Wall clock time and date at job start Tue Mar 31 2020 10:39:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38362 * 119.84924 * 2 1
4 4 C 1.37959 * 120.14072 * 179.76347 * 3 2 1
5 5 C 1.39577 * 119.85644 * 0.50742 * 4 3 2
6 6 C 1.47843 * 120.14831 * 179.76740 * 5 4 3
7 7 O 1.21550 * 120.00167 * 310.01100 * 6 5 4
8 8 N 1.34775 * 119.99766 * 130.00526 * 6 5 4
9 9 C 1.46591 * 119.75796 * 3.76681 * 8 6 5
10 10 C 1.53890 * 110.70895 * 227.72375 * 9 8 6
11 11 C 1.51979 * 107.29143 * 308.18576 * 10 9 8
12 12 H 1.09009 * 111.01178 * 303.47144 * 11 10 9
13 13 C 1.53699 * 115.00182 * 175.44544 * 11 10 9
14 14 C 1.55298 * 101.81032 * 206.52645 * 13 11 10
15 15 N 1.48164 * 107.04333 * 22.44412 * 14 13 11
16 16 C 1.36932 * 126.39640 * 185.00426 * 15 14 13
17 17 H 1.08001 * 119.99942 * 179.97438 * 16 15 14
18 18 C 1.38817 * 120.00413 * 359.97438 * 16 15 14
19 19 N 1.31620 * 119.99492 * 0.02562 * 18 16 15
20 20 Si 1.86796 * 120.00095 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.46963 * 60.00161 * 20 18 16
22 22 H 1.48497 * 109.47183 * 180.02562 * 20 18 16
23 23 H 1.48495 * 109.47469 * 300.00033 * 20 18 16
24 24 C 1.45502 * 107.20274 * 5.00170 * 15 14 13
25 25 H 1.09004 * 108.98389 * 86.35224 * 24 15 14
26 26 C 1.47805 * 119.75122 * 183.48713 * 8 6 5
27 27 C 1.39578 * 119.70830 * 359.74327 * 5 4 3
28 28 C 1.37964 * 119.85344 * 359.97438 * 27 5 4
29 29 H 1.08999 * 109.46929 * 269.72705 * 1 2 3
30 30 H 1.08996 * 109.47107 * 29.72999 * 1 2 3
31 31 H 1.09002 * 109.46396 * 149.73163 * 1 2 3
32 32 H 1.07995 * 119.92849 * 0.02562 * 3 2 1
33 33 H 1.08001 * 120.07478 * 180.24904 * 4 3 2
34 34 H 1.09002 * 109.23297 * 348.04276 * 9 8 6
35 35 H 1.09006 * 109.23136 * 107.40884 * 9 8 6
36 36 H 1.09003 * 109.88693 * 67.62266 * 10 9 8
37 37 H 1.08995 * 109.89539 * 188.65772 * 10 9 8
38 38 H 1.09002 * 110.96290 * 324.65538 * 13 11 10
39 39 H 1.09001 * 110.96358 * 88.39689 * 13 11 10
40 40 H 1.09002 * 109.92377 * 263.09080 * 14 13 11
41 41 H 1.09002 * 110.09204 * 141.88118 * 14 13 11
42 42 H 0.96999 * 119.99477 * 180.02562 * 19 18 16
43 43 H 1.09003 * 110.06214 * 247.98257 * 26 8 6
44 44 H 1.09000 * 110.06286 * 9.54619 * 26 8 6
45 45 H 1.08005 * 120.07520 * 179.97438 * 27 5 4
46 46 H 1.08001 * 119.92210 * 179.97438 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1957 1.2001 0.0000
4 6 3.5752 1.2071 0.0049
5 6 4.2763 0.0002 -0.0008
6 6 5.7547 0.0002 -0.0008
7 8 6.3625 0.6808 -0.8038
8 7 6.4285 -0.7544 0.8897
9 6 5.6925 -1.6360 1.8008
10 6 6.1943 -1.4667 3.2457
11 6 7.7057 -1.6248 3.2205
12 1 7.9912 -2.5832 2.7866
13 6 8.4071 -1.3785 4.5657
14 6 9.8212 -0.9277 4.1090
15 7 9.6891 -0.4219 2.7226
16 6 10.7097 -0.0143 1.9057
17 1 10.4947 0.3375 0.9075
18 6 12.0207 -0.0532 2.3605
19 7 12.2827 -0.4825 3.5768
20 14 13.4129 0.5021 1.2458
21 1 13.2067 1.9230 0.8668
22 1 14.7062 0.3630 1.9622
23 1 13.4327 -0.3388 0.0220
24 6 8.2724 -0.4392 2.3914
25 1 7.8178 0.4921 2.7294
26 6 7.9045 -0.6915 0.9363
27 6 3.5754 -1.2069 -0.0061
28 6 2.1958 -1.1999 -0.0050
29 1 -0.3633 -0.0049 1.0277
30 1 -0.3633 0.8924 -0.5096
31 1 -0.3632 -0.8876 -0.5180
32 1 1.6521 2.1332 0.0004
33 1 4.1117 2.1444 0.0090
34 1 4.6313 -1.3910 1.7582
35 1 5.8339 -2.6715 1.4907
36 1 5.9313 -0.4757 3.6158
37 1 5.7509 -2.2306 3.8842
38 1 7.9082 -0.5883 5.1268
39 1 8.4606 -2.2963 5.1513
40 1 10.5066 -1.7750 4.1315
41 1 10.1899 -0.1348 4.7599
42 1 13.1987 -0.5093 3.8948
43 1 8.3299 -1.6366 0.5987
44 1 8.2638 0.1261 0.3113
45 1 4.1119 -2.1443 -0.0109
46 1 1.6523 -2.1332 -0.0095
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001042331125.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:23
Heat of formation + Delta-G solvation = 2.931801 kcal
Electronic energy + Delta-G solvation = -26531.822886 eV
Core-core repulsion = 23000.060439 eV
Total energy + Delta-G solvation = -3531.762447 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.80816 -40.26683 -39.23489 -36.93579 -34.73514 -33.89138 -32.88850 -32.03377
-30.97046 -30.17479 -28.20533 -26.57520 -25.43827 -23.94386 -23.34009 -22.86795
-21.82592 -21.33453 -20.45278 -18.79550 -18.23161 -17.40266 -16.87979 -16.66897
-16.47577 -15.91268 -15.75316 -15.64940 -15.52772 -14.85296 -14.67103 -14.57778
-14.41226 -14.33507 -13.93553 -13.83602 -13.56758 -13.18507 -13.13406 -12.96371
-12.84774 -12.71517 -12.61166 -12.47085 -12.14806 -12.04551 -11.92876 -11.78818
-11.56507 -11.38276 -11.06517 -10.98388 -10.74815 -9.92127 -9.79205 -9.56544
-8.93567 -7.88878 -5.23866 -0.00522 0.41098 1.41410 1.44196 1.50461
1.55391 1.88374 2.47054 2.75133 3.28987 3.37182 3.51547 3.76662
3.89312 3.92831 3.96037 4.02238 4.02437 4.23633 4.26619 4.27571
4.43119 4.46769 4.50838 4.59744 4.69348 4.78746 4.79335 4.81007
4.88562 4.89616 4.92705 5.08298 5.10884 5.13335 5.19172 5.27994
5.34218 5.36237 5.41627 5.47414 5.56807 5.63127 5.64619 5.76464
5.97991 6.16703 6.31960 7.00986 7.05714 7.73740 8.40737 9.21846
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.022803 B = 0.003334 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1227.601044 B = 8395.341570 C = 9229.299408
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.065 4.065
3 C -0.126 4.126
4 C -0.086 4.086
5 C -0.147 4.147
6 C 0.548 3.452
7 O -0.592 6.592
8 N -0.596 5.596
9 C 0.095 3.905
10 C -0.110 4.110
11 C -0.095 4.095
12 H 0.079 0.921
13 C -0.121 4.121
14 C 0.180 3.820
15 N -0.614 5.614
16 C -0.240 4.240
17 H 0.073 0.927
18 C -0.061 4.061
19 N -0.948 5.948
20 Si 0.972 3.028
21 H -0.283 1.283
22 H -0.289 1.289
23 H -0.277 1.277
24 C 0.148 3.852
25 H 0.005 0.995
26 C 0.129 3.871
27 C -0.085 4.085
28 C -0.120 4.120
29 H 0.086 0.914
30 H 0.074 0.926
31 H 0.082 0.918
32 H 0.147 0.853
33 H 0.112 0.888
34 H 0.114 0.886
35 H 0.090 0.910
36 H 0.062 0.938
37 H 0.116 0.884
38 H 0.069 0.931
39 H 0.089 0.911
40 H 0.024 0.976
41 H -0.001 1.001
42 H 0.248 0.752
43 H 0.069 0.931
44 H 0.054 0.946
45 H 0.144 0.856
46 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.728 -5.473 -2.106 28.341
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.066 4.066
3 C -0.144 4.144
4 C -0.105 4.105
5 C -0.150 4.150
6 C 0.338 3.662
7 O -0.473 6.473
8 N -0.327 5.327
9 C -0.026 4.026
10 C -0.148 4.148
11 C -0.115 4.115
12 H 0.097 0.903
13 C -0.159 4.159
14 C 0.056 3.944
15 N -0.339 5.339
16 C -0.369 4.369
17 H 0.091 0.909
18 C -0.254 4.254
19 N -0.596 5.596
20 Si 0.800 3.200
21 H -0.209 1.209
22 H -0.214 1.214
23 H -0.203 1.203
24 C 0.040 3.960
25 H 0.023 0.977
26 C 0.005 3.995
27 C -0.104 4.104
28 C -0.138 4.138
29 H 0.104 0.896
30 H 0.093 0.907
31 H 0.101 0.899
32 H 0.165 0.835
33 H 0.131 0.869
34 H 0.131 0.869
35 H 0.108 0.892
36 H 0.080 0.920
37 H 0.135 0.865
38 H 0.087 0.913
39 H 0.107 0.893
40 H 0.042 0.958
41 H 0.018 0.982
42 H 0.057 0.943
43 H 0.088 0.912
44 H 0.073 0.927
45 H 0.162 0.838
46 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -27.159 -5.116 -2.493 27.749
hybrid contribution 2.068 0.903 -0.546 2.321
sum -25.091 -4.214 -3.039 25.623
Atomic orbital electron populations
1.20920 0.88540 1.04116 1.03665 1.20523 0.97993 0.92600 0.95440
1.21229 0.92527 0.99533 1.01124 1.21193 0.95289 0.96450 0.97539
1.19723 0.90577 0.96370 1.08365 1.19137 0.88667 0.78279 0.80084
1.90750 1.71086 1.44587 1.40905 1.48278 1.06182 1.42766 1.35496
1.22376 0.97294 0.94097 0.88811 1.21812 0.93132 1.03584 0.96303
1.22201 0.95785 0.97629 0.95856 0.90266 1.22589 0.95084 1.01564
0.96637 1.21378 0.93680 0.95664 0.83719 1.44450 1.01022 1.75577
1.12842 1.19265 0.86346 1.35732 0.95574 0.90923 1.25555 0.99391
1.02195 0.98244 1.70139 1.18532 1.53418 1.17531 0.85254 0.78580
0.78128 0.78030 1.20897 1.21450 1.20281 1.21214 0.85146 0.96137
0.93489 0.97720 1.21418 0.79039 1.01311 0.97701 1.21491 0.95280
0.96363 0.97224 1.21345 0.92901 0.99237 1.00315 0.89584 0.90662
0.89908 0.83523 0.86949 0.86862 0.89169 0.91966 0.86541 0.91267
0.89287 0.95783 0.98232 0.94267 0.91245 0.92718 0.83788 0.82172
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.77 10.01 71.24 0.71 -0.05 16
2 C -0.07 -0.85 5.89 -19.81 -0.12 -0.97 16
3 C -0.13 -2.12 9.68 22.23 0.22 -1.90 16
4 C -0.09 -2.05 9.73 22.53 0.22 -1.83 16
5 C -0.15 -3.78 4.94 -20.09 -0.10 -3.88 16
6 C 0.55 19.00 7.22 86.79 0.63 19.63 16
7 O -0.59 -26.36 16.42 -3.87 -0.06 -26.43 16
8 N -0.60 -19.10 3.00 -821.42 -2.47 -21.57 16
9 C 0.10 2.05 5.06 86.66 0.44 2.48 16
10 C -0.11 -2.47 5.72 30.56 0.17 -2.30 16
11 C -0.10 -3.08 2.61 -10.08 -0.03 -3.10 16
12 H 0.08 2.58 8.13 -2.38 -0.02 2.56 16
13 C -0.12 -4.24 6.54 31.62 0.21 -4.03 16
14 C 0.18 9.00 5.45 86.85 0.47 9.47 16
15 N -0.61 -32.65 3.35 -668.54 -2.24 -34.89 16
16 C -0.24 -14.12 9.88 84.04 0.83 -13.29 16
17 H 0.07 4.23 7.42 -2.91 -0.02 4.21 16
18 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16
19 N -0.95 -58.25 10.43 21.65 0.23 -58.02 16
20 Si 0.97 47.97 29.55 68.60 2.03 50.00 16
21 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16
22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16
23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
24 C 0.15 6.34 2.76 45.73 0.13 6.47 16
25 H 0.01 0.25 7.94 -2.38 -0.02 0.23 16
26 C 0.13 5.24 5.70 85.86 0.49 5.73 16
27 C -0.09 -1.52 7.37 22.53 0.17 -1.35 16
28 C -0.12 -1.54 9.68 22.23 0.22 -1.32 16
29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16
30 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16
31 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16
32 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16
33 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16
34 H 0.11 1.94 4.68 -2.39 -0.01 1.93 16
35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16
36 H 0.06 1.51 7.99 -2.39 -0.02 1.50 16
37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16
38 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16
39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
40 H 0.02 1.33 7.21 -2.39 -0.02 1.31 16
41 H 0.00 -0.03 7.76 -2.39 -0.02 -0.05 16
42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16
44 H 0.05 2.61 6.78 -2.39 -0.02 2.59 16
45 H 0.14 2.09 7.01 -2.91 -0.02 2.07 16
46 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16
Total: -1.00 -78.56 360.22 3.57 -74.99
By element:
Atomic # 1 Polarization: 8.30 SS G_CDS: 0.96 Total: 9.26 kcal
Atomic # 6 Polarization: 1.53 SS G_CDS: 5.12 Total: 6.65 kcal
Atomic # 7 Polarization: -110.00 SS G_CDS: -4.48 Total: -114.48 kcal
Atomic # 8 Polarization: -26.36 SS G_CDS: -0.06 Total: -26.43 kcal
Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal
Total: -78.56 3.57 -74.99 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042331125.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.926 kcal
(2) G-P(sol) polarization free energy of solvation -78.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds