Wall clock time and date at job start Tue Mar 31 2020 10:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38378 * 119.92766 * 2 1 4 4 C 1.38347 * 120.29043 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14361 * 0.02562 * 4 3 2 6 6 C 1.39548 * 119.85596 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.14630 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00171 * 229.95993 * 7 6 5 9 9 N 1.34774 * 119.99793 * 49.95668 * 7 6 5 10 10 C 1.46600 * 119.75658 * 356.24488 * 9 7 6 11 11 C 1.53881 * 110.68362 * 132.27436 * 10 9 7 12 12 C 1.51921 * 107.33644 * 51.81528 * 11 10 9 13 13 H 1.09002 * 111.55161 * 56.84689 * 12 11 10 14 14 C 1.53704 * 115.02015 * 184.56296 * 12 11 10 15 15 C 1.55294 * 101.81253 * 153.45618 * 14 12 11 16 16 N 1.48163 * 107.04548 * 337.55914 * 15 14 12 17 17 C 1.36938 * 126.39914 * 175.03428 * 16 15 14 18 18 H 1.07996 * 119.99984 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99870 * 359.95229 * 17 16 15 20 20 N 1.31617 * 120.00172 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99670 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47368 * 60.00251 * 21 19 17 23 23 H 1.48509 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47156 * 299.99997 * 21 19 17 25 25 C 1.45507 * 107.20237 * 354.99567 * 16 15 14 26 26 H 1.09006 * 109.56448 * 274.15989 * 25 16 15 27 27 C 1.47801 * 119.75511 * 176.26296 * 9 7 6 28 28 C 1.37935 * 119.92672 * 180.23616 * 2 1 3 29 29 H 1.09007 * 109.47530 * 89.99597 * 1 2 3 30 30 H 1.09000 * 109.47551 * 209.99756 * 1 2 3 31 31 H 1.09007 * 109.47184 * 330.00098 * 1 2 3 32 32 H 1.07995 * 119.85631 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.92323 * 180.02562 * 4 3 2 34 34 H 1.08008 * 120.06690 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.23010 * 252.57457 * 10 9 7 36 36 H 1.09005 * 109.22457 * 11.97938 * 10 9 7 37 37 H 1.08998 * 109.89477 * 171.23727 * 11 10 9 38 38 H 1.09009 * 109.89293 * 292.34432 * 11 10 9 39 39 H 1.09000 * 110.95991 * 35.32830 * 14 12 11 40 40 H 1.08998 * 110.98898 * 271.60232 * 14 12 11 41 41 H 1.08994 * 109.92349 * 218.20731 * 15 14 12 42 42 H 1.09003 * 110.08817 * 96.99768 * 15 14 12 43 43 H 0.96994 * 120.00027 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.06434 * 350.47723 * 27 9 7 45 45 H 1.09003 * 110.06141 * 112.04125 * 27 9 7 46 46 H 1.08004 * 120.07795 * 0.04528 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2811 0.0192 0.0005 6 6 3.5911 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0000 8 8 4.0555 -3.3371 -0.8060 9 7 5.3235 -2.6758 0.8931 10 6 5.7119 -1.5982 1.8081 11 6 5.8133 -2.1212 3.2517 12 6 6.7103 -3.3471 3.2272 13 1 7.6886 -3.1191 2.8041 14 6 6.8456 -4.0806 4.5711 15 6 7.1689 -5.5284 4.1119 16 7 6.6704 -5.6653 2.7234 17 6 6.8339 -6.7506 1.9045 18 1 6.4246 -6.7395 0.9052 19 6 7.5260 -7.8649 2.3589 20 7 8.0246 -7.8784 3.5769 21 14 7.7496 -9.3450 1.2416 22 1 8.4895 -8.9364 0.0207 23 1 8.5176 -10.3947 1.9584 24 1 6.4189 -9.8811 0.8579 25 6 5.9738 -4.4313 2.3927 26 1 4.9395 -4.4941 2.7311 27 6 6.0081 -3.9848 0.9426 28 6 2.1951 -1.1954 -0.0049 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6538 2.1325 -0.0004 33 1 4.1135 2.1474 0.0009 34 1 5.3612 0.0275 0.0005 35 1 6.6787 -1.1987 1.5022 36 1 4.9658 -0.8047 1.7653 37 1 6.2499 -1.3560 3.8936 38 1 4.8234 -2.3932 3.6181 39 1 5.9096 -4.0484 5.1289 40 1 7.6633 -3.6668 5.1611 41 1 6.6644 -6.2450 4.7599 42 1 8.2454 -5.6980 4.1383 43 1 8.5079 -8.6571 3.8945 44 1 5.4822 -4.7058 0.3167 45 1 7.0402 -3.8799 0.6079 46 1 1.6551 -2.1308 -0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041912356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:42 Heat of formation + Delta-G solvation = 3.088025 kcal Electronic energy + Delta-G solvation = -26600.295751 eV Core-core repulsion = 23068.540079 eV Total energy + Delta-G solvation = -3531.755673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82543 -40.28255 -39.22008 -36.94845 -34.75054 -33.88580 -32.91225 -32.26861 -30.77375 -30.16312 -27.80820 -26.58971 -26.03952 -23.88277 -23.66080 -22.59139 -21.83040 -21.27989 -20.25869 -18.71344 -18.05232 -17.50141 -17.07142 -16.83229 -16.65438 -15.94895 -15.73452 -15.66253 -15.37915 -14.92751 -14.69223 -14.59644 -14.39265 -14.15238 -13.88494 -13.85349 -13.57347 -13.20817 -13.13349 -13.03600 -12.86710 -12.71824 -12.60959 -12.46248 -12.14896 -12.05327 -11.98709 -11.79458 -11.56616 -11.38446 -11.06428 -10.98187 -10.75085 -9.95715 -9.74190 -9.58028 -8.94197 -7.89158 -5.24380 0.01623 0.38964 1.41385 1.44246 1.50448 1.54593 1.87674 2.46867 2.76072 3.28651 3.35483 3.50326 3.76362 3.88452 3.92042 3.96097 3.98914 4.16413 4.23445 4.26560 4.27405 4.40149 4.43998 4.50482 4.59257 4.66418 4.73648 4.79046 4.83568 4.87569 4.88802 4.92690 4.98654 5.08105 5.12688 5.19933 5.27982 5.34192 5.38912 5.44135 5.46616 5.56618 5.60439 5.64126 5.76077 5.98852 6.16358 6.30935 6.99640 7.05320 7.73269 8.40233 9.21494 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003460 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.499114 B = 8090.055333 C = 8849.658869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.097 4.097 4 C -0.111 4.111 5 C -0.098 4.098 6 C -0.135 4.135 7 C 0.548 3.452 8 O -0.591 6.591 9 N -0.595 5.595 10 C 0.095 3.905 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.079 0.921 14 C -0.121 4.121 15 C 0.180 3.820 16 N -0.613 5.613 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.148 3.852 26 H 0.004 0.996 27 C 0.129 3.871 28 C -0.096 4.096 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.089 0.911 41 H -0.001 1.001 42 H 0.025 0.975 43 H 0.248 0.752 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 25.924 -2.117 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.337 3.663 8 O -0.473 6.473 9 N -0.327 5.327 10 C -0.026 4.026 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.097 0.903 14 C -0.159 4.159 15 C 0.056 3.944 16 N -0.338 5.338 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.800 3.200 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.209 1.209 25 C 0.040 3.960 26 H 0.022 0.978 27 C 0.006 3.994 28 C -0.115 4.115 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.017 0.983 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.715 25.246 -2.503 27.167 hybrid contribution 0.308 -2.225 -0.555 2.314 sum -9.408 23.021 -3.058 25.057 Atomic orbital electron populations 1.20862 0.89185 1.03857 1.03212 1.20145 0.97624 0.92296 0.99298 1.21637 0.94656 0.98099 0.97093 1.21491 0.94402 0.98345 0.98614 1.21512 1.00982 0.90840 0.98349 1.19729 0.94448 0.92427 1.07198 1.19150 0.79271 0.87657 0.80180 1.90752 1.68319 1.47406 1.40813 1.48275 1.34952 1.14203 1.35235 1.22389 1.02855 0.88657 0.88697 1.21793 0.99519 0.97124 0.96346 1.22212 0.98975 0.94526 0.95876 0.90270 1.22600 1.01959 0.94702 0.96676 1.21376 0.96668 0.92741 0.83624 1.44440 1.63796 1.12951 1.12651 1.19270 1.29237 0.93096 0.95453 0.90915 1.25556 1.00662 1.00865 0.98234 1.70134 1.41976 1.30028 1.17431 0.85252 0.77608 0.79077 0.78032 1.20252 1.21425 1.20906 1.21104 0.94101 0.87233 0.93523 0.97839 1.21322 0.96502 0.83890 0.97733 1.21076 0.92312 0.98883 0.99192 0.90373 0.91879 0.89113 0.82376 0.81781 0.83850 0.89110 0.86803 0.86513 0.91973 0.91317 0.89270 0.98315 0.95677 0.94250 0.92730 0.91239 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.23 0.71 -0.66 16 2 C -0.09 -1.59 5.87 -19.91 -0.12 -1.71 16 3 C -0.10 -1.18 9.69 22.33 0.22 -0.96 16 4 C -0.11 -1.32 10.03 22.23 0.22 -1.10 16 5 C -0.10 -1.73 7.37 22.52 0.17 -1.56 16 6 C -0.14 -3.49 4.94 -20.09 -0.10 -3.59 16 7 C 0.55 19.06 7.23 86.79 0.63 19.69 16 8 O -0.59 -26.46 16.42 -3.89 -0.06 -26.52 16 9 N -0.60 -19.15 3.01 -822.22 -2.47 -21.63 16 10 C 0.09 2.04 5.07 86.66 0.44 2.48 16 11 C -0.11 -2.47 5.71 30.54 0.17 -2.30 16 12 C -0.10 -3.12 2.61 -10.09 -0.03 -3.15 16 13 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 14 C -0.12 -4.27 6.54 31.62 0.21 -4.06 16 15 C 0.18 9.02 5.46 86.85 0.47 9.50 16 16 N -0.61 -32.68 3.35 -669.32 -2.24 -34.92 16 17 C -0.24 -14.21 9.88 84.03 0.83 -13.38 16 18 H 0.07 4.24 7.41 -2.91 -0.02 4.22 16 19 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 20 N -0.95 -58.17 10.43 21.65 0.23 -57.95 16 21 Si 0.97 47.93 29.55 68.60 2.03 49.96 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.15 6.37 2.77 45.59 0.13 6.50 16 26 H 0.00 0.19 7.90 -2.38 -0.02 0.17 16 27 C 0.13 5.26 5.68 85.73 0.49 5.75 16 28 C -0.10 -2.33 9.38 22.53 0.21 -2.12 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.09 0.68 8.08 -2.38 -0.02 0.66 16 32 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.14 2.06 7.00 -2.91 -0.02 2.04 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 1.95 4.68 -2.38 -0.01 1.94 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.52 7.97 -2.38 -0.02 1.50 16 39 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.00 -0.08 7.77 -2.39 -0.02 -0.10 16 42 H 0.02 1.39 7.19 -2.39 -0.02 1.37 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.05 2.61 6.78 -2.39 -0.02 2.59 16 45 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -78.94 360.14 3.55 -75.39 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.96 Total: 9.40 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.12 Total: 6.26 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.49 Total: -114.49 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -78.94 3.55 -75.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041912356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.477 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds