Wall clock time and date at job start Tue Mar 31 2020 10:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38362 * 119.84924 * 2 1 4 4 C 1.37959 * 120.14072 * 179.76347 * 3 2 1 5 5 C 1.39577 * 119.85644 * 0.50742 * 4 3 2 6 6 C 1.47843 * 120.14831 * 179.76740 * 5 4 3 7 7 O 1.21550 * 120.00167 * 310.01100 * 6 5 4 8 8 N 1.34775 * 119.99766 * 130.00526 * 6 5 4 9 9 C 1.46591 * 119.75796 * 3.76681 * 8 6 5 10 10 C 1.53890 * 110.70895 * 227.72375 * 9 8 6 11 11 C 1.51979 * 107.29143 * 308.18576 * 10 9 8 12 12 H 1.09009 * 111.01178 * 303.47144 * 11 10 9 13 13 C 1.53699 * 115.00182 * 175.44544 * 11 10 9 14 14 C 1.55298 * 101.81032 * 206.52645 * 13 11 10 15 15 N 1.48164 * 107.04333 * 22.44412 * 14 13 11 16 16 C 1.36932 * 126.39640 * 185.00426 * 15 14 13 17 17 H 1.08001 * 119.99942 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00413 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99492 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46963 * 60.00161 * 20 18 16 22 22 H 1.48497 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47469 * 300.00033 * 20 18 16 24 24 C 1.45502 * 107.20274 * 5.00170 * 15 14 13 25 25 H 1.09004 * 108.98389 * 86.35224 * 24 15 14 26 26 C 1.47805 * 119.75122 * 183.48713 * 8 6 5 27 27 C 1.39578 * 119.70830 * 359.74327 * 5 4 3 28 28 C 1.37964 * 119.85344 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46929 * 269.72705 * 1 2 3 30 30 H 1.08996 * 109.47107 * 29.72999 * 1 2 3 31 31 H 1.09002 * 109.46396 * 149.73163 * 1 2 3 32 32 H 1.07995 * 119.92849 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.07478 * 180.24904 * 4 3 2 34 34 H 1.09002 * 109.23297 * 348.04276 * 9 8 6 35 35 H 1.09006 * 109.23136 * 107.40884 * 9 8 6 36 36 H 1.09003 * 109.88693 * 67.62266 * 10 9 8 37 37 H 1.08995 * 109.89539 * 188.65772 * 10 9 8 38 38 H 1.09002 * 110.96290 * 324.65538 * 13 11 10 39 39 H 1.09001 * 110.96358 * 88.39689 * 13 11 10 40 40 H 1.09002 * 109.92377 * 263.09080 * 14 13 11 41 41 H 1.09002 * 110.09204 * 141.88118 * 14 13 11 42 42 H 0.96999 * 119.99477 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.06214 * 247.98257 * 26 8 6 44 44 H 1.09000 * 110.06286 * 9.54619 * 26 8 6 45 45 H 1.08005 * 120.07520 * 179.97438 * 27 5 4 46 46 H 1.08001 * 119.92210 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5752 1.2071 0.0049 5 6 4.2763 0.0002 -0.0008 6 6 5.7547 0.0002 -0.0008 7 8 6.3625 0.6808 -0.8038 8 7 6.4285 -0.7544 0.8897 9 6 5.6925 -1.6360 1.8008 10 6 6.1943 -1.4667 3.2457 11 6 7.7057 -1.6248 3.2205 12 1 7.9912 -2.5832 2.7866 13 6 8.4071 -1.3785 4.5657 14 6 9.8212 -0.9277 4.1090 15 7 9.6891 -0.4219 2.7226 16 6 10.7097 -0.0143 1.9057 17 1 10.4947 0.3375 0.9075 18 6 12.0207 -0.0532 2.3605 19 7 12.2827 -0.4825 3.5768 20 14 13.4129 0.5021 1.2458 21 1 13.2067 1.9230 0.8668 22 1 14.7062 0.3630 1.9622 23 1 13.4327 -0.3388 0.0220 24 6 8.2724 -0.4392 2.3914 25 1 7.8178 0.4921 2.7294 26 6 7.9045 -0.6915 0.9363 27 6 3.5754 -1.2069 -0.0061 28 6 2.1958 -1.1999 -0.0050 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3632 -0.8876 -0.5180 32 1 1.6521 2.1332 0.0004 33 1 4.1117 2.1444 0.0090 34 1 4.6313 -1.3910 1.7582 35 1 5.8339 -2.6715 1.4907 36 1 5.9313 -0.4757 3.6158 37 1 5.7509 -2.2306 3.8842 38 1 7.9082 -0.5883 5.1268 39 1 8.4606 -2.2963 5.1513 40 1 10.5066 -1.7750 4.1315 41 1 10.1899 -0.1348 4.7599 42 1 13.1987 -0.5093 3.8948 43 1 8.3299 -1.6366 0.5987 44 1 8.2638 0.1261 0.3113 45 1 4.1119 -2.1443 -0.0109 46 1 1.6523 -2.1332 -0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042331125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:24 Heat of formation + Delta-G solvation = 22.153259 kcal Electronic energy + Delta-G solvation = -26530.989381 eV Core-core repulsion = 23000.060439 eV Total energy + Delta-G solvation = -3530.928942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60289 -39.10669 -37.93815 -35.41016 -33.19085 -32.82227 -31.34196 -31.12296 -29.52105 -28.51484 -27.35824 -24.73725 -23.98829 -23.00453 -22.15866 -21.90371 -20.19125 -19.82318 -19.18935 -17.35946 -16.49222 -16.20614 -15.70141 -15.54955 -14.90958 -14.62357 -14.51261 -14.31568 -14.02990 -13.88354 -13.71373 -13.52299 -13.17420 -12.92738 -12.72131 -12.50505 -12.28520 -12.06862 -11.94006 -11.76550 -11.49933 -11.31695 -11.18221 -10.91377 -10.79296 -10.71798 -10.16022 -9.97385 -9.86733 -9.75077 -9.60723 -9.48249 -9.14662 -8.81551 -8.60727 -8.40899 -6.83961 -5.70149 -3.03800 0.83227 1.16016 2.78063 3.10635 3.44209 3.48099 3.49884 3.58187 4.43142 4.52609 4.56134 4.63238 4.74535 4.93751 5.00098 5.02547 5.14237 5.18048 5.26496 5.39987 5.42326 5.46309 5.53094 5.62999 5.69320 5.74799 5.79102 5.79874 5.90402 6.03213 6.06696 6.09726 6.15026 6.18319 6.22579 6.30513 6.38784 6.49505 6.57685 6.67091 6.73386 6.77116 7.06753 7.55257 7.57075 7.62718 7.82720 8.24538 8.30522 9.20873 9.83761 10.50527 11.42170 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003334 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.601044 B = 8395.341570 C = 9229.299408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.123 4.123 6 C 0.553 3.447 7 O -0.536 6.536 8 N -0.598 5.598 9 C 0.100 3.900 10 C -0.119 4.119 11 C -0.112 4.112 12 H 0.077 0.923 13 C -0.137 4.137 14 C 0.177 3.823 15 N -0.593 5.593 16 C -0.229 4.229 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.156 3.844 25 H 0.025 0.975 26 C 0.117 3.883 27 C -0.087 4.087 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.253 0.747 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.130 0.870 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.561 -3.473 -2.334 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.126 4.126 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.331 5.331 9 C -0.023 4.023 10 C -0.158 4.158 11 C -0.132 4.132 12 H 0.095 0.905 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.318 5.318 16 C -0.357 4.357 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.570 5.570 20 Si 0.741 3.259 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.047 3.953 25 H 0.042 0.958 26 C -0.005 4.005 27 C -0.106 4.106 28 C -0.145 4.145 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.148 0.852 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.933 -3.094 -2.736 23.302 hybrid contribution 0.875 0.229 -0.456 1.013 sum -22.058 -2.865 -3.193 22.471 Atomic orbital electron populations 1.20836 0.91005 1.02941 1.02528 1.20089 0.96240 0.93169 0.97790 1.20992 0.93730 0.97814 1.01754 1.21174 0.93961 0.97294 0.96127 1.19962 0.93273 0.94586 1.04797 1.18421 0.86908 0.79510 0.81088 1.90793 1.69572 1.42335 1.38644 1.48223 1.07764 1.42237 1.34866 1.22027 0.96485 0.93680 0.90138 1.21810 0.96614 1.02301 0.95080 1.22269 0.93023 0.99825 0.98101 0.90468 1.22713 0.99165 1.00043 0.95628 1.21547 0.90342 0.98189 0.84641 1.44180 0.99499 1.75743 1.12346 1.19005 0.85150 1.36154 0.95362 0.90329 1.24780 0.97209 1.01457 0.96798 1.69935 1.18609 1.52259 1.16163 0.86217 0.81539 0.78593 0.79574 1.21105 1.21634 1.21099 1.21084 0.87384 0.94989 0.91823 0.95810 1.21853 0.76269 1.03023 0.99379 1.21334 0.94338 0.97175 0.97706 1.20959 0.93721 0.97770 1.02026 0.90893 0.91390 0.91393 0.85497 0.85214 0.89457 0.91680 0.91443 0.90872 0.92553 0.92224 0.92659 0.94400 0.93721 0.91016 0.88956 0.85220 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.07 -0.62 5.89 -104.53 -0.62 -1.23 16 3 C -0.12 -1.19 9.68 -39.64 -0.38 -1.57 16 4 C -0.07 -0.80 9.73 -39.18 -0.38 -1.19 16 5 C -0.12 -1.63 4.94 -104.97 -0.52 -2.14 16 6 C 0.55 9.31 7.22 -12.33 -0.09 9.22 16 7 O -0.54 -11.14 16.42 5.32 0.09 -11.06 16 8 N -0.60 -9.61 3.00 -173.60 -0.52 -10.13 16 9 C 0.10 1.23 5.06 -3.53 -0.02 1.21 16 10 C -0.12 -1.56 5.72 -26.79 -0.15 -1.72 16 11 C -0.11 -1.91 2.61 -89.52 -0.23 -2.15 16 12 H 0.08 1.35 8.13 -51.92 -0.42 0.92 16 13 C -0.14 -2.50 6.54 -25.15 -0.16 -2.66 16 14 C 0.18 4.26 5.45 -1.91 -0.01 4.25 16 15 N -0.59 -15.06 3.35 -162.66 -0.54 -15.60 16 16 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 17 H 0.08 2.16 7.42 -52.49 -0.39 1.77 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.16 10.43 55.49 0.58 -26.58 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 C 0.16 3.25 2.76 -67.62 -0.19 3.06 16 25 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 26 C 0.12 2.27 5.70 -3.74 -0.02 2.25 16 27 C -0.09 -0.91 7.37 -39.18 -0.29 -1.20 16 28 C -0.13 -1.10 9.68 -39.64 -0.38 -1.48 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.32 8.08 -51.93 -0.42 -0.09 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.09 0.93 4.68 -51.93 -0.24 0.68 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.47 7.21 -51.93 -0.37 1.09 16 41 H 0.04 1.01 7.76 -51.93 -0.40 0.60 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.03 6.78 -51.93 -0.35 1.67 16 45 H 0.13 1.20 7.01 -52.48 -0.37 0.83 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -32.73 360.22 -10.49 -43.22 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.16 Total: -0.33 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.33 Total: -2.46 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.49 Total: -52.31 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.73 -10.49 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042331125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.373 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds