Wall clock time and date at job start Tue Mar 31 2020 10:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37983 * 120.07254 * 2 1 4 4 C 1.38336 * 120.14306 * 180.25295 * 3 2 1 5 5 C 1.38380 * 120.29331 * 359.74735 * 4 3 2 6 6 C 1.37935 * 120.14480 * 359.96953 * 5 4 3 7 7 C 1.39551 * 120.07379 * 179.72000 * 2 1 3 8 8 C 1.47846 * 120.14506 * 0.02562 * 7 2 1 9 9 O 1.21547 * 120.00309 * 313.42901 * 8 7 2 10 10 N 1.34782 * 119.99754 * 133.42972 * 8 7 2 11 11 C 1.48261 * 127.73524 * 354.63386 * 10 8 7 12 12 C 1.54717 * 104.66120 * 141.21208 * 11 10 8 13 13 C 1.53032 * 104.47800 * 23.66738 * 12 11 10 14 14 C 1.53879 * 111.37251 * 121.01099 * 13 12 11 15 15 C 1.55146 * 101.45201 * 154.99115 * 14 13 12 16 16 N 1.47536 * 105.06944 * 324.20825 * 15 14 13 17 17 C 1.36931 * 125.67367 * 203.96883 * 16 15 14 18 18 H 1.08000 * 120.00510 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99919 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47051 * 90.00067 * 21 19 17 23 23 H 1.48501 * 109.47330 * 209.99803 * 21 19 17 24 24 H 1.48503 * 109.47231 * 330.00263 * 21 19 17 25 25 C 1.47606 * 108.51694 * 23.93203 * 16 15 14 26 26 C 1.48449 * 127.73297 * 174.66091 * 10 8 7 27 27 H 1.08995 * 109.47078 * 264.74945 * 1 2 3 28 28 H 1.08994 * 109.47068 * 24.75373 * 1 2 3 29 29 H 1.08998 * 109.46770 * 144.75253 * 1 2 3 30 30 H 1.08004 * 119.92752 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.85156 * 179.76241 * 4 3 2 32 32 H 1.07996 * 119.92585 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.07166 * 180.02562 * 6 5 4 34 34 H 1.08996 * 110.40072 * 22.41489 * 11 10 8 35 35 H 1.09001 * 110.39594 * 260.00746 * 11 10 8 36 36 H 1.09000 * 110.43074 * 264.90863 * 12 11 10 37 37 H 1.09000 * 110.53562 * 142.46696 * 12 11 10 38 38 H 1.09007 * 111.03184 * 36.95532 * 14 13 12 39 39 H 1.08997 * 111.06360 * 273.05047 * 14 13 12 40 40 H 1.09005 * 110.33736 * 83.13452 * 15 14 13 41 41 H 1.08999 * 110.34040 * 205.28022 * 15 14 13 42 42 H 0.96995 * 120.00051 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.94094 * 238.65875 * 25 16 15 44 44 H 1.08998 * 109.95821 * 117.41569 * 25 16 15 45 45 H 1.08994 * 110.46712 * 99.67704 * 26 10 8 46 46 H 1.09007 * 110.46553 * 337.09211 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 -0.0053 6 6 3.6023 -1.1988 0.0005 7 6 2.2063 -1.2076 0.0059 8 6 1.4720 -2.4908 0.0116 9 8 0.5418 -2.6554 0.7764 10 7 1.8341 -3.4782 -0.8314 11 6 2.8594 -3.4275 -1.9011 12 6 3.5542 -4.8087 -1.8434 13 6 2.5202 -5.7302 -1.1926 14 6 2.1596 -6.9080 -2.1149 15 6 1.6877 -7.9705 -1.0875 16 7 2.5560 -7.7779 0.0896 17 6 2.8409 -8.7262 1.0354 18 1 3.4909 -8.4849 1.8636 19 6 2.2944 -9.9979 0.9299 20 7 1.5028 -10.2923 -0.0795 21 14 2.6837 -11.2918 2.2198 22 1 1.6790 -11.2207 3.3110 23 1 2.6435 -12.6393 1.5971 24 1 4.0378 -11.0439 2.7767 25 6 3.0655 -6.3927 0.0748 26 6 1.2953 -4.8599 -0.8970 27 1 -0.3633 -0.0940 1.0233 28 1 -0.3633 0.9332 -0.4303 29 1 -0.3633 -0.8393 -0.5931 30 1 1.6584 2.1294 -0.0004 31 1 4.1182 2.1332 -0.0091 32 1 5.3612 0.0101 -0.0090 33 1 4.1494 -2.1300 0.0009 34 1 3.5776 -2.6323 -1.7017 35 1 2.3877 -3.2798 -2.8726 36 1 4.4553 -4.7560 -1.2323 37 1 3.7962 -5.1572 -2.8474 38 1 3.0341 -7.2567 -2.6643 39 1 1.3534 -6.6387 -2.7973 40 1 0.6444 -7.8021 -0.8204 41 1 1.8169 -8.9738 -1.4935 42 1 1.1212 -11.1809 -0.1534 43 1 4.1553 -6.3975 0.0531 44 1 2.7127 -5.8570 0.9561 45 1 0.5638 -4.9460 -1.7004 46 1 0.8495 -5.1409 0.0573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041032554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:46 Heat of formation + Delta-G solvation = 26.083957 kcal Electronic energy + Delta-G solvation = -26523.841366 eV Core-core repulsion = 22993.082872 eV Total energy + Delta-G solvation = -3530.758494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62183 -39.28703 -37.85012 -35.69368 -32.98390 -32.73379 -31.47200 -30.41054 -29.18235 -28.06337 -27.26208 -25.78838 -24.55303 -23.16682 -22.24266 -21.74335 -20.30671 -19.54073 -18.76179 -17.32628 -16.71150 -16.41849 -15.82431 -15.68113 -15.09464 -14.78267 -14.49228 -14.32224 -14.04162 -13.63922 -13.57263 -13.39748 -13.18734 -12.75463 -12.53546 -12.32607 -12.20941 -11.98596 -11.75954 -11.67626 -11.56294 -11.34231 -11.29249 -11.20718 -10.88944 -10.78722 -10.19719 -10.05874 -9.92606 -9.83604 -9.71371 -9.46438 -9.14609 -8.92351 -8.63272 -8.56837 -6.80711 -5.62850 -3.04019 0.80264 1.11394 2.74349 2.98607 3.42151 3.47069 3.48681 3.56008 4.38510 4.50487 4.58803 4.62688 4.72622 4.76921 4.92036 5.00393 5.06496 5.20645 5.28507 5.41338 5.42387 5.51550 5.52610 5.56875 5.57803 5.68549 5.79999 5.84654 5.91080 6.00809 6.04983 6.09242 6.10455 6.16240 6.21083 6.31655 6.36464 6.39590 6.56336 6.61731 6.66805 6.78885 6.86255 7.52851 7.62515 7.64473 7.87205 8.19637 8.37871 9.24478 9.84908 10.50524 11.41126 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.003080 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.781791 B = 9088.976140 C = 9147.857663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.036 4.036 3 C -0.128 4.128 4 C -0.099 4.099 5 C -0.132 4.132 6 C -0.084 4.084 7 C -0.123 4.123 8 C 0.578 3.422 9 O -0.531 6.531 10 N -0.616 5.616 11 C 0.094 3.906 12 C -0.120 4.120 13 C -0.084 4.084 14 C -0.131 4.131 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.151 3.849 26 C 0.126 3.874 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.012 0.988 41 H 0.106 0.894 42 H 0.251 0.749 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.071 0.929 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 22.291 -6.618 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.037 4.037 3 C -0.146 4.146 4 C -0.117 4.117 5 C -0.150 4.150 6 C -0.103 4.103 7 C -0.126 4.126 8 C 0.366 3.634 9 O -0.408 6.408 10 N -0.350 5.350 11 C -0.029 4.029 12 C -0.158 4.158 13 C -0.085 4.085 14 C -0.170 4.170 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.025 3.975 26 C 0.005 3.995 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.124 0.876 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.558 22.048 -6.072 23.144 hybrid contribution 0.282 -0.666 0.703 1.008 sum 3.839 21.382 -5.369 22.378 Atomic orbital electron populations 1.20840 0.90395 1.02365 1.03549 1.19955 0.96513 0.91592 0.95663 1.21000 0.94301 0.97270 1.02044 1.21297 0.94213 0.98239 0.97970 1.21087 1.00156 0.92123 1.01633 1.21356 0.92758 0.98867 0.97304 1.19812 0.93912 0.92970 1.05870 1.17866 0.83157 0.82595 0.79733 1.90804 1.28953 1.81149 1.39939 1.49062 1.39595 1.12598 1.33719 1.22678 0.90781 0.98873 0.90567 1.22492 0.98209 0.93368 1.01751 1.21592 0.94262 0.94905 0.97761 1.22979 1.00482 0.95927 0.97595 1.21990 0.91739 0.98545 0.85084 1.44666 1.54974 1.06520 1.26890 1.19070 1.23884 0.90141 1.01782 0.90595 1.24768 0.99696 0.97603 0.98625 1.69792 1.36294 1.20320 1.30746 0.86079 0.77829 0.81069 0.80570 1.21649 1.21671 1.20738 1.21266 0.95997 0.86861 0.93349 1.22317 0.95568 0.78643 1.03020 0.90062 0.91679 0.91248 0.85499 0.85715 0.85462 0.85113 0.90062 0.91080 0.90783 0.90014 0.91648 0.92092 0.97030 0.87644 0.93777 0.95695 0.96087 0.91088 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.82 36.01 0.32 -0.95 16 2 C -0.04 -0.42 5.91 -104.22 -0.62 -1.04 16 3 C -0.13 -1.17 9.67 -39.64 -0.38 -1.55 16 4 C -0.10 -0.81 10.04 -39.49 -0.40 -1.20 16 5 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 6 C -0.08 -0.91 7.81 -39.18 -0.31 -1.22 16 7 C -0.12 -1.60 5.40 -104.97 -0.57 -2.16 16 8 C 0.58 9.23 6.61 -12.33 -0.08 9.15 16 9 O -0.53 -10.37 15.93 5.32 0.08 -10.29 16 10 N -0.62 -9.11 3.33 -170.63 -0.57 -9.68 16 11 C 0.09 1.06 6.66 -2.17 -0.01 1.05 16 12 C -0.12 -1.50 6.31 -25.81 -0.16 -1.67 16 13 C -0.08 -1.40 0.79 -153.93 -0.12 -1.52 16 14 C -0.13 -2.34 5.90 -25.14 -0.15 -2.49 16 15 C 0.15 3.63 5.81 -2.34 -0.01 3.61 16 16 N -0.60 -15.58 3.42 -170.14 -0.58 -16.16 16 17 C -0.22 -6.24 10.29 -15.06 -0.15 -6.39 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -27.04 10.09 55.49 0.56 -26.48 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 3.18 6.37 -3.41 -0.02 3.16 16 26 C 0.13 2.11 6.02 -2.89 -0.02 2.09 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 29 H 0.07 0.87 7.02 -51.93 -0.36 0.51 16 30 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 31 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.34 6.98 -52.49 -0.37 0.97 16 34 H 0.08 0.78 5.00 -51.93 -0.26 0.52 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.91 7.41 -51.93 -0.38 0.53 16 37 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 38 H 0.06 1.14 7.90 -51.93 -0.41 0.72 16 39 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 2.85 5.88 -51.93 -0.31 2.55 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.52 7.49 -51.93 -0.39 0.13 16 44 H 0.02 0.48 7.63 -51.93 -0.40 0.08 16 45 H 0.07 1.10 7.59 -51.93 -0.39 0.71 16 46 H 0.09 1.75 7.46 -51.93 -0.39 1.36 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -32.89 359.98 -10.23 -43.13 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.95 Total: -0.20 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.18 Total: -3.11 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.59 Total: -52.32 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.89 -10.23 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041032554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.213 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds