Wall clock time and date at job start Tue Mar 31 2020 10:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38390 * 119.92720 * 2 1 4 4 C 1.38334 * 120.29157 * 179.97438 * 3 2 1 5 5 C 1.37981 * 120.14770 * 0.04364 * 4 3 2 6 6 C 1.39552 * 119.85352 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.14889 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00501 * 217.38951 * 7 6 5 9 9 N 1.34776 * 119.99970 * 37.37904 * 7 6 5 10 10 C 1.44476 * 117.13497 * 5.57444 * 9 7 6 11 11 C 1.50979 * 113.13554 * 148.27462 * 10 9 7 12 12 C 1.48605 * 116.02646 * 32.07219 * 11 10 9 13 13 H 1.08998 * 105.77658 * 206.02608 * 12 11 10 14 14 C 1.53319 * 114.95817 * 90.58289 * 12 11 10 15 15 C 1.54519 * 102.38728 * 196.30911 * 14 12 11 16 16 N 1.46885 * 106.66156 * 27.58583 * 15 14 12 17 17 C 1.36943 * 125.35677 * 164.88634 * 16 15 14 18 18 H 1.08004 * 119.99719 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00441 * 0.02582 * 17 16 15 20 20 N 1.31621 * 119.99477 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00371 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46786 * 89.99748 * 21 19 17 23 23 H 1.48500 * 109.47309 * 209.99707 * 21 19 17 24 24 H 1.48500 * 109.47178 * 330.00290 * 21 19 17 25 25 C 1.48176 * 109.28293 * 344.86262 * 16 15 14 26 26 H 1.08995 * 109.74730 * 237.27337 * 25 16 15 27 27 C 1.43930 * 117.14098 * 185.30867 * 9 7 6 28 28 C 1.37934 * 119.93209 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46698 * 269.97812 * 1 2 3 30 30 H 1.08995 * 109.47390 * 29.97389 * 1 2 3 31 31 H 1.08995 * 109.47339 * 149.98030 * 1 2 3 32 32 H 1.07997 * 119.84920 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.92588 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.07371 * 180.02562 * 5 4 3 35 35 H 1.08999 * 108.75205 * 269.21746 * 10 9 7 36 36 H 1.09005 * 108.74996 * 27.32866 * 10 9 7 37 37 H 1.09004 * 108.17272 * 153.77653 * 11 10 9 38 38 H 1.09001 * 108.17161 * 270.58056 * 11 10 9 39 39 H 1.09000 * 110.82550 * 314.52938 * 14 12 11 40 40 H 1.09000 * 110.82778 * 77.88788 * 14 12 11 41 41 H 1.08995 * 110.02354 * 146.89329 * 15 14 12 42 42 H 1.09004 * 110.02108 * 268.24122 * 15 14 12 43 43 H 0.97001 * 119.99667 * 179.97438 * 20 19 17 44 44 H 1.09003 * 108.42294 * 332.80237 * 27 9 7 45 45 H 1.09000 * 108.41779 * 90.04062 * 27 9 7 46 46 H 1.08002 * 120.06849 * 0.28204 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0194 0.0002 6 6 3.5912 -1.1935 -0.0002 7 6 4.3352 -2.4711 -0.0012 8 8 3.9182 -3.4169 -0.6407 9 7 5.4761 -2.5870 0.7069 10 6 5.8502 -1.4685 1.5415 11 6 6.5960 -1.8815 2.7875 12 6 7.4528 -3.0894 2.6645 13 1 7.5212 -3.5078 3.6687 14 6 8.9023 -2.8147 2.2473 15 6 9.3892 -4.2115 1.8007 16 7 8.2022 -4.9436 1.3394 17 6 8.2198 -6.0940 0.5967 18 1 7.2914 -6.5615 0.3032 19 6 9.4306 -6.6594 0.2212 20 7 10.5619 -6.0894 0.5785 21 14 9.4545 -8.2283 -0.7924 22 1 9.4507 -7.8843 -2.2370 23 1 10.6782 -9.0061 -0.4719 24 1 8.2534 -9.0416 -0.4741 25 6 6.9830 -4.2416 1.8044 26 1 6.3718 -4.9201 2.3995 27 6 6.2119 -3.8164 0.5699 28 6 2.1952 -1.1954 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6537 2.1325 -0.0004 33 1 4.1135 2.1476 0.0009 34 1 5.3612 0.0277 0.0010 35 1 6.4817 -0.7949 0.9622 36 1 4.9473 -0.9328 1.8348 37 1 7.2260 -1.0481 3.0986 38 1 5.8657 -2.0652 3.5756 39 1 8.9397 -2.1080 1.4183 40 1 9.4861 -2.4494 3.0922 41 1 10.1072 -4.1138 0.9865 42 1 9.8471 -4.7334 2.6410 43 1 11.4080 -6.4847 0.3164 44 1 5.5113 -4.6100 0.3099 45 1 6.9195 -3.7045 -0.2517 46 1 1.6552 -2.1307 -0.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041912357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:47 Heat of formation + Delta-G solvation = 29.514851 kcal Electronic energy + Delta-G solvation = -26669.368650 eV Core-core repulsion = 23138.758930 eV Total energy + Delta-G solvation = -3530.609720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80066 -39.12318 -37.97438 -35.57972 -33.31257 -33.02351 -31.68015 -31.22144 -29.36243 -28.63421 -27.08710 -25.21877 -24.58398 -22.83651 -22.76478 -21.78554 -20.39405 -19.73735 -17.82284 -17.05221 -16.90699 -16.38744 -15.95944 -15.58530 -15.05097 -14.84417 -14.65683 -14.48491 -14.03004 -13.91885 -13.75083 -13.39425 -13.34958 -12.74985 -12.48457 -12.47170 -12.29712 -12.12659 -11.77025 -11.73984 -11.46728 -11.36303 -11.27828 -10.98718 -10.79472 -10.69886 -10.09368 -9.95384 -9.91391 -9.70304 -9.59240 -9.52528 -9.08981 -8.81808 -8.61352 -8.19225 -6.88924 -5.68612 -3.06878 0.83304 1.17025 2.85003 3.25565 3.42729 3.48021 3.49812 3.66462 4.46464 4.49433 4.57425 4.66967 4.83269 4.93284 4.95638 5.06349 5.09683 5.19758 5.33190 5.34982 5.39463 5.48240 5.54161 5.58718 5.60175 5.74895 5.80994 5.84245 5.92513 5.99631 6.06836 6.17686 6.19321 6.22098 6.27301 6.33286 6.49809 6.59225 6.59895 6.71791 6.87011 6.97210 7.09333 7.54339 7.58397 7.66956 7.84885 8.29054 8.38188 9.22158 9.80981 10.44194 11.38817 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.003477 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.692072 B = 8050.751152 C = 8946.043475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.103 4.103 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.118 4.118 7 C 0.542 3.458 8 O -0.535 6.535 9 N -0.582 5.582 10 C 0.111 3.889 11 C -0.109 4.109 12 C -0.093 4.093 13 H 0.056 0.944 14 C -0.136 4.136 15 C 0.167 3.833 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.166 3.834 26 H 0.041 0.959 27 C 0.101 3.899 28 C -0.069 4.069 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.020 0.980 43 H 0.252 0.748 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 17.761 3.461 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.142 4.142 5 C -0.117 4.117 6 C -0.121 4.121 7 C 0.329 3.671 8 O -0.413 6.413 9 N -0.314 5.314 10 C -0.012 4.012 11 C -0.147 4.147 12 C -0.113 4.113 13 H 0.075 0.925 14 C -0.175 4.175 15 C 0.042 3.958 16 N -0.320 5.320 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.058 3.942 26 H 0.059 0.941 27 C -0.023 4.023 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.200 17.041 3.089 22.396 hybrid contribution 0.209 -0.824 -0.436 0.955 sum -13.991 16.217 2.653 21.582 Atomic orbital electron populations 1.20790 0.90824 1.02969 1.02451 1.19871 0.96332 0.92820 1.00576 1.21195 0.94342 0.97490 0.99142 1.21090 0.94193 0.97958 1.00966 1.21674 1.00838 0.91469 0.97714 1.19998 0.94305 0.93440 1.04390 1.18568 0.80715 0.87452 0.80338 1.90773 1.67721 1.39553 1.43282 1.46701 1.23410 1.17546 1.43696 1.21046 0.99620 0.88345 0.92170 1.20364 0.98746 0.98612 0.96983 1.20069 0.95925 0.94731 1.00527 0.92532 1.22666 0.94270 1.00711 0.99813 1.21408 0.89763 0.85948 0.98681 1.44774 0.99005 1.26597 1.61670 1.19076 0.92930 0.98658 1.24832 0.90336 1.24783 0.95269 0.99337 1.00908 1.69934 0.96577 1.40280 1.50157 0.86100 0.76960 0.82652 0.79990 1.21518 1.21698 1.20618 1.20249 0.89904 0.92124 0.91929 0.94092 1.21622 0.95585 0.84288 1.00850 1.21101 0.92518 0.98246 0.96871 0.91067 0.91458 0.91313 0.85853 0.85448 0.84621 0.92369 0.90148 0.90567 0.92125 0.92601 0.92135 0.89915 0.96201 0.93777 0.90394 0.91251 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.10 -0.93 5.87 -104.68 -0.61 -1.55 16 3 C -0.10 -0.89 9.69 -39.49 -0.38 -1.27 16 4 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 5 C -0.10 -1.08 7.58 -39.19 -0.30 -1.38 16 6 C -0.12 -1.60 4.94 -104.97 -0.52 -2.12 16 7 C 0.54 9.33 7.24 -12.33 -0.09 9.24 16 8 O -0.54 -11.25 16.04 5.32 0.09 -11.17 16 9 N -0.58 -9.70 3.13 -180.46 -0.57 -10.27 16 10 C 0.11 1.42 4.74 -6.14 -0.03 1.39 16 11 C -0.11 -1.39 5.55 -29.89 -0.17 -1.55 16 12 C -0.09 -1.57 2.32 -93.48 -0.22 -1.79 16 13 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 14 C -0.14 -2.45 6.47 -25.77 -0.17 -2.62 16 15 C 0.17 3.98 5.53 -3.03 -0.02 3.96 16 16 N -0.60 -14.99 2.91 -164.92 -0.48 -15.47 16 17 C -0.23 -6.31 9.82 -15.06 -0.15 -6.46 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 20 N -0.92 -26.88 10.23 55.49 0.57 -26.32 16 21 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.17 3.44 3.53 -68.57 -0.24 3.19 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 C 0.10 2.04 5.43 -6.09 -0.03 2.01 16 28 C -0.07 -0.84 9.27 -39.18 -0.36 -1.20 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.14 1.37 5.44 -52.49 -0.29 1.09 16 35 H 0.06 0.67 6.58 -51.93 -0.34 0.33 16 36 H 0.08 0.89 5.61 -51.93 -0.29 0.59 16 37 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 2.23 6.43 -51.93 -0.33 1.89 16 42 H 0.02 0.52 8.11 -51.93 -0.42 0.09 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 1.73 6.91 -51.93 -0.36 1.37 16 45 H 0.07 1.59 7.83 -51.93 -0.41 1.19 16 46 H 0.13 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -32.32 356.69 -10.49 -42.81 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.03 Total: -0.05 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.42 Total: -2.37 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.48 Total: -52.05 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.32 -10.49 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041912357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.329 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds