Wall clock time and date at job start Tue Mar 31 2020 10:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 119.85327 * 2 1 4 4 C 1.37962 * 120.14530 * 180.02562 * 3 2 1 5 5 C 1.39586 * 119.84630 * 0.02562 * 4 3 2 6 6 C 1.47846 * 120.13670 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00156 * 325.79842 * 6 5 4 8 8 N 1.34780 * 119.99909 * 146.07909 * 6 5 4 9 9 C 1.46944 * 120.43877 * 173.88209 * 8 6 5 10 10 C 1.53603 * 108.52315 * 125.75506 * 9 8 6 11 11 H 1.08997 * 110.59345 * 172.77421 * 10 9 8 12 12 C 1.53365 * 108.68678 * 294.36374 * 10 9 8 13 13 C 1.53006 * 109.27956 * 60.31394 * 12 10 9 14 14 C 1.53009 * 109.80184 * 60.55624 * 13 12 10 15 15 C 1.53373 * 109.24978 * 299.42447 * 14 13 12 16 16 H 1.08991 * 110.59388 * 178.14922 * 15 14 13 17 17 C 1.46938 * 120.44065 * 353.60837 * 8 6 5 18 18 N 1.47566 * 107.98422 * 56.38431 * 15 14 13 19 19 C 1.36938 * 121.60919 * 122.22426 * 18 15 14 20 20 H 1.08002 * 120.00408 * 328.70388 * 19 18 15 21 21 C 1.38814 * 119.99849 * 148.70754 * 19 18 15 22 22 N 1.31610 * 120.00070 * 349.20326 * 21 19 18 23 23 Si 1.86800 * 119.99879 * 169.20373 * 21 19 18 24 24 H 1.48505 * 109.47161 * 89.99986 * 23 21 19 25 25 H 1.48501 * 109.47408 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.47435 * 329.99941 * 23 21 19 27 27 C 1.39567 * 119.71485 * 0.25226 * 5 4 3 28 28 C 1.37961 * 119.85526 * 359.46917 * 27 5 4 29 29 H 1.09006 * 109.46863 * 89.99730 * 1 2 3 30 30 H 1.08996 * 109.47557 * 209.99726 * 1 2 3 31 31 H 1.08999 * 109.47066 * 330.00248 * 1 2 3 32 32 H 1.07995 * 119.93242 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.07663 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.62873 * 245.45661 * 9 8 6 35 35 H 1.08999 * 109.63183 * 6.04082 * 9 8 6 36 36 H 1.09003 * 109.50571 * 180.24873 * 12 10 9 37 37 H 1.08999 * 109.50377 * 300.33123 * 12 10 9 38 38 H 1.08997 * 109.42002 * 180.65758 * 13 12 10 39 39 H 1.09005 * 109.41548 * 300.52311 * 13 12 10 40 40 H 1.08997 * 109.50954 * 59.35766 * 14 13 12 41 41 H 1.09003 * 109.50575 * 179.49343 * 14 13 12 42 42 H 1.09002 * 109.62596 * 353.94474 * 17 8 6 43 43 H 1.09003 * 109.62845 * 114.50578 * 17 8 6 44 44 H 0.97004 * 120.00125 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.07163 * 179.72702 * 27 5 4 46 46 H 1.07993 * 119.92940 * 180.27315 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0016 6 6 5.7546 -0.0001 -0.0028 7 8 6.3620 0.8708 -0.5946 8 7 6.4291 -0.9690 0.6477 9 6 7.8921 -1.0566 0.5427 10 6 8.4838 -1.0577 1.9602 11 1 9.5563 -1.2495 1.9279 12 6 8.1980 0.3002 2.6131 13 6 6.6851 0.5173 2.6860 14 6 6.0434 -0.5851 3.5309 15 6 6.3204 -1.9464 2.8809 16 1 5.9000 -2.7515 3.4833 17 6 5.7116 -1.9480 1.4759 18 7 7.7818 -2.0952 2.7403 19 6 8.4541 -3.1450 3.3069 20 1 8.0969 -3.5810 4.2282 21 6 9.5949 -3.6488 2.6972 22 7 9.9121 -3.2680 1.4780 23 14 10.6798 -4.8671 3.6073 24 1 10.2183 -6.2496 3.3227 25 1 12.0858 -4.7117 3.1554 26 1 10.5977 -4.6086 5.0673 27 6 3.5753 -1.2070 -0.0075 28 6 2.1957 -1.2001 -0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6523 2.1332 0.0004 33 1 4.1118 2.1443 -0.0010 34 1 8.1679 -1.9782 0.0302 35 1 8.2716 -0.1983 -0.0117 36 1 8.6166 0.3156 3.6195 37 1 8.6517 1.0928 2.0181 38 1 6.4796 1.4871 3.1391 39 1 6.2665 0.4915 1.6798 40 1 6.4677 -0.5680 4.5347 41 1 4.9673 -0.4207 3.5870 42 1 4.6579 -1.6754 1.5349 43 1 5.8116 -2.9412 1.0380 44 1 10.7095 -3.6198 1.0520 45 1 4.1117 -2.1443 -0.0128 46 1 1.6521 -2.1332 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039980710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:48 Heat of formation + Delta-G solvation = 32.603756 kcal Electronic energy + Delta-G solvation = -27920.259347 eV Core-core repulsion = 24389.783573 eV Total energy + Delta-G solvation = -3530.475775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35600 -40.12921 -38.93679 -35.74414 -34.65662 -33.99212 -33.22330 -32.11388 -31.86022 -29.08980 -27.92784 -27.03167 -25.48045 -23.75676 -23.55571 -22.85445 -22.52163 -21.00757 -20.06580 -18.89420 -17.92694 -17.25489 -16.72159 -16.63727 -16.18809 -15.97466 -15.58333 -15.45699 -15.17436 -14.81256 -14.62369 -14.44303 -14.41395 -14.35785 -14.02468 -13.81582 -13.53521 -13.11002 -12.95328 -12.91296 -12.76269 -12.61345 -12.50731 -12.35058 -12.20002 -11.98909 -11.82736 -11.71787 -11.67560 -11.26417 -11.07185 -10.79649 -10.58222 -9.87338 -9.62777 -9.40383 -8.40238 -7.82554 -5.32325 -0.04496 0.43262 1.48427 1.51289 1.58729 1.74624 2.05428 2.52878 2.81872 3.33268 3.47734 3.52700 3.88918 4.02219 4.03288 4.11937 4.16423 4.19935 4.24542 4.36920 4.43623 4.46859 4.53006 4.63918 4.73583 4.79648 4.82875 4.83663 4.88067 4.93228 4.96027 5.04751 5.11557 5.14755 5.19566 5.27817 5.30007 5.37447 5.40069 5.45626 5.46611 5.64167 5.64546 5.66550 5.81971 6.00493 6.42444 6.52111 7.11434 7.17142 7.82867 8.44006 9.22163 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.004181 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.567263 B = 6694.741250 C = 7019.533774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.154 4.154 6 C 0.552 3.448 7 O -0.590 6.590 8 N -0.583 5.583 9 C 0.123 3.877 10 C 0.182 3.818 11 H 0.079 0.921 12 C -0.125 4.125 13 C -0.138 4.138 14 C -0.114 4.114 15 C 0.144 3.856 16 H 0.089 0.911 17 C 0.089 3.911 18 N -0.593 5.593 19 C -0.257 4.257 20 H 0.066 0.934 21 C -0.040 4.040 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.275 1.275 27 C -0.092 4.092 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.059 0.941 44 H 0.248 0.752 45 H 0.135 0.865 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 5.195 -0.855 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.145 4.145 4 C -0.093 4.093 5 C -0.157 4.157 6 C 0.344 3.656 7 O -0.473 6.473 8 N -0.314 5.314 9 C -0.001 4.001 10 C 0.075 3.925 11 H 0.097 0.903 12 C -0.164 4.164 13 C -0.176 4.176 14 C -0.152 4.152 15 C 0.037 3.963 16 H 0.107 0.893 17 C -0.034 4.034 18 N -0.315 5.315 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.236 4.236 22 N -0.570 5.570 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.200 1.200 27 C -0.110 4.110 28 C -0.144 4.144 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.153 0.847 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.198 5.527 -1.218 20.015 hybrid contribution 1.768 -0.671 0.212 1.903 sum -17.430 4.856 -1.006 18.122 Atomic orbital electron populations 1.20920 0.88406 1.04300 1.03544 1.20526 0.98027 0.92492 0.95109 1.21264 0.92587 0.99426 1.01217 1.21248 0.95155 0.96467 0.96467 1.19825 0.91075 0.96138 1.08644 1.18700 0.88483 0.80629 0.77740 1.90711 1.70950 1.38443 1.47213 1.48121 1.07711 1.29362 1.46186 1.21873 0.78649 1.00073 0.99498 1.20849 0.97380 0.86138 0.88130 0.90298 1.21978 0.97066 0.97762 0.99607 1.22069 0.95576 0.97497 1.02430 1.21871 0.99799 0.95245 0.98330 1.21409 0.84647 0.96414 0.93864 0.89344 1.22801 0.97155 0.91207 0.92241 1.44457 1.01325 1.24491 1.61212 1.19391 1.08065 1.08447 1.02779 0.91626 1.25739 1.01828 1.00138 0.95880 1.70044 1.26712 1.47153 1.13137 0.85336 0.77804 0.79213 0.78328 1.21233 1.22486 1.20020 1.21629 0.95552 0.96750 0.97103 1.21315 0.92761 0.99391 1.00894 0.89819 0.89995 0.90172 0.83020 0.86177 0.92610 0.92229 0.93735 0.93774 0.93708 0.89919 0.93230 0.90598 0.86565 0.92274 0.94220 0.84737 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.00 71.24 0.71 -0.34 16 2 C -0.06 -0.99 5.89 -19.81 -0.12 -1.11 16 3 C -0.13 -2.39 9.68 22.23 0.22 -2.17 16 4 C -0.07 -1.94 9.61 22.53 0.22 -1.72 16 5 C -0.15 -4.60 5.31 -20.09 -0.11 -4.71 16 6 C 0.55 21.18 4.74 86.79 0.41 21.59 16 7 O -0.59 -26.66 16.15 -3.89 -0.06 -26.72 16 8 N -0.58 -22.89 1.66 -821.55 -1.36 -24.26 16 9 C 0.12 5.69 5.83 86.50 0.50 6.19 16 10 C 0.18 8.71 2.60 45.11 0.12 8.82 16 11 H 0.08 4.35 6.01 -2.39 -0.01 4.33 16 12 C -0.12 -5.31 5.58 30.72 0.17 -5.14 16 13 C -0.14 -5.16 5.55 30.60 0.17 -4.99 16 14 C -0.11 -3.89 5.58 30.72 0.17 -3.72 16 15 C 0.14 5.45 3.61 44.95 0.16 5.62 16 16 H 0.09 3.17 8.03 -2.39 -0.02 3.15 16 17 C 0.09 3.08 4.16 86.34 0.36 3.44 16 18 N -0.59 -28.08 2.53 -646.53 -1.63 -29.71 16 19 C -0.26 -13.36 9.73 84.03 0.82 -12.55 16 20 H 0.07 3.34 7.85 -2.91 -0.02 3.31 16 21 C -0.04 -2.11 5.13 84.86 0.44 -1.68 16 22 N -0.93 -51.79 10.43 21.65 0.23 -51.57 16 23 Si 0.96 43.68 29.57 68.60 2.03 45.71 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.09 -2.23 7.36 22.52 0.17 -2.06 16 28 C -0.13 -2.25 9.68 22.23 0.22 -2.04 16 29 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.08 0.57 8.08 -2.39 -0.02 0.56 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.12 3.27 7.99 -2.91 -0.02 3.24 16 34 H 0.06 2.88 7.61 -2.39 -0.02 2.86 16 35 H 0.06 2.84 6.98 -2.39 -0.02 2.82 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 3.20 2.48 -3.46 -0.01 3.19 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.12 3.23 4.38 -2.39 -0.01 3.22 16 43 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 44 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 45 H 0.13 3.25 5.95 -2.91 -0.02 3.24 16 46 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -65.29 346.46 4.79 -60.49 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.98 Total: 22.61 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.62 Total: 3.44 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -2.77 Total: -105.53 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.29 4.79 -60.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039980710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.097 kcal (2) G-P(sol) polarization free energy of solvation -65.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds