 214.08114 * 20 19 16 23 23 N 1.31628 * 119.99833 * 18.43673 * 22 20 19 24 24 Si 1.86798 * 120.00479 * 198.44077 * 22 20 19 25 25 H 1.48500 * 109.46888 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47358 * 119.99262 * 24 22 20 27 27 H 1.48502 * 109.47181 * 240.00168 * 24 22 20 28 28 C 1.37936 * 119.92741 * 179.72360 * 2 1 3 29 29 H 1.09007 * 109.47130 * 270.27382 * 1 2 3 30 30 H 1.09004 * 109.47215 * 30.27245 * 1 2 3 31 31 H 1.08997 * 109.47459 * 150.27732 * 1 2 3 32 32 H 1.08008 * 119.85000 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.92640 * 179.70514 * 4 3 2 34 34 H 1.08000 * 120.07397 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.62283 * 245.47209 * 10 9 7 36 36 H 1.08997 * 109.62550 * 6.04097 * 10 9 7 37 37 H 1.09000 * 109.51452 * 180.20398 * 13 11 10 38 38 H 1.09007 * 109.50752 * 300.33792 * 13 11 10 39 39 H 1.09000 * 109.41970 * 180.68272 * 14 13 11 40 40 H 1.08999 * 109.41926 * 300.54833 * 14 13 11 41 41 H 1.09002 * 109.50613 * 179.49028 * 15 14 13 42 42 H 1.09003 * 109.50471 * 59.37209 * 15 14 13 43 43 H 1.09003 * 109.62580 * 353.96632 * 18 9 7 44 44 H 1.08998 * 109.62613 * 114.34836 * 18 9 7 45 45 H 0.97000 * 119.99833 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.07088 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0059 5 6 4.2812 0.0193 -0.0060 6 6 3.5910 -1.1937 0.0002 7 6 4.3351 -2.4712 -0.0005 8 8 3.9355 -3.4069 -0.6655 9 7 5.4565 -2.5983 0.7362 10 6 5.8836 -1.5168 1.6347 11 6 6.0688 -2.1057 3.0463 12 1 6.5154 -1.3677 3.7127 13 6 4.7047 -2.5698 3.5719 14 6 4.1415 -3.6416 2.6364 15 6 5.0907 -4.8408 2.5913 16 6 6.4564 -4.3858 2.0623 17 1 7.1686 -5.2109 2.0542 18 6 6.2716 -3.8178 0.6472 19 7 6.9387 -3.2918 2.9272 20 6 8.1358 -3.3730 3.5871 21 1 8.9687 -3.8894 3.1331 22 6 8.2788 -2.7918 4.8395 23 7 7.2130 -2.4884 5.5499 24 14 9.9838 -2.4401 5.5169 25 1 11.0069 -2.8722 4.5310 26 1 10.1248 -0.9839 5.7711 27 1 10.1753 -3.1853 6.7870 28 6 2.1951 -1.1954 0.0058 29 1 -0.3634 0.0049 1.0277 30 1 -0.3634 0.8876 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6538 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0106 34 1 5.3612 0.0275 -0.0102 35 1 6.8269 -1.0994 1.2825 36 1 5.1215 -0.7380 1.6583 37 1 4.8224 -2.9855 4.5726 38 1 4.0207 -1.7218 3.6075 39 1 3.1664 -3.9647 3.0008 40 1 4.0345 -3.2275 1.6338 41 1 4.6807 -5.6049 1.9309 42 1 5.2072 -5.2506 3.5946 43 1 5.7647 -4.5522 0.0212 44 1 7.2436 -3.5778 0.2161 45 1 7.3130 -2.0820 6.4249 46 1 1.6551 -2.1307 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039504643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:44 Heat of formation + Delta-G solvation = 28.255563 kcal Electronic energy + Delta-G solvation = -27987.051947 eV Core-core repulsion = 24456.387621 eV Total energy + Delta-G solvation = -3530.664326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34696 -40.12812 -38.92001 -35.70737 -34.72074 -33.84708 -33.25530 -32.23842 -31.96938 -28.59586 -27.99532 -26.99230 -25.79790 -24.36419 -23.17205 -22.73926 -22.62612 -20.79922 -20.03212 -18.76953 -17.67097 -17.49245 -17.03256 -16.66863 -16.36089 -16.05186 -15.57225 -15.38621 -15.18484 -14.79969 -14.65316 -14.51777 -14.41842 -14.20459 -13.97378 -13.64784 -13.48368 -13.12789 -13.11669 -13.02768 -12.83292 -12.60751 -12.54243 -12.37725 -12.08952 -12.05917 -11.89097 -11.74287 -11.65808 -11.26522 -11.08312 -10.84285 -10.47775 -9.91387 -9.56863 -9.45769 -8.41566 -7.82770 -5.33618 -0.00608 0.41150 1.47484 1.52012 1.60567 1.68458 2.01122 2.52981 2.81449 3.29505 3.44710 3.51196 3.89040 3.99170 4.08550 4.12783 4.15562 4.21744 4.27107 4.32985 4.40817 4.42835 4.48435 4.60770 4.69922 4.72966 4.80514 4.81957 4.86509 4.89516 4.93334 4.99091 5.01798 5.05545 5.22788 5.28998 5.33092 5.39010 5.39560 5.45690 5.51693 5.61249 5.65455 5.72505 5.82461 6.00583 6.42058 6.43966 7.07079 7.17116 7.81422 8.46119 9.20230 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004552 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.279245 B = 6150.005647 C = 6661.528278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.096 4.096 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.143 4.143 7 C 0.558 3.442 8 O -0.582 6.582 9 N -0.583 5.583 10 C 0.090 3.910 11 C 0.182 3.818 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.134 4.134 15 C -0.116 4.116 16 C 0.148 3.852 17 H 0.077 0.923 18 C 0.109 3.891 19 N -0.590 5.590 20 C -0.265 4.265 21 H 0.061 0.939 22 C -0.031 4.031 23 N -0.916 5.916 24 Si 0.958 3.042 25 H -0.270 1.270 26 H -0.288 1.288 27 H -0.298 1.298 28 C -0.086 4.086 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.249 0.751 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 9.152 -10.676 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.114 4.114 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.146 4.146 7 C 0.349 3.651 8 O -0.464 6.464 9 N -0.314 5.314 10 C -0.034 4.034 11 C 0.075 3.925 12 H 0.091 0.909 13 C -0.143 4.143 14 C -0.172 4.172 15 C -0.155 4.155 16 C 0.041 3.959 17 H 0.095 0.905 18 C -0.015 4.015 19 N -0.312 5.312 20 C -0.396 4.396 21 H 0.079 0.921 22 C -0.228 4.228 23 N -0.560 5.560 24 Si 0.787 3.213 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.225 1.225 28 C -0.105 4.105 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.118 8.713 -10.850 17.205 hybrid contribution 1.061 -0.446 1.094 1.588 sum -9.057 8.267 -9.756 15.670 Atomic orbital electron populations 1.20850 0.88891 1.03891 1.03265 1.20184 0.97793 0.92280 0.99433 1.21620 0.94357 0.98367 0.97068 1.21453 0.94697 0.98221 0.99263 1.21573 1.00770 0.91573 0.98145 1.19864 0.94741 0.92805 1.07188 1.18563 0.80237 0.87966 0.78291 1.90717 1.68535 1.41868 1.45304 1.48058 1.23730 1.18673 1.40907 1.22956 1.00443 0.89237 0.90740 1.20979 0.89695 0.89611 0.92244 0.90879 1.21663 0.96842 0.97223 0.98583 1.22078 0.96617 0.96604 1.01928 1.21828 0.96992 0.97285 0.99379 1.21354 0.93805 0.91174 0.89584 0.90494 1.22113 0.94513 0.86723 0.98190 1.44507 1.19846 1.13477 1.53336 1.19332 0.88556 1.34517 0.97154 0.92131 1.25764 0.99497 1.02043 0.95530 1.70178 1.28864 1.45763 1.11175 0.85367 0.81151 0.77169 0.77588 1.19466 1.21497 1.22535 1.21120 0.92156 0.98979 0.98292 0.90320 0.89304 0.91511 0.82458 0.82445 0.84685 0.90980 0.87798 0.94157 0.93492 0.94818 0.89368 0.92477 0.94874 0.89691 0.91048 0.94180 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.23 0.71 -0.89 16 2 C -0.10 -1.97 5.87 -19.90 -0.12 -2.09 16 3 C -0.10 -1.63 9.69 22.33 0.22 -1.41 16 4 C -0.12 -2.17 10.03 22.23 0.22 -1.95 16 5 C -0.10 -2.47 7.36 22.53 0.17 -2.30 16 6 C -0.14 -4.24 5.16 -20.09 -0.10 -4.35 16 7 C 0.56 19.84 4.68 86.79 0.41 20.24 16 8 O -0.58 -23.92 16.26 -3.88 -0.06 -23.99 16 9 N -0.58 -20.64 1.64 -819.70 -1.34 -21.99 16 10 C 0.09 3.12 4.37 86.65 0.38 3.50 16 11 C 0.18 7.93 2.64 45.27 0.12 8.05 16 12 H 0.07 3.63 6.41 -2.38 -0.02 3.61 16 13 C -0.10 -4.49 5.55 30.72 0.17 -4.32 16 14 C -0.13 -5.42 5.55 30.60 0.17 -5.25 16 15 C -0.12 -4.77 5.58 30.72 0.17 -4.60 16 16 C 0.15 6.13 3.62 45.11 0.16 6.30 16 17 H 0.08 3.16 8.01 -2.39 -0.02 3.14 16 18 C 0.11 3.97 5.89 86.49 0.51 4.48 16 19 N -0.59 -27.75 2.49 -644.79 -1.61 -29.36 16 20 C -0.27 -13.82 9.64 84.03 0.81 -13.01 16 21 H 0.06 3.14 7.90 -2.91 -0.02 3.11 16 22 C -0.03 -1.62 4.91 84.86 0.42 -1.20 16 23 N -0.92 -50.88 11.15 21.65 0.24 -50.64 16 24 Si 0.96 42.93 29.59 68.60 2.03 44.96 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 28 C -0.09 -2.34 9.28 22.52 0.21 -2.13 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 3.10 6.47 -2.91 -0.02 3.08 16 35 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 36 H 0.10 3.19 4.61 -2.39 -0.01 3.18 16 37 H 0.04 2.04 7.65 -2.39 -0.02 2.02 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 3.44 2.48 -3.50 -0.01 3.43 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 3.08 6.98 -2.39 -0.02 3.06 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 46 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -64.20 348.43 4.86 -59.34 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.97 Total: 22.58 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.62 Total: -0.91 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -2.70 Total: -101.98 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.20 4.86 -59.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039504643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.594 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds