Wall clock time and date at job start Tue Mar 31 2020 11:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34774 * 119.99848 * 2 1 4 4 O 1.21282 * 120.00183 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00333 * 0.02562 * 3 2 1 6 6 H 1.09007 * 115.54696 * 315.04112 * 5 3 2 7 7 C 1.53003 * 117.50464 * 169.33206 * 5 3 2 8 8 C 1.52995 * 117.50292 * 100.70747 * 5 3 2 9 9 C 1.53006 * 117.50284 * 215.00525 * 8 5 3 10 10 C 1.50704 * 117.49977 * 0.02562 * 8 5 3 11 11 C 1.38234 * 120.00073 * 119.66876 * 10 8 5 12 12 C 1.38237 * 119.99627 * 179.97438 * 11 10 8 13 13 C 1.38231 * 120.00244 * 0.09087 * 12 11 10 14 14 C 1.38236 * 119.99942 * 359.97438 * 13 12 11 15 15 C 1.38235 * 120.00073 * 359.95858 * 14 13 12 16 16 C 1.46501 * 120.00193 * 180.02562 * 2 1 3 17 17 C 1.53941 * 113.74009 * 36.67413 * 16 2 1 18 18 N 1.47579 * 86.11918 * 222.04686 * 17 16 2 19 19 C 1.36936 * 134.49691 * 204.64173 * 18 17 16 20 20 H 1.08000 * 120.00019 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99877 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99973 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00111 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47350 * 59.99423 * 23 21 19 25 25 H 1.48502 * 109.47116 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46766 * 299.99623 * 23 21 19 27 27 C 1.47585 * 91.01176 * 24.64214 * 18 17 16 28 28 H 1.09009 * 109.47331 * 90.00090 * 1 2 3 29 29 H 1.09004 * 109.47414 * 209.99284 * 1 2 3 30 30 H 1.08998 * 109.47477 * 329.99753 * 1 2 3 31 31 H 1.08996 * 117.49780 * 145.01394 * 7 5 3 32 32 H 1.08996 * 117.49115 * 0.02562 * 7 5 3 33 33 H 1.09000 * 109.47483 * 180.08648 * 9 8 5 34 34 H 1.09005 * 109.46930 * 300.09106 * 9 8 5 35 35 H 1.09001 * 109.46550 * 60.08484 * 9 8 5 36 36 H 1.08001 * 119.99868 * 0.06654 * 11 10 8 37 37 H 1.08001 * 119.99366 * 180.36553 * 12 11 10 38 38 H 1.07996 * 119.99766 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.99850 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.00054 * 180.02562 * 15 14 13 41 41 H 1.09000 * 112.94569 * 168.40821 * 16 2 1 42 42 H 1.08994 * 113.77417 * 336.34859 * 17 16 2 43 43 H 1.09010 * 113.76709 * 107.74834 * 17 16 2 44 44 H 0.97003 * 119.99935 * 180.02562 * 22 21 19 45 45 H 1.09002 * 113.76791 * 221.05611 * 27 18 17 46 46 H 1.09002 * 113.87075 * 89.67180 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.5473 2.5316 -0.6940 7 6 2.1871 3.7510 0.2518 8 6 1.2509 3.2100 1.3342 9 6 -0.0493 3.9745 1.5909 10 6 1.8827 2.5761 2.5468 11 6 2.8693 3.2486 3.2433 12 6 3.4484 2.6673 4.3559 13 6 3.0422 1.4128 4.7707 14 6 2.0565 0.7398 4.0733 15 6 1.4765 1.3216 2.9616 16 6 2.1975 -1.2687 -0.0006 17 6 1.5286 -2.3702 -0.8427 18 7 1.8682 -3.2839 0.2653 19 6 2.0737 -4.6339 0.3673 20 1 2.3189 -5.0721 1.3235 21 6 1.9680 -5.4391 -0.7584 22 7 1.6707 -4.9048 -1.9240 23 14 2.2477 -7.2807 -0.6192 24 1 1.2641 -7.8605 0.3302 25 1 2.0771 -7.9096 -1.9536 26 1 3.6240 -7.5362 -0.1234 27 6 1.8972 -2.1583 1.2194 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.8769 4.6517 -0.2778 32 1 3.2597 3.6482 0.4162 33 1 -0.0046 4.4486 2.5714 34 1 -0.1795 4.7378 0.8238 35 1 -0.8902 3.2816 1.5604 36 1 3.1867 4.2287 2.9192 37 1 4.2151 3.1953 4.9035 38 1 3.4950 0.9586 5.6396 39 1 1.7395 -0.2405 4.3972 40 1 0.7061 0.7959 2.4170 41 1 3.2615 -1.1450 -0.2022 42 1 0.4570 -2.2273 -0.9816 43 1 2.0534 -2.5924 -1.7719 44 1 1.5964 -5.4676 -2.7107 45 1 2.7162 -2.2114 1.9367 46 1 0.9346 -1.9518 1.6874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043388832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:57 Heat of formation + Delta-G solvation = 60.929034 kcal Electronic energy + Delta-G solvation = -26909.872749 eV Core-core repulsion = 23380.625251 eV Total energy + Delta-G solvation = -3529.247498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74289 -40.31408 -39.24800 -37.60995 -35.88907 -33.99901 -31.75436 -31.60106 -29.87696 -29.30786 -27.85928 -26.63866 -26.11779 -24.12814 -24.01702 -23.15706 -21.18180 -20.47291 -19.72702 -18.88969 -18.38217 -17.70189 -17.18060 -16.85772 -16.55888 -15.84928 -15.79988 -15.66526 -15.23564 -15.14341 -14.49388 -14.26198 -14.17113 -13.84653 -13.75382 -13.59167 -13.53479 -13.30898 -13.17995 -13.10568 -12.98874 -12.80937 -12.65048 -12.58695 -12.13678 -12.00303 -11.99167 -11.87547 -11.56122 -11.27107 -11.00735 -10.88538 -10.60740 -9.78443 -9.59395 -9.51712 -8.97991 -7.94163 -5.28724 0.46571 0.53593 1.44481 1.48316 1.54140 1.54501 1.97701 2.47529 2.75843 2.89649 3.24584 3.37202 3.49743 3.68370 3.81406 3.84493 3.93331 4.11871 4.17587 4.21923 4.27453 4.28879 4.36034 4.45875 4.60396 4.65558 4.70511 4.73204 4.78177 4.84118 4.88664 4.94078 4.98799 5.01905 5.14858 5.16997 5.18196 5.20941 5.24920 5.40740 5.44119 5.61342 5.65636 5.69397 5.70812 5.87632 6.14745 6.51740 6.87217 7.24777 7.55562 8.49274 9.22612 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.003710 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.653605 B = 7544.884288 C = 8355.920155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.594 5.594 3 C 0.540 3.460 4 O -0.589 6.589 5 C -0.184 4.184 6 H 0.155 0.845 7 C -0.132 4.132 8 C -0.052 4.052 9 C -0.107 4.107 10 C -0.064 4.064 11 C -0.118 4.118 12 C -0.129 4.129 13 C -0.132 4.132 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.119 3.881 17 C 0.163 3.837 18 N -0.635 5.635 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.062 4.062 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.274 1.274 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.121 3.879 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.250 0.750 45 H 0.042 0.958 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 21.782 9.503 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.325 5.325 3 C 0.330 3.670 4 O -0.470 6.470 5 C -0.205 4.205 6 H 0.173 0.827 7 C -0.169 4.169 8 C -0.053 4.053 9 C -0.163 4.163 10 C -0.064 4.064 11 C -0.135 4.135 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.136 4.136 16 C 0.013 3.987 17 C 0.037 3.963 18 N -0.362 5.362 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.200 1.200 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.005 4.005 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.991 21.444 9.396 23.938 hybrid contribution 0.369 -1.733 -0.307 1.798 sum -4.622 19.711 9.089 22.192 Atomic orbital electron populations 1.22005 0.77655 1.04066 1.03099 1.47841 1.08033 1.04587 1.72025 1.20294 0.87014 0.85431 0.74278 1.90643 1.16250 1.87930 1.52132 1.22512 1.04408 0.90197 1.03342 0.82742 1.23290 0.97739 0.95780 1.00099 1.20312 0.99364 0.99974 0.85635 1.21404 0.92267 0.99491 1.03174 1.19245 0.96921 0.94396 0.95885 1.21196 0.96037 1.00696 0.95614 1.21417 1.00264 0.95799 0.97188 1.21416 0.97418 0.95572 1.00609 1.21340 0.97480 1.00176 0.96112 1.21137 1.00553 0.95083 0.96872 1.23180 0.96405 0.81445 0.97636 1.22473 0.96616 0.84714 0.92519 1.45941 1.81469 1.02311 1.06449 1.19338 1.40538 0.81700 0.95134 0.89768 1.25643 1.02156 1.02667 0.95099 1.69999 1.55342 1.35534 0.99152 0.85115 0.78236 0.79248 0.76492 1.19966 1.21840 1.20418 1.22977 0.98795 0.85462 0.93225 0.91404 0.91285 0.88087 0.84410 0.89942 0.91395 0.89633 0.90884 0.84687 0.84061 0.84677 0.85824 0.86251 0.89884 0.94207 0.94495 0.94097 0.93957 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 7.85 127.77 1.00 2.75 16 2 N -0.59 -19.13 2.80 -828.33 -2.32 -21.45 16 3 C 0.54 17.46 5.46 87.66 0.48 17.94 16 4 O -0.59 -24.63 15.80 -3.04 -0.05 -24.68 16 5 C -0.18 -3.94 4.19 -11.54 -0.05 -3.99 16 6 H 0.16 2.40 7.79 -2.38 -0.02 2.38 16 7 C -0.13 -2.49 9.15 30.59 0.28 -2.21 16 8 C -0.05 -0.95 2.18 -52.93 -0.12 -1.06 16 9 C -0.11 -1.21 9.84 71.98 0.71 -0.50 16 10 C -0.06 -1.51 4.40 -19.86 -0.09 -1.59 16 11 C -0.12 -2.61 9.47 22.27 0.21 -2.40 16 12 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 13 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 14 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 15 C -0.12 -3.03 8.51 22.27 0.19 -2.84 16 16 C 0.12 4.95 4.40 46.75 0.21 5.15 16 17 C 0.16 7.93 6.93 86.48 0.60 8.52 16 18 N -0.63 -33.48 3.70 -717.34 -2.65 -36.13 16 19 C -0.24 -13.69 10.70 84.03 0.90 -12.79 16 20 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 22 N -0.95 -57.94 11.38 21.65 0.25 -57.69 16 23 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 C 0.12 5.14 8.46 86.48 0.73 5.88 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 1.79 6.36 -2.39 -0.02 1.77 16 30 H 0.10 1.70 6.28 -2.39 -0.01 1.69 16 31 H 0.14 1.63 8.05 -2.39 -0.02 1.61 16 32 H 0.08 2.03 7.70 -2.39 -0.02 2.01 16 33 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.08 0.63 7.90 -2.38 -0.02 0.61 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.12 2.96 6.21 -2.91 -0.02 2.94 16 41 H 0.08 3.98 7.24 -2.39 -0.02 3.96 16 42 H 0.04 1.86 6.71 -2.39 -0.02 1.84 16 43 H 0.04 2.07 7.15 -2.38 -0.02 2.05 16 44 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 2.21 6.98 -2.39 -0.02 2.20 16 Total: -1.00 -75.14 370.97 4.41 -70.73 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.97 Total: 19.89 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.19 Total: 1.18 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.73 Total: -115.27 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.14 4.41 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043388832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.659 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds