Wall clock time and date at job start Tue Mar 31 2020 10:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37983 * 120.07254 * 2 1 4 4 C 1.38336 * 120.14306 * 180.25295 * 3 2 1 5 5 C 1.38380 * 120.29331 * 359.74735 * 4 3 2 6 6 C 1.37935 * 120.14480 * 359.96953 * 5 4 3 7 7 C 1.39551 * 120.07379 * 179.72000 * 2 1 3 8 8 C 1.47846 * 120.14506 * 0.02562 * 7 2 1 9 9 O 1.21547 * 120.00309 * 313.42901 * 8 7 2 10 10 N 1.34782 * 119.99754 * 133.42972 * 8 7 2 11 11 C 1.48261 * 127.73524 * 354.63386 * 10 8 7 12 12 C 1.54717 * 104.66120 * 141.21208 * 11 10 8 13 13 C 1.53032 * 104.47800 * 23.66738 * 12 11 10 14 14 C 1.53879 * 111.37251 * 121.01099 * 13 12 11 15 15 C 1.55146 * 101.45201 * 154.99115 * 14 13 12 16 16 N 1.47536 * 105.06944 * 324.20825 * 15 14 13 17 17 C 1.36931 * 125.67367 * 203.96883 * 16 15 14 18 18 H 1.08000 * 120.00510 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99919 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47051 * 90.00067 * 21 19 17 23 23 H 1.48501 * 109.47330 * 209.99803 * 21 19 17 24 24 H 1.48503 * 109.47231 * 330.00263 * 21 19 17 25 25 C 1.47606 * 108.51694 * 23.93203 * 16 15 14 26 26 C 1.48449 * 127.73297 * 174.66091 * 10 8 7 27 27 H 1.08995 * 109.47078 * 264.74945 * 1 2 3 28 28 H 1.08994 * 109.47068 * 24.75373 * 1 2 3 29 29 H 1.08998 * 109.46770 * 144.75253 * 1 2 3 30 30 H 1.08004 * 119.92752 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.85156 * 179.76241 * 4 3 2 32 32 H 1.07996 * 119.92585 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.07166 * 180.02562 * 6 5 4 34 34 H 1.08996 * 110.40072 * 22.41489 * 11 10 8 35 35 H 1.09001 * 110.39594 * 260.00746 * 11 10 8 36 36 H 1.09000 * 110.43074 * 264.90863 * 12 11 10 37 37 H 1.09000 * 110.53562 * 142.46696 * 12 11 10 38 38 H 1.09007 * 111.03184 * 36.95532 * 14 13 12 39 39 H 1.08997 * 111.06360 * 273.05047 * 14 13 12 40 40 H 1.09005 * 110.33736 * 83.13452 * 15 14 13 41 41 H 1.08999 * 110.34040 * 205.28022 * 15 14 13 42 42 H 0.96995 * 120.00051 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.94094 * 238.65875 * 25 16 15 44 44 H 1.08998 * 109.95821 * 117.41569 * 25 16 15 45 45 H 1.08994 * 110.46712 * 99.67704 * 26 10 8 46 46 H 1.09007 * 110.46553 * 337.09211 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 -0.0053 6 6 3.6023 -1.1988 0.0005 7 6 2.2063 -1.2076 0.0059 8 6 1.4720 -2.4908 0.0116 9 8 0.5418 -2.6554 0.7764 10 7 1.8341 -3.4782 -0.8314 11 6 2.8594 -3.4275 -1.9011 12 6 3.5542 -4.8087 -1.8434 13 6 2.5202 -5.7302 -1.1926 14 6 2.1596 -6.9080 -2.1149 15 6 1.6877 -7.9705 -1.0875 16 7 2.5560 -7.7779 0.0896 17 6 2.8409 -8.7262 1.0354 18 1 3.4909 -8.4849 1.8636 19 6 2.2944 -9.9979 0.9299 20 7 1.5028 -10.2923 -0.0795 21 14 2.6837 -11.2918 2.2198 22 1 1.6790 -11.2207 3.3110 23 1 2.6435 -12.6393 1.5971 24 1 4.0378 -11.0439 2.7767 25 6 3.0655 -6.3927 0.0748 26 6 1.2953 -4.8599 -0.8970 27 1 -0.3633 -0.0940 1.0233 28 1 -0.3633 0.9332 -0.4303 29 1 -0.3633 -0.8393 -0.5931 30 1 1.6584 2.1294 -0.0004 31 1 4.1182 2.1332 -0.0091 32 1 5.3612 0.0101 -0.0090 33 1 4.1494 -2.1300 0.0009 34 1 3.5776 -2.6323 -1.7017 35 1 2.3877 -3.2798 -2.8726 36 1 4.4553 -4.7560 -1.2323 37 1 3.7962 -5.1572 -2.8474 38 1 3.0341 -7.2567 -2.6643 39 1 1.3534 -6.6387 -2.7973 40 1 0.6444 -7.8021 -0.8204 41 1 1.8169 -8.9738 -1.4935 42 1 1.1212 -11.1809 -0.1534 43 1 4.1553 -6.3975 0.0531 44 1 2.7127 -5.8570 0.9561 45 1 0.5638 -4.9460 -1.7004 46 1 0.8495 -5.1409 0.0573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041032554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:46 Heat of formation + Delta-G solvation = 6.690855 kcal Electronic energy + Delta-G solvation = -26524.682314 eV Core-core repulsion = 22993.082872 eV Total energy + Delta-G solvation = -3531.599442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75168 -40.42491 -39.02488 -37.25689 -34.58588 -33.68567 -32.63890 -31.74383 -30.75319 -29.52269 -28.19259 -27.35990 -26.10695 -24.22694 -23.42668 -22.56144 -22.22038 -20.57284 -20.15913 -18.91144 -18.20688 -17.38569 -16.90191 -16.84736 -16.61230 -16.09228 -15.89806 -15.57925 -15.38065 -14.96253 -14.61895 -14.50465 -14.16745 -14.12004 -13.92436 -13.63790 -13.28974 -13.22122 -13.13837 -12.98594 -12.87530 -12.73881 -12.65604 -12.53094 -12.46965 -12.02914 -11.98503 -11.84006 -11.54409 -11.45378 -11.18134 -10.95545 -10.75657 -10.00410 -9.73768 -9.65239 -8.90723 -7.79440 -5.23856 -0.00951 0.39387 1.43357 1.45840 1.54349 1.63998 1.86737 2.47123 2.77864 3.26601 3.37614 3.55185 3.63119 3.71072 3.82775 3.86668 3.92275 4.15324 4.22818 4.27405 4.36647 4.38733 4.49208 4.57867 4.63810 4.66975 4.67395 4.72322 4.74082 4.78996 4.86988 4.90447 5.00312 5.05702 5.06297 5.14499 5.21166 5.33047 5.37774 5.39674 5.43047 5.51754 5.54775 5.64454 5.81660 5.98230 6.29776 6.48157 7.00464 7.09166 7.75580 8.40222 9.22041 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.003080 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.781791 B = 9088.976140 C = 9147.857663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.055 4.055 3 C -0.126 4.126 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.092 4.092 7 C -0.148 4.148 8 C 0.571 3.429 9 O -0.585 6.585 10 N -0.617 5.617 11 C 0.097 3.903 12 C -0.110 4.110 13 C -0.072 4.072 14 C -0.111 4.111 15 C 0.152 3.848 16 N -0.627 5.627 17 C -0.242 4.242 18 H 0.075 0.925 19 C -0.066 4.066 20 N -0.947 5.947 21 Si 0.980 3.020 22 H -0.291 1.291 23 H -0.288 1.288 24 H -0.269 1.269 25 C 0.150 3.850 26 C 0.129 3.871 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.089 0.911 40 H -0.022 1.022 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.035 0.965 44 H -0.003 1.003 45 H 0.084 0.916 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 25.230 -8.185 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.145 4.145 6 C -0.110 4.110 7 C -0.151 4.151 8 C 0.362 3.638 9 O -0.466 6.466 10 N -0.349 5.349 11 C -0.024 4.024 12 C -0.148 4.148 13 C -0.074 4.074 14 C -0.150 4.150 15 C 0.027 3.973 16 N -0.353 5.353 17 C -0.371 4.371 18 H 0.093 0.907 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.218 1.218 23 H -0.214 1.214 24 H -0.193 1.193 25 C 0.025 3.975 26 C 0.006 3.994 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.171 0.829 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.107 0.893 40 H -0.004 1.004 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.102 0.898 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.285 25.015 -7.670 26.908 hybrid contribution -0.560 -1.518 1.249 2.044 sum 5.725 23.497 -6.421 25.022 Atomic orbital electron populations 1.20782 0.90892 1.02788 1.02294 1.20125 0.96534 0.92231 0.96713 1.21323 0.95102 0.97118 1.00824 1.21755 0.93869 0.99526 0.95593 1.21452 1.01631 0.91342 1.00029 1.21447 0.91695 1.00147 0.97746 1.19703 0.94855 0.91589 1.08944 1.18535 0.82689 0.83739 0.78846 1.90760 1.31476 1.82271 1.42051 1.49153 1.40049 1.11361 1.34326 1.22909 0.90340 0.98854 0.90296 1.22494 0.96892 0.92577 1.02872 1.21460 0.95452 0.95002 0.95464 1.22834 1.01818 0.93903 0.96438 1.21809 0.90141 0.99137 0.86243 1.44996 1.55229 1.08016 1.27054 1.19423 1.23955 0.91177 1.02553 0.90716 1.25615 0.99857 0.99569 1.00772 1.70049 1.37055 1.20367 1.32180 0.85062 0.77974 0.78253 0.77942 1.21814 1.21436 1.19339 1.21412 0.96379 0.84837 0.94882 1.22116 0.95939 0.80363 1.00972 0.91742 0.88770 0.93708 0.82929 0.82210 0.82557 0.84925 0.87764 0.88770 0.90087 0.87104 0.90065 0.89252 1.00394 0.90826 0.94269 0.94664 0.98528 0.89756 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 8.82 71.24 0.63 -1.85 16 2 C -0.06 -1.22 5.91 -19.61 -0.12 -1.33 16 3 C -0.13 -1.88 9.67 22.23 0.21 -1.66 16 4 C -0.09 -1.05 10.04 22.33 0.22 -0.82 16 5 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 6 C -0.09 -1.78 7.81 22.53 0.18 -1.61 16 7 C -0.15 -3.76 5.40 -20.09 -0.11 -3.87 16 8 C 0.57 18.93 6.61 86.79 0.57 19.50 16 9 O -0.58 -24.65 15.93 -3.86 -0.06 -24.71 16 10 N -0.62 -18.21 3.33 -812.03 -2.70 -20.91 16 11 C 0.10 1.92 6.66 86.63 0.58 2.49 16 12 C -0.11 -2.41 6.31 31.19 0.20 -2.21 16 13 C -0.07 -2.37 0.79 -51.81 -0.04 -2.41 16 14 C -0.11 -3.88 5.90 31.63 0.19 -3.69 16 15 C 0.15 7.58 5.81 86.92 0.50 8.09 16 16 N -0.63 -33.62 3.42 -692.21 -2.37 -35.98 16 17 C -0.24 -14.20 10.29 84.03 0.86 -13.33 16 18 H 0.07 4.26 7.83 -2.91 -0.02 4.23 16 19 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 20 N -0.95 -57.68 10.09 21.65 0.22 -57.47 16 21 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 C 0.15 6.48 6.37 86.18 0.55 7.03 16 26 C 0.13 4.43 6.02 86.05 0.52 4.95 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 29 H 0.04 1.19 7.02 -2.39 -0.02 1.18 16 30 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.13 2.42 6.98 -2.91 -0.02 2.40 16 34 H 0.10 1.64 5.00 -2.39 -0.01 1.62 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.72 7.41 -2.39 -0.02 1.70 16 37 H 0.11 1.89 7.62 -2.39 -0.02 1.87 16 38 H 0.08 2.62 7.90 -2.38 -0.02 2.60 16 39 H 0.09 2.63 7.65 -2.39 -0.02 2.61 16 40 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 41 H 0.07 4.17 5.88 -2.39 -0.01 4.15 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.04 1.45 7.49 -2.39 -0.02 1.43 16 44 H 0.00 -0.16 7.63 -2.39 -0.02 -0.17 16 45 H 0.08 2.64 7.59 -2.39 -0.02 2.63 16 46 H 0.04 1.76 7.46 -2.38 -0.02 1.74 16 Total: -1.00 -78.59 359.98 3.73 -74.87 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.97 Total: 10.66 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.64 Total: 4.41 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.85 Total: -114.36 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.59 3.73 -74.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041032554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.557 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds