Wall clock time and date at job start Tue Mar 31 2020 10:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38362 * 119.84924 * 2 1 4 4 C 1.37959 * 120.14072 * 179.76347 * 3 2 1 5 5 C 1.39577 * 119.85644 * 0.50742 * 4 3 2 6 6 C 1.47843 * 120.14831 * 179.76740 * 5 4 3 7 7 O 1.21550 * 120.00167 * 310.01100 * 6 5 4 8 8 N 1.34775 * 119.99766 * 130.00526 * 6 5 4 9 9 C 1.46591 * 119.75796 * 3.76681 * 8 6 5 10 10 C 1.53890 * 110.70895 * 227.72375 * 9 8 6 11 11 C 1.51979 * 107.29143 * 308.18576 * 10 9 8 12 12 H 1.09009 * 111.01178 * 303.47144 * 11 10 9 13 13 C 1.53699 * 115.00182 * 175.44544 * 11 10 9 14 14 C 1.55298 * 101.81032 * 206.52645 * 13 11 10 15 15 N 1.48164 * 107.04333 * 22.44412 * 14 13 11 16 16 C 1.36932 * 126.39640 * 185.00426 * 15 14 13 17 17 H 1.08001 * 119.99942 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00413 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99492 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00095 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46963 * 60.00161 * 20 18 16 22 22 H 1.48497 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47469 * 300.00033 * 20 18 16 24 24 C 1.45502 * 107.20274 * 5.00170 * 15 14 13 25 25 H 1.09004 * 108.98389 * 86.35224 * 24 15 14 26 26 C 1.47805 * 119.75122 * 183.48713 * 8 6 5 27 27 C 1.39578 * 119.70830 * 359.74327 * 5 4 3 28 28 C 1.37964 * 119.85344 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46929 * 269.72705 * 1 2 3 30 30 H 1.08996 * 109.47107 * 29.72999 * 1 2 3 31 31 H 1.09002 * 109.46396 * 149.73163 * 1 2 3 32 32 H 1.07995 * 119.92849 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.07478 * 180.24904 * 4 3 2 34 34 H 1.09002 * 109.23297 * 348.04276 * 9 8 6 35 35 H 1.09006 * 109.23136 * 107.40884 * 9 8 6 36 36 H 1.09003 * 109.88693 * 67.62266 * 10 9 8 37 37 H 1.08995 * 109.89539 * 188.65772 * 10 9 8 38 38 H 1.09002 * 110.96290 * 324.65538 * 13 11 10 39 39 H 1.09001 * 110.96358 * 88.39689 * 13 11 10 40 40 H 1.09002 * 109.92377 * 263.09080 * 14 13 11 41 41 H 1.09002 * 110.09204 * 141.88118 * 14 13 11 42 42 H 0.96999 * 119.99477 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.06214 * 247.98257 * 26 8 6 44 44 H 1.09000 * 110.06286 * 9.54619 * 26 8 6 45 45 H 1.08005 * 120.07520 * 179.97438 * 27 5 4 46 46 H 1.08001 * 119.92210 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5752 1.2071 0.0049 5 6 4.2763 0.0002 -0.0008 6 6 5.7547 0.0002 -0.0008 7 8 6.3625 0.6808 -0.8038 8 7 6.4285 -0.7544 0.8897 9 6 5.6925 -1.6360 1.8008 10 6 6.1943 -1.4667 3.2457 11 6 7.7057 -1.6248 3.2205 12 1 7.9912 -2.5832 2.7866 13 6 8.4071 -1.3785 4.5657 14 6 9.8212 -0.9277 4.1090 15 7 9.6891 -0.4219 2.7226 16 6 10.7097 -0.0143 1.9057 17 1 10.4947 0.3375 0.9075 18 6 12.0207 -0.0532 2.3605 19 7 12.2827 -0.4825 3.5768 20 14 13.4129 0.5021 1.2458 21 1 13.2067 1.9230 0.8668 22 1 14.7062 0.3630 1.9622 23 1 13.4327 -0.3388 0.0220 24 6 8.2724 -0.4392 2.3914 25 1 7.8178 0.4921 2.7294 26 6 7.9045 -0.6915 0.9363 27 6 3.5754 -1.2069 -0.0061 28 6 2.1958 -1.1999 -0.0050 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3632 -0.8876 -0.5180 32 1 1.6521 2.1332 0.0004 33 1 4.1117 2.1444 0.0090 34 1 4.6313 -1.3910 1.7582 35 1 5.8339 -2.6715 1.4907 36 1 5.9313 -0.4757 3.6158 37 1 5.7509 -2.2306 3.8842 38 1 7.9082 -0.5883 5.1268 39 1 8.4606 -2.2963 5.1513 40 1 10.5066 -1.7750 4.1315 41 1 10.1899 -0.1348 4.7599 42 1 13.1987 -0.5093 3.8948 43 1 8.3299 -1.6366 0.5987 44 1 8.2638 0.1261 0.3113 45 1 4.1119 -2.1443 -0.0109 46 1 1.6523 -2.1332 -0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042331125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:23 Heat of formation + Delta-G solvation = 2.931801 kcal Electronic energy + Delta-G solvation = -26531.822886 eV Core-core repulsion = 23000.060439 eV Total energy + Delta-G solvation = -3531.762447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80816 -40.26683 -39.23489 -36.93579 -34.73514 -33.89138 -32.88850 -32.03377 -30.97046 -30.17479 -28.20533 -26.57520 -25.43827 -23.94386 -23.34009 -22.86795 -21.82592 -21.33453 -20.45278 -18.79550 -18.23161 -17.40266 -16.87979 -16.66897 -16.47577 -15.91268 -15.75316 -15.64940 -15.52772 -14.85296 -14.67103 -14.57778 -14.41226 -14.33507 -13.93553 -13.83602 -13.56758 -13.18507 -13.13406 -12.96371 -12.84774 -12.71517 -12.61166 -12.47085 -12.14806 -12.04551 -11.92876 -11.78818 -11.56507 -11.38276 -11.06517 -10.98388 -10.74815 -9.92127 -9.79205 -9.56544 -8.93567 -7.88878 -5.23866 -0.00522 0.41098 1.41410 1.44196 1.50461 1.55391 1.88374 2.47054 2.75133 3.28987 3.37182 3.51547 3.76662 3.89312 3.92831 3.96037 4.02238 4.02437 4.23633 4.26619 4.27571 4.43119 4.46769 4.50838 4.59744 4.69348 4.78746 4.79335 4.81007 4.88562 4.89616 4.92705 5.08298 5.10884 5.13335 5.19172 5.27994 5.34218 5.36237 5.41627 5.47414 5.56807 5.63127 5.64619 5.76464 5.97991 6.16703 6.31960 7.00986 7.05714 7.73740 8.40737 9.21846 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003334 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.601044 B = 8395.341570 C = 9229.299408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.126 4.126 4 C -0.086 4.086 5 C -0.147 4.147 6 C 0.548 3.452 7 O -0.592 6.592 8 N -0.596 5.596 9 C 0.095 3.905 10 C -0.110 4.110 11 C -0.095 4.095 12 H 0.079 0.921 13 C -0.121 4.121 14 C 0.180 3.820 15 N -0.614 5.614 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.972 3.028 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.148 3.852 25 H 0.005 0.995 26 C 0.129 3.871 27 C -0.085 4.085 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.024 0.976 41 H -0.001 1.001 42 H 0.248 0.752 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.144 0.856 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.728 -5.473 -2.106 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.150 4.150 6 C 0.338 3.662 7 O -0.473 6.473 8 N -0.327 5.327 9 C -0.026 4.026 10 C -0.148 4.148 11 C -0.115 4.115 12 H 0.097 0.903 13 C -0.159 4.159 14 C 0.056 3.944 15 N -0.339 5.339 16 C -0.369 4.369 17 H 0.091 0.909 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.800 3.200 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.040 3.960 25 H 0.023 0.977 26 C 0.005 3.995 27 C -0.104 4.104 28 C -0.138 4.138 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.162 0.838 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.159 -5.116 -2.493 27.749 hybrid contribution 2.068 0.903 -0.546 2.321 sum -25.091 -4.214 -3.039 25.623 Atomic orbital electron populations 1.20920 0.88540 1.04116 1.03665 1.20523 0.97993 0.92600 0.95440 1.21229 0.92527 0.99533 1.01124 1.21193 0.95289 0.96450 0.97539 1.19723 0.90577 0.96370 1.08365 1.19137 0.88667 0.78279 0.80084 1.90750 1.71086 1.44587 1.40905 1.48278 1.06182 1.42766 1.35496 1.22376 0.97294 0.94097 0.88811 1.21812 0.93132 1.03584 0.96303 1.22201 0.95785 0.97629 0.95856 0.90266 1.22589 0.95084 1.01564 0.96637 1.21378 0.93680 0.95664 0.83719 1.44450 1.01022 1.75577 1.12842 1.19265 0.86346 1.35732 0.95574 0.90923 1.25555 0.99391 1.02195 0.98244 1.70139 1.18532 1.53418 1.17531 0.85254 0.78580 0.78128 0.78030 1.20897 1.21450 1.20281 1.21214 0.85146 0.96137 0.93489 0.97720 1.21418 0.79039 1.01311 0.97701 1.21491 0.95280 0.96363 0.97224 1.21345 0.92901 0.99237 1.00315 0.89584 0.90662 0.89908 0.83523 0.86949 0.86862 0.89169 0.91966 0.86541 0.91267 0.89287 0.95783 0.98232 0.94267 0.91245 0.92718 0.83788 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 71.24 0.71 -0.05 16 2 C -0.07 -0.85 5.89 -19.81 -0.12 -0.97 16 3 C -0.13 -2.12 9.68 22.23 0.22 -1.90 16 4 C -0.09 -2.05 9.73 22.53 0.22 -1.83 16 5 C -0.15 -3.78 4.94 -20.09 -0.10 -3.88 16 6 C 0.55 19.00 7.22 86.79 0.63 19.63 16 7 O -0.59 -26.36 16.42 -3.87 -0.06 -26.43 16 8 N -0.60 -19.10 3.00 -821.42 -2.47 -21.57 16 9 C 0.10 2.05 5.06 86.66 0.44 2.48 16 10 C -0.11 -2.47 5.72 30.56 0.17 -2.30 16 11 C -0.10 -3.08 2.61 -10.08 -0.03 -3.10 16 12 H 0.08 2.58 8.13 -2.38 -0.02 2.56 16 13 C -0.12 -4.24 6.54 31.62 0.21 -4.03 16 14 C 0.18 9.00 5.45 86.85 0.47 9.47 16 15 N -0.61 -32.65 3.35 -668.54 -2.24 -34.89 16 16 C -0.24 -14.12 9.88 84.04 0.83 -13.29 16 17 H 0.07 4.23 7.42 -2.91 -0.02 4.21 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 19 N -0.95 -58.25 10.43 21.65 0.23 -58.02 16 20 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 21 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 C 0.15 6.34 2.76 45.73 0.13 6.47 16 25 H 0.01 0.25 7.94 -2.38 -0.02 0.23 16 26 C 0.13 5.24 5.70 85.86 0.49 5.73 16 27 C -0.09 -1.52 7.37 22.53 0.17 -1.35 16 28 C -0.12 -1.54 9.68 22.23 0.22 -1.32 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.11 1.94 4.68 -2.39 -0.01 1.93 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.51 7.99 -2.39 -0.02 1.50 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.02 1.33 7.21 -2.39 -0.02 1.31 16 41 H 0.00 -0.03 7.76 -2.39 -0.02 -0.05 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.05 2.61 6.78 -2.39 -0.02 2.59 16 45 H 0.14 2.09 7.01 -2.91 -0.02 2.07 16 46 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -78.56 360.22 3.57 -74.99 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.96 Total: 9.26 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.12 Total: 6.65 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.48 Total: -114.48 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.06 Total: -26.43 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.56 3.57 -74.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042331125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.926 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds