Wall clock time and date at job start Tue Mar 31 2020 10:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38378 * 119.92766 * 2 1 4 4 C 1.38347 * 120.29043 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14361 * 0.02562 * 4 3 2 6 6 C 1.39548 * 119.85596 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.14630 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00171 * 229.95993 * 7 6 5 9 9 N 1.34774 * 119.99793 * 49.95668 * 7 6 5 10 10 C 1.46600 * 119.75658 * 356.24488 * 9 7 6 11 11 C 1.53881 * 110.68362 * 132.27436 * 10 9 7 12 12 C 1.51921 * 107.33644 * 51.81528 * 11 10 9 13 13 H 1.09002 * 111.55161 * 56.84689 * 12 11 10 14 14 C 1.53704 * 115.02015 * 184.56296 * 12 11 10 15 15 C 1.55294 * 101.81253 * 153.45618 * 14 12 11 16 16 N 1.48163 * 107.04548 * 337.55914 * 15 14 12 17 17 C 1.36938 * 126.39914 * 175.03428 * 16 15 14 18 18 H 1.07996 * 119.99984 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99870 * 359.95229 * 17 16 15 20 20 N 1.31617 * 120.00172 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99670 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47368 * 60.00251 * 21 19 17 23 23 H 1.48509 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47156 * 299.99997 * 21 19 17 25 25 C 1.45507 * 107.20237 * 354.99567 * 16 15 14 26 26 H 1.09006 * 109.56448 * 274.15989 * 25 16 15 27 27 C 1.47801 * 119.75511 * 176.26296 * 9 7 6 28 28 C 1.37935 * 119.92672 * 180.23616 * 2 1 3 29 29 H 1.09007 * 109.47530 * 89.99597 * 1 2 3 30 30 H 1.09000 * 109.47551 * 209.99756 * 1 2 3 31 31 H 1.09007 * 109.47184 * 330.00098 * 1 2 3 32 32 H 1.07995 * 119.85631 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.92323 * 180.02562 * 4 3 2 34 34 H 1.08008 * 120.06690 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.23010 * 252.57457 * 10 9 7 36 36 H 1.09005 * 109.22457 * 11.97938 * 10 9 7 37 37 H 1.08998 * 109.89477 * 171.23727 * 11 10 9 38 38 H 1.09009 * 109.89293 * 292.34432 * 11 10 9 39 39 H 1.09000 * 110.95991 * 35.32830 * 14 12 11 40 40 H 1.08998 * 110.98898 * 271.60232 * 14 12 11 41 41 H 1.08994 * 109.92349 * 218.20731 * 15 14 12 42 42 H 1.09003 * 110.08817 * 96.99768 * 15 14 12 43 43 H 0.96994 * 120.00027 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.06434 * 350.47723 * 27 9 7 45 45 H 1.09003 * 110.06141 * 112.04125 * 27 9 7 46 46 H 1.08004 * 120.07795 * 0.04528 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2811 0.0192 0.0005 6 6 3.5911 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0000 8 8 4.0555 -3.3371 -0.8060 9 7 5.3235 -2.6758 0.8931 10 6 5.7119 -1.5982 1.8081 11 6 5.8133 -2.1212 3.2517 12 6 6.7103 -3.3471 3.2272 13 1 7.6886 -3.1191 2.8041 14 6 6.8456 -4.0806 4.5711 15 6 7.1689 -5.5284 4.1119 16 7 6.6704 -5.6653 2.7234 17 6 6.8339 -6.7506 1.9045 18 1 6.4246 -6.7395 0.9052 19 6 7.5260 -7.8649 2.3589 20 7 8.0246 -7.8784 3.5769 21 14 7.7496 -9.3450 1.2416 22 1 8.4895 -8.9364 0.0207 23 1 8.5176 -10.3947 1.9584 24 1 6.4189 -9.8811 0.8579 25 6 5.9738 -4.4313 2.3927 26 1 4.9395 -4.4941 2.7311 27 6 6.0081 -3.9848 0.9426 28 6 2.1951 -1.1954 -0.0049 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6538 2.1325 -0.0004 33 1 4.1135 2.1474 0.0009 34 1 5.3612 0.0275 0.0005 35 1 6.6787 -1.1987 1.5022 36 1 4.9658 -0.8047 1.7653 37 1 6.2499 -1.3560 3.8936 38 1 4.8234 -2.3932 3.6181 39 1 5.9096 -4.0484 5.1289 40 1 7.6633 -3.6668 5.1611 41 1 6.6644 -6.2450 4.7599 42 1 8.2454 -5.6980 4.1383 43 1 8.5079 -8.6571 3.8945 44 1 5.4822 -4.7058 0.3167 45 1 7.0402 -3.8799 0.6079 46 1 1.6551 -2.1308 -0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041912356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:42 Heat of formation + Delta-G solvation = 22.337521 kcal Electronic energy + Delta-G solvation = -26599.461031 eV Core-core repulsion = 23068.540079 eV Total energy + Delta-G solvation = -3530.920952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61671 -39.11122 -37.92392 -35.42531 -33.22318 -32.80733 -31.49095 -31.13561 -29.29617 -28.49489 -27.10450 -24.94489 -24.44992 -22.76783 -22.34361 -21.74544 -20.15374 -19.72402 -19.03321 -17.12723 -16.62078 -16.44571 -15.95174 -15.55630 -14.92131 -14.60302 -14.43595 -14.29374 -13.99897 -13.90551 -13.62329 -13.41573 -13.15632 -12.93239 -12.69219 -12.46952 -12.30401 -12.06088 -11.95392 -11.73660 -11.49687 -11.33277 -11.21742 -10.91678 -10.79329 -10.72070 -10.16307 -9.97370 -9.86614 -9.76143 -9.61041 -9.48183 -9.11102 -8.82417 -8.61048 -8.41985 -6.84523 -5.70470 -3.04268 0.85389 1.13375 2.77672 3.09609 3.44061 3.47940 3.49725 3.57934 4.42165 4.52348 4.56865 4.64523 4.83480 4.94923 4.98760 5.05230 5.12062 5.17387 5.34732 5.36431 5.41302 5.51634 5.53247 5.62889 5.70264 5.73097 5.78775 5.84822 5.91554 6.03488 6.08270 6.13251 6.15358 6.17875 6.19600 6.30777 6.38750 6.49416 6.57504 6.67081 6.73649 6.76599 7.06484 7.54591 7.56666 7.62411 7.82439 8.24092 8.29556 9.20478 9.83368 10.50078 11.41800 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003460 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.499114 B = 8090.055333 C = 8849.658869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.106 4.106 4 C -0.122 4.122 5 C -0.098 4.098 6 C -0.113 4.113 7 C 0.553 3.447 8 O -0.535 6.535 9 N -0.598 5.598 10 C 0.099 3.901 11 C -0.119 4.119 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.592 5.592 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.157 3.843 26 H 0.023 0.977 27 C 0.117 3.883 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 21.219 -2.363 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.116 4.116 7 C 0.340 3.660 8 O -0.413 6.413 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.157 4.157 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.317 5.317 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.048 3.952 26 H 0.041 0.959 27 C -0.005 4.005 28 C -0.091 4.091 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.326 20.481 -2.764 22.673 hybrid contribution 0.279 -0.811 -0.458 0.973 sum -9.046 19.670 -3.223 21.889 Atomic orbital electron populations 1.20802 0.90762 1.02993 1.02551 1.19869 0.96372 0.92774 1.00114 1.21178 0.94297 0.97516 0.99419 1.21069 0.94234 0.97867 1.00786 1.21334 1.00195 0.91428 0.98649 1.19964 0.94356 0.93441 1.03817 1.18418 0.79642 0.86728 0.81177 1.90796 1.66842 1.45107 1.38539 1.48219 1.35401 1.14824 1.34597 1.22035 1.00735 0.89526 0.90054 1.21789 1.00631 0.98228 0.95098 1.22277 0.98634 0.94310 0.98151 0.90450 1.22722 1.00290 0.98914 0.95669 1.21546 0.99174 0.89439 0.84546 1.44167 1.63537 1.11836 1.12149 1.19009 1.29718 0.91792 0.95226 0.90314 1.24780 1.00361 0.98289 0.96779 1.69930 1.41242 1.29701 1.16065 0.86218 0.77788 0.82329 0.79585 1.21080 1.21626 1.21102 1.20979 0.95065 0.87335 0.91861 0.95947 1.21755 0.96931 0.82407 0.99401 1.21065 0.92385 0.98308 0.97331 0.90994 0.91266 0.91407 0.85801 0.85441 0.85260 0.91640 0.89424 0.90863 0.91423 0.92584 0.92224 0.94478 0.92569 0.93711 0.88952 0.90995 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.88 5.87 -104.69 -0.61 -1.50 16 3 C -0.11 -0.89 9.69 -39.49 -0.38 -1.27 16 4 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 5 C -0.10 -1.02 7.37 -39.19 -0.29 -1.31 16 6 C -0.11 -1.50 4.94 -104.97 -0.52 -2.01 16 7 C 0.55 9.32 7.23 -12.33 -0.09 9.23 16 8 O -0.54 -11.13 16.42 5.32 0.09 -11.04 16 9 N -0.60 -9.61 3.01 -173.85 -0.52 -10.13 16 10 C 0.10 1.23 5.07 -3.53 -0.02 1.21 16 11 C -0.12 -1.56 5.71 -26.82 -0.15 -1.71 16 12 C -0.11 -1.94 2.61 -89.54 -0.23 -2.17 16 13 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 14 C -0.14 -2.51 6.54 -25.15 -0.16 -2.67 16 15 C 0.18 4.26 5.46 -1.91 -0.01 4.25 16 16 N -0.59 -15.04 3.35 -162.91 -0.55 -15.59 16 17 C -0.23 -6.41 9.88 -15.06 -0.15 -6.56 16 18 H 0.08 2.16 7.41 -52.49 -0.39 1.77 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -27.12 10.43 55.49 0.58 -26.54 16 21 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.16 3.26 2.77 -67.83 -0.19 3.07 16 26 H 0.02 0.51 7.90 -51.93 -0.41 0.10 16 27 C 0.12 2.28 5.68 -3.95 -0.02 2.26 16 28 C -0.07 -0.88 9.38 -39.18 -0.37 -1.25 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 1.19 7.00 -52.48 -0.37 0.83 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.93 4.68 -51.93 -0.24 0.69 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.93 7.97 -51.92 -0.41 0.51 16 39 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 42 H 0.06 1.49 7.19 -51.93 -0.37 1.12 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.09 2.03 6.78 -51.93 -0.35 1.67 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -32.68 360.14 -10.49 -43.17 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.15 Total: -0.17 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.33 Total: -2.59 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.49 Total: -52.26 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.68 -10.49 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041912356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.505 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds