Wall clock time and date at job start Tue Mar 31 2020 10:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 119.85327 * 2 1 4 4 C 1.37962 * 120.14530 * 180.02562 * 3 2 1 5 5 C 1.39586 * 119.84630 * 0.02562 * 4 3 2 6 6 C 1.47846 * 120.13670 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00156 * 325.79842 * 6 5 4 8 8 N 1.34780 * 119.99909 * 146.07909 * 6 5 4 9 9 C 1.46944 * 120.43877 * 173.88209 * 8 6 5 10 10 C 1.53603 * 108.52315 * 125.75506 * 9 8 6 11 11 H 1.08997 * 110.59345 * 172.77421 * 10 9 8 12 12 C 1.53365 * 108.68678 * 294.36374 * 10 9 8 13 13 C 1.53006 * 109.27956 * 60.31394 * 12 10 9 14 14 C 1.53009 * 109.80184 * 60.55624 * 13 12 10 15 15 C 1.53373 * 109.24978 * 299.42447 * 14 13 12 16 16 H 1.08991 * 110.59388 * 178.14922 * 15 14 13 17 17 C 1.46938 * 120.44065 * 353.60837 * 8 6 5 18 18 N 1.47566 * 107.98422 * 56.38431 * 15 14 13 19 19 C 1.36938 * 121.60919 * 122.22426 * 18 15 14 20 20 H 1.08002 * 120.00408 * 328.70388 * 19 18 15 21 21 C 1.38814 * 119.99849 * 148.70754 * 19 18 15 22 22 N 1.31610 * 120.00070 * 349.20326 * 21 19 18 23 23 Si 1.86800 * 119.99879 * 169.20373 * 21 19 18 24 24 H 1.48505 * 109.47161 * 89.99986 * 23 21 19 25 25 H 1.48501 * 109.47408 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.47435 * 329.99941 * 23 21 19 27 27 C 1.39567 * 119.71485 * 0.25226 * 5 4 3 28 28 C 1.37961 * 119.85526 * 359.46917 * 27 5 4 29 29 H 1.09006 * 109.46863 * 89.99730 * 1 2 3 30 30 H 1.08996 * 109.47557 * 209.99726 * 1 2 3 31 31 H 1.08999 * 109.47066 * 330.00248 * 1 2 3 32 32 H 1.07995 * 119.93242 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.07663 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.62873 * 245.45661 * 9 8 6 35 35 H 1.08999 * 109.63183 * 6.04082 * 9 8 6 36 36 H 1.09003 * 109.50571 * 180.24873 * 12 10 9 37 37 H 1.08999 * 109.50377 * 300.33123 * 12 10 9 38 38 H 1.08997 * 109.42002 * 180.65758 * 13 12 10 39 39 H 1.09005 * 109.41548 * 300.52311 * 13 12 10 40 40 H 1.08997 * 109.50954 * 59.35766 * 14 13 12 41 41 H 1.09003 * 109.50575 * 179.49343 * 14 13 12 42 42 H 1.09002 * 109.62596 * 353.94474 * 17 8 6 43 43 H 1.09003 * 109.62845 * 114.50578 * 17 8 6 44 44 H 0.97004 * 120.00125 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.07163 * 179.72702 * 27 5 4 46 46 H 1.07993 * 119.92940 * 180.27315 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0016 6 6 5.7546 -0.0001 -0.0028 7 8 6.3620 0.8708 -0.5946 8 7 6.4291 -0.9690 0.6477 9 6 7.8921 -1.0566 0.5427 10 6 8.4838 -1.0577 1.9602 11 1 9.5563 -1.2495 1.9279 12 6 8.1980 0.3002 2.6131 13 6 6.6851 0.5173 2.6860 14 6 6.0434 -0.5851 3.5309 15 6 6.3204 -1.9464 2.8809 16 1 5.9000 -2.7515 3.4833 17 6 5.7116 -1.9480 1.4759 18 7 7.7818 -2.0952 2.7403 19 6 8.4541 -3.1450 3.3069 20 1 8.0969 -3.5810 4.2282 21 6 9.5949 -3.6488 2.6972 22 7 9.9121 -3.2680 1.4780 23 14 10.6798 -4.8671 3.6073 24 1 10.2183 -6.2496 3.3227 25 1 12.0858 -4.7117 3.1554 26 1 10.5977 -4.6086 5.0673 27 6 3.5753 -1.2070 -0.0075 28 6 2.1957 -1.2001 -0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6523 2.1332 0.0004 33 1 4.1118 2.1443 -0.0010 34 1 8.1679 -1.9782 0.0302 35 1 8.2716 -0.1983 -0.0117 36 1 8.6166 0.3156 3.6195 37 1 8.6517 1.0928 2.0181 38 1 6.4796 1.4871 3.1391 39 1 6.2665 0.4915 1.6798 40 1 6.4677 -0.5680 4.5347 41 1 4.9673 -0.4207 3.5870 42 1 4.6579 -1.6754 1.5349 43 1 5.8116 -2.9412 1.0380 44 1 10.7095 -3.6198 1.0520 45 1 4.1117 -2.1443 -0.0128 46 1 1.6521 -2.1332 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039980710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:49 Heat of formation + Delta-G solvation = 46.370188 kcal Electronic energy + Delta-G solvation = -27919.662390 eV Core-core repulsion = 24389.783573 eV Total energy + Delta-G solvation = -3529.878817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88710 -38.98886 -37.44036 -34.11737 -33.00189 -32.75121 -31.77544 -30.94279 -30.24710 -27.82685 -26.54439 -25.51179 -23.75814 -22.72669 -22.17446 -21.35091 -21.09438 -19.66015 -18.36106 -17.39986 -16.33534 -15.91106 -15.51338 -14.94744 -14.77448 -14.62019 -14.24357 -13.93481 -13.88049 -13.58060 -13.47190 -13.15395 -13.07399 -12.78719 -12.46691 -12.34467 -12.17243 -12.02662 -11.88110 -11.59505 -11.22553 -11.10756 -10.92802 -10.81859 -10.72076 -10.42364 -10.14029 -10.06966 -10.02593 -9.62105 -9.40408 -9.22442 -8.91966 -8.65880 -8.62252 -7.74766 -6.56132 -5.85786 -3.33531 0.98132 1.35832 3.06987 3.33218 3.41003 3.42086 3.53044 3.87493 4.42046 4.67631 4.74698 4.86611 4.95633 5.17029 5.18655 5.31069 5.36309 5.39244 5.58035 5.61100 5.69835 5.71973 5.75881 5.83409 5.88959 5.92027 5.98444 6.11947 6.22874 6.32503 6.33429 6.39345 6.48083 6.48207 6.55998 6.57499 6.71908 6.77451 6.82835 6.87895 6.90172 7.00845 7.15917 7.32269 7.60535 7.73644 8.02342 8.37455 8.62184 9.12436 9.72333 10.35984 11.21761 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.004181 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.567263 B = 6694.741250 C = 7019.533774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.131 4.131 4 C -0.063 4.063 5 C -0.127 4.127 6 C 0.552 3.448 7 O -0.552 6.552 8 N -0.581 5.581 9 C 0.108 3.892 10 C 0.180 3.820 11 H 0.116 0.884 12 C -0.131 4.131 13 C -0.139 4.139 14 C -0.123 4.123 15 C 0.152 3.848 16 H 0.078 0.922 17 C 0.081 3.919 18 N -0.579 5.579 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.085 4.085 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.255 0.745 45 H 0.137 0.863 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 5.163 -1.689 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.130 4.130 6 C 0.341 3.659 7 O -0.432 6.432 8 N -0.312 5.312 9 C -0.015 4.015 10 C 0.073 3.927 11 H 0.133 0.867 12 C -0.170 4.170 13 C -0.177 4.177 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.096 0.904 17 C -0.044 4.044 18 N -0.300 5.300 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.103 4.103 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.154 0.846 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.154 5.497 -2.073 16.253 hybrid contribution 0.644 -0.711 0.506 1.084 sum -14.510 4.786 -1.567 15.359 Atomic orbital electron populations 1.20826 0.91159 1.02877 1.02366 1.20072 0.96102 0.93221 0.97799 1.20954 0.93788 0.97651 1.02490 1.21190 0.93833 0.97444 0.95732 1.20059 0.93657 0.94365 1.04933 1.18095 0.86824 0.81840 0.79108 1.90746 1.69681 1.37024 1.45794 1.48166 1.08964 1.28568 1.45539 1.22339 0.76394 1.02228 1.00503 1.21086 0.99225 0.84971 0.87380 0.86660 1.22082 0.95313 0.99153 1.00450 1.22078 0.97243 0.96280 1.02054 1.21966 0.98064 0.96892 0.99350 1.21156 0.86860 0.95096 0.92475 0.90371 1.22795 0.95721 0.91928 0.93918 1.44318 0.99493 1.24914 1.61294 1.19128 1.07707 1.08353 1.02700 0.91770 1.25105 1.00510 0.98338 0.95197 1.69876 1.26709 1.46082 1.11994 0.86256 0.79884 0.81076 0.79246 1.21432 1.21607 1.20575 1.21606 0.94369 0.97814 0.96540 1.20974 0.93815 0.97703 1.02369 0.91066 0.91387 0.91482 0.85724 0.85239 0.89657 0.91025 0.93061 0.93617 0.95056 0.89696 0.92613 0.93739 0.90000 0.91377 0.93460 0.84555 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 36.01 0.36 -0.48 16 2 C -0.07 -0.74 5.89 -104.53 -0.62 -1.36 16 3 C -0.13 -1.46 9.68 -39.64 -0.38 -1.85 16 4 C -0.06 -0.88 9.61 -39.18 -0.38 -1.25 16 5 C -0.13 -1.98 5.31 -104.97 -0.56 -2.54 16 6 C 0.55 10.47 4.74 -12.33 -0.06 10.41 16 7 O -0.55 -12.07 16.15 5.32 0.09 -11.98 16 8 N -0.58 -11.22 1.66 -173.64 -0.29 -11.51 16 9 C 0.11 2.36 5.83 -3.49 -0.02 2.34 16 10 C 0.18 4.12 2.60 -66.84 -0.17 3.95 16 11 H 0.12 2.98 6.01 -51.93 -0.31 2.67 16 12 C -0.13 -2.71 5.58 -26.54 -0.15 -2.86 16 13 C -0.14 -2.65 5.55 -26.72 -0.15 -2.80 16 14 C -0.12 -2.23 5.58 -26.53 -0.15 -2.38 16 15 C 0.15 2.97 3.61 -67.09 -0.24 2.73 16 16 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 17 C 0.08 1.42 4.16 -3.74 -0.02 1.41 16 18 N -0.58 -13.49 2.53 -155.71 -0.39 -13.88 16 19 C -0.25 -6.40 9.73 -15.06 -0.15 -6.55 16 20 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 21 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 22 N -0.90 -24.20 10.43 55.49 0.58 -23.62 16 23 Si 0.91 20.82 29.57 -169.99 -5.03 15.79 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.08 -1.13 7.36 -39.19 -0.29 -1.42 16 28 C -0.13 -1.44 9.68 -39.64 -0.38 -1.82 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.79 7.99 -52.49 -0.42 1.37 16 34 H 0.09 2.06 7.61 -51.93 -0.40 1.66 16 35 H 0.07 1.59 6.98 -51.93 -0.36 1.23 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.66 2.48 -52.47 -0.13 1.53 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.23 4.38 -51.93 -0.23 1.01 16 43 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.14 1.77 5.95 -52.49 -0.31 1.46 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -28.93 346.46 -10.02 -38.95 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.76 Total: 5.39 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.44 Total: -4.37 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.10 Total: -49.01 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.93 -10.02 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039980710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.316 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds