Wall clock time and date at job start Tue Mar 31 2020 11:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34774 * 119.99848 * 2 1 4 4 O 1.21282 * 120.00183 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00333 * 0.02562 * 3 2 1 6 6 H 1.09007 * 115.54696 * 315.04112 * 5 3 2 7 7 C 1.53003 * 117.50464 * 169.33206 * 5 3 2 8 8 C 1.52995 * 117.50292 * 100.70747 * 5 3 2 9 9 C 1.53006 * 117.50284 * 215.00525 * 8 5 3 10 10 C 1.50704 * 117.49977 * 0.02562 * 8 5 3 11 11 C 1.38234 * 120.00073 * 119.66876 * 10 8 5 12 12 C 1.38237 * 119.99627 * 179.97438 * 11 10 8 13 13 C 1.38231 * 120.00244 * 0.09087 * 12 11 10 14 14 C 1.38236 * 119.99942 * 359.97438 * 13 12 11 15 15 C 1.38235 * 120.00073 * 359.95858 * 14 13 12 16 16 C 1.46501 * 120.00193 * 180.02562 * 2 1 3 17 17 C 1.53941 * 113.74009 * 36.67413 * 16 2 1 18 18 N 1.47579 * 86.11918 * 222.04686 * 17 16 2 19 19 C 1.36936 * 134.49691 * 204.64173 * 18 17 16 20 20 H 1.08000 * 120.00019 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99877 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99973 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00111 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47350 * 59.99423 * 23 21 19 25 25 H 1.48502 * 109.47116 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46766 * 299.99623 * 23 21 19 27 27 C 1.47585 * 91.01176 * 24.64214 * 18 17 16 28 28 H 1.09009 * 109.47331 * 90.00090 * 1 2 3 29 29 H 1.09004 * 109.47414 * 209.99284 * 1 2 3 30 30 H 1.08998 * 109.47477 * 329.99753 * 1 2 3 31 31 H 1.08996 * 117.49780 * 145.01394 * 7 5 3 32 32 H 1.08996 * 117.49115 * 0.02562 * 7 5 3 33 33 H 1.09000 * 109.47483 * 180.08648 * 9 8 5 34 34 H 1.09005 * 109.46930 * 300.09106 * 9 8 5 35 35 H 1.09001 * 109.46550 * 60.08484 * 9 8 5 36 36 H 1.08001 * 119.99868 * 0.06654 * 11 10 8 37 37 H 1.08001 * 119.99366 * 180.36553 * 12 11 10 38 38 H 1.07996 * 119.99766 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.99850 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.00054 * 180.02562 * 15 14 13 41 41 H 1.09000 * 112.94569 * 168.40821 * 16 2 1 42 42 H 1.08994 * 113.77417 * 336.34859 * 17 16 2 43 43 H 1.09010 * 113.76709 * 107.74834 * 17 16 2 44 44 H 0.97003 * 119.99935 * 180.02562 * 22 21 19 45 45 H 1.09002 * 113.76791 * 221.05611 * 27 18 17 46 46 H 1.09002 * 113.87075 * 89.67180 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.5473 2.5316 -0.6940 7 6 2.1871 3.7510 0.2518 8 6 1.2509 3.2100 1.3342 9 6 -0.0493 3.9745 1.5909 10 6 1.8827 2.5761 2.5468 11 6 2.8693 3.2486 3.2433 12 6 3.4484 2.6673 4.3559 13 6 3.0422 1.4128 4.7707 14 6 2.0565 0.7398 4.0733 15 6 1.4765 1.3216 2.9616 16 6 2.1975 -1.2687 -0.0006 17 6 1.5286 -2.3702 -0.8427 18 7 1.8682 -3.2839 0.2653 19 6 2.0737 -4.6339 0.3673 20 1 2.3189 -5.0721 1.3235 21 6 1.9680 -5.4391 -0.7584 22 7 1.6707 -4.9048 -1.9240 23 14 2.2477 -7.2807 -0.6192 24 1 1.2641 -7.8605 0.3302 25 1 2.0771 -7.9096 -1.9536 26 1 3.6240 -7.5362 -0.1234 27 6 1.8972 -2.1583 1.2194 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.8769 4.6517 -0.2778 32 1 3.2597 3.6482 0.4162 33 1 -0.0046 4.4486 2.5714 34 1 -0.1795 4.7378 0.8238 35 1 -0.8902 3.2816 1.5604 36 1 3.1867 4.2287 2.9192 37 1 4.2151 3.1953 4.9035 38 1 3.4950 0.9586 5.6396 39 1 1.7395 -0.2405 4.3972 40 1 0.7061 0.7959 2.4170 41 1 3.2615 -1.1450 -0.2022 42 1 0.4570 -2.2273 -0.9816 43 1 2.0534 -2.5924 -1.7719 44 1 1.5964 -5.4676 -2.7107 45 1 2.7162 -2.2114 1.9367 46 1 0.9346 -1.9518 1.6874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043388832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:58 Heat of formation + Delta-G solvation = 79.492324 kcal Electronic energy + Delta-G solvation = -26909.067785 eV Core-core repulsion = 23380.625251 eV Total energy + Delta-G solvation = -3528.442534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60701 -39.03572 -37.85004 -36.50705 -34.37425 -31.96183 -30.84342 -30.68897 -28.83188 -27.76453 -26.59187 -24.80560 -24.69918 -23.16099 -22.68158 -22.02785 -19.98524 -19.22926 -18.37540 -17.29218 -16.81786 -16.54067 -15.87123 -15.43705 -14.93505 -14.85993 -14.51583 -14.36368 -14.05727 -13.76306 -13.35868 -13.26055 -12.99022 -12.76371 -12.70231 -12.45890 -12.26905 -12.09977 -11.92131 -11.67137 -11.51408 -11.28228 -11.10579 -11.06253 -10.88298 -10.70954 -10.47929 -10.21056 -10.08338 -10.03809 -9.55265 -9.36100 -8.84872 -8.80392 -8.68890 -8.07488 -6.91036 -5.78737 -3.11563 1.37937 1.46870 2.73778 3.27432 3.40148 3.43939 3.45024 3.69180 3.81866 4.38875 4.46987 4.57328 4.68179 4.84127 4.98571 5.04686 5.09720 5.15866 5.22896 5.33715 5.45176 5.47641 5.48456 5.51618 5.52061 5.63790 5.68515 5.69727 5.79432 5.86882 5.91868 6.01517 6.08166 6.09101 6.11563 6.22008 6.44840 6.51258 6.57884 6.60057 6.62748 6.83683 7.04252 7.19829 7.36684 7.52290 7.83302 7.95531 8.55623 9.02352 9.68463 10.55944 11.38344 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.003710 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.653605 B = 7544.884288 C = 8355.920155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.543 3.457 4 O -0.541 6.541 5 C -0.175 4.175 6 H 0.125 0.875 7 C -0.136 4.136 8 C -0.067 4.067 9 C -0.110 4.110 10 C -0.051 4.051 11 C -0.106 4.106 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.101 4.101 16 C 0.094 3.906 17 C 0.157 3.843 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.111 3.889 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.255 0.745 45 H 0.045 0.955 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 19.963 8.601 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.331 3.669 4 O -0.418 6.418 5 C -0.196 4.196 6 H 0.143 0.857 7 C -0.173 4.173 8 C -0.068 4.068 9 C -0.167 4.167 10 C -0.051 4.051 11 C -0.124 4.124 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.132 4.132 15 C -0.119 4.119 16 C -0.010 4.010 17 C 0.031 3.969 18 N -0.332 5.332 19 C -0.351 4.351 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.016 4.016 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.553 19.589 8.463 21.632 hybrid contribution -0.121 -1.233 -0.080 1.242 sum -3.674 18.356 8.383 20.511 Atomic orbital electron populations 1.21778 0.80205 1.02721 1.01913 1.47894 1.06658 1.05989 1.72189 1.19496 0.87337 0.84214 0.75872 1.90665 1.13872 1.87176 1.50071 1.22488 1.03515 0.92547 1.01091 0.85713 1.23187 0.99030 0.95333 0.99782 1.20192 0.98318 1.01041 0.87222 1.21357 0.93965 0.99155 1.02259 1.18937 0.96666 0.94453 0.95060 1.20889 0.96196 0.99865 0.95487 1.21068 1.00026 0.95851 0.97144 1.21138 0.97543 0.95179 1.00034 1.21139 0.96738 0.99718 0.95572 1.21035 1.00002 0.94431 0.96439 1.23974 0.97921 0.79864 0.99227 1.22623 0.96519 0.83696 0.94088 1.45637 1.81074 1.02060 1.04398 1.18938 1.41082 0.80232 0.94839 0.90159 1.24788 1.01835 0.98211 0.95420 1.69807 1.53979 1.34286 0.98673 0.86178 0.78103 0.84671 0.76677 1.21158 1.21517 1.20999 1.22935 0.97857 0.87234 0.93588 0.92528 0.90437 0.91633 0.87839 0.87408 0.91625 0.91819 0.91772 0.86298 0.86308 0.86315 0.86011 0.86119 0.86934 0.95101 0.90614 0.93524 0.93714 0.94899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 7.85 59.84 0.47 1.47 16 2 N -0.60 -9.74 2.80 -175.75 -0.49 -10.24 16 3 C 0.54 8.95 5.46 -10.99 -0.06 8.89 16 4 O -0.54 -11.06 15.80 5.56 0.09 -10.97 16 5 C -0.18 -2.11 4.19 -91.77 -0.38 -2.49 16 6 H 0.13 1.23 7.79 -51.92 -0.40 0.83 16 7 C -0.14 -1.46 9.15 -26.73 -0.24 -1.71 16 8 C -0.07 -0.70 2.18 -155.66 -0.34 -1.04 16 9 C -0.11 -0.85 9.84 37.16 0.37 -0.49 16 10 C -0.05 -0.64 4.40 -104.62 -0.46 -1.10 16 11 C -0.11 -1.26 9.47 -39.58 -0.37 -1.63 16 12 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 13 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 14 C -0.11 -1.47 10.05 -39.58 -0.40 -1.87 16 15 C -0.10 -1.34 8.51 -39.58 -0.34 -1.68 16 16 C 0.09 1.90 4.40 -70.15 -0.31 1.60 16 17 C 0.16 3.70 6.93 -2.98 -0.02 3.68 16 18 N -0.61 -15.64 3.70 -178.09 -0.66 -16.30 16 19 C -0.22 -6.30 10.70 -15.06 -0.16 -6.47 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -27.30 11.38 55.49 0.63 -26.67 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.11 2.33 8.46 -2.97 -0.03 2.31 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 1.07 6.36 -51.93 -0.33 0.74 16 30 H 0.07 0.66 6.28 -51.93 -0.33 0.34 16 31 H 0.10 0.83 8.05 -51.93 -0.42 0.42 16 32 H 0.11 1.38 7.70 -51.93 -0.40 0.98 16 33 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.12 1.58 6.21 -52.49 -0.33 1.25 16 41 H 0.11 2.55 7.24 -51.93 -0.38 2.18 16 42 H 0.03 0.71 6.71 -51.93 -0.35 0.37 16 43 H 0.08 2.02 7.15 -51.92 -0.37 1.65 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.65 6.98 -51.93 -0.36 0.28 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -33.38 370.97 -10.03 -43.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.00 Total: 2.43 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -3.17 Total: -4.42 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.52 Total: -53.20 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.38 -10.03 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043388832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.900 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds