Wall clock time and date at job start Tue Mar 31 2020 11:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00180 * 2 1 4 4 O 1.21283 * 120.00063 * 185.37032 * 3 2 1 5 5 C 1.50703 * 120.00024 * 5.36765 * 3 2 1 6 6 C 1.53002 * 115.55998 * 279.80988 * 5 3 2 7 7 C 1.52995 * 117.50128 * 65.49977 * 5 3 2 8 8 C 1.52998 * 60.03120 * 107.50283 * 7 5 3 9 9 H 1.08998 * 117.50050 * 252.49566 * 8 7 5 10 10 C 1.50700 * 117.49904 * 107.50596 * 8 7 5 11 11 C 1.38233 * 120.00176 * 351.11795 * 10 8 7 12 12 C 1.38232 * 120.00451 * 179.79587 * 11 10 8 13 13 C 1.38236 * 119.99649 * 0.45352 * 12 11 10 14 14 C 1.38239 * 120.00060 * 359.77524 * 13 12 11 15 15 C 1.38229 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.46497 * 119.99412 * 179.97438 * 2 1 3 17 17 C 1.53946 * 113.74189 * 36.68139 * 16 2 1 18 18 N 1.47583 * 86.11300 * 222.03957 * 17 16 2 19 19 C 1.36937 * 134.49301 * 204.63221 * 18 17 16 20 20 H 1.07998 * 120.00162 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00287 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46929 * 60.00110 * 23 21 19 25 25 H 1.48501 * 109.46981 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47023 * 299.99614 * 23 21 19 27 27 C 1.47582 * 91.01491 * 24.64071 * 18 17 16 28 28 H 1.09001 * 109.47254 * 84.86437 * 1 2 3 29 29 H 1.08994 * 109.47476 * 204.87249 * 1 2 3 30 30 H 1.09000 * 109.47146 * 324.87115 * 1 2 3 31 31 H 1.09006 * 109.47154 * 149.19086 * 6 5 3 32 32 H 1.08999 * 109.47199 * 269.18708 * 6 5 3 33 33 H 1.09002 * 109.47301 * 29.18685 * 6 5 3 34 34 H 1.09002 * 117.49959 * 0.02562 * 7 5 3 35 35 H 1.08994 * 117.50123 * 215.00185 * 7 5 3 36 36 H 1.08003 * 119.99580 * 359.97438 * 11 10 8 37 37 H 1.07998 * 120.00195 * 180.25353 * 12 11 10 38 38 H 1.08008 * 119.99952 * 179.79747 * 13 12 11 39 39 H 1.07998 * 120.00133 * 180.02562 * 14 13 12 40 40 H 1.08006 * 119.99888 * 179.97438 * 15 14 13 41 41 H 1.09004 * 112.94050 * 168.40671 * 16 2 1 42 42 H 1.08993 * 113.77191 * 336.34133 * 17 16 2 43 43 H 1.08998 * 113.76991 * 107.74242 * 17 16 2 44 44 H 0.97004 * 120.00554 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.76756 * 221.05557 * 27 18 17 46 46 H 1.08998 * 113.87327 * 89.67386 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3477 1.1694 -0.0983 5 6 1.3904 2.4694 0.1221 6 6 0.7491 2.9856 -1.1676 7 6 0.6532 2.7402 1.4351 8 6 1.9347 3.5084 1.1056 9 1 2.8341 3.2500 1.6645 10 6 1.7979 4.9614 0.7300 11 6 0.5452 5.5044 0.5137 12 6 0.4193 6.8382 0.1733 13 6 1.5468 7.6268 0.0401 14 6 2.7999 7.0827 0.2518 15 6 2.9254 5.7499 0.5962 16 6 2.1974 -1.2688 0.0006 17 6 1.5285 -2.3709 -0.8407 18 7 1.8680 -3.2837 0.2681 19 6 2.0734 -4.6336 0.3713 20 1 2.3187 -5.0710 1.3278 21 6 1.9675 -5.4398 -0.7538 22 7 1.6691 -4.9067 -1.9196 23 14 2.2484 -7.2812 -0.6132 24 1 1.2655 -7.8607 0.3372 25 1 2.0773 -7.9112 -1.9470 26 1 3.6251 -7.5355 -0.1181 27 6 1.8971 -2.1573 1.2212 28 1 -0.3634 0.0920 -1.0235 29 1 -0.3634 -0.9323 0.4322 30 1 -0.3633 0.8405 0.5913 31 1 -0.1532 3.5472 -0.9252 32 1 1.4525 3.6354 -1.6883 33 1 0.4911 2.1422 -1.8080 34 1 0.7099 1.9765 2.2109 35 1 -0.2888 3.2857 1.3802 36 1 -0.3354 4.8871 0.6135 37 1 -0.5596 7.2634 0.0083 38 1 1.4488 8.6682 -0.2291 39 1 3.6807 7.6989 0.1481 40 1 3.9044 5.3246 0.7612 41 1 3.2614 -1.1452 -0.2012 42 1 0.4569 -2.2281 -0.9798 43 1 2.0532 -2.5940 -1.7697 44 1 1.5947 -5.4701 -2.7058 45 1 2.7161 -2.2098 1.9386 46 1 0.9346 -1.9504 1.6891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044032831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:15 Heat of formation + Delta-G solvation = 80.763664 kcal Electronic energy + Delta-G solvation = -25898.827856 eV Core-core repulsion = 22370.440452 eV Total energy + Delta-G solvation = -3528.387404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69839 -39.37501 -37.91803 -36.57718 -34.37296 -31.99923 -31.23212 -30.86182 -28.75681 -27.71543 -26.66100 -24.82129 -24.32936 -23.99884 -22.71235 -21.88132 -20.66940 -19.07488 -18.38575 -17.11698 -16.92591 -16.58224 -16.13535 -15.53750 -15.11562 -14.98270 -14.75764 -14.32406 -14.06684 -13.82127 -13.63963 -13.43103 -13.00939 -12.79016 -12.63716 -12.36475 -12.30719 -12.12303 -12.00617 -11.77519 -11.54818 -11.37589 -11.30313 -11.17600 -10.90499 -10.73775 -10.65276 -10.39392 -10.14773 -10.06974 -9.57480 -9.36670 -9.11843 -8.82133 -8.73281 -8.12932 -6.93220 -5.80276 -3.13435 1.09025 1.19744 2.81153 3.13067 3.38405 3.41657 3.43770 3.45735 3.79935 4.30264 4.45049 4.49201 4.58917 4.67094 4.77226 4.84921 4.89368 5.02290 5.18668 5.26051 5.37201 5.41338 5.43679 5.46977 5.50496 5.60602 5.62912 5.68344 5.76777 5.80394 5.83001 5.90129 5.92141 6.03189 6.11375 6.18412 6.27231 6.30645 6.41787 6.45206 6.56271 6.78437 6.79264 7.17910 7.33264 7.50502 7.77527 7.93809 8.46292 9.00701 9.66699 10.53693 11.36804 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041416 B = 0.002469 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.909624 B =11335.629541 C =11451.124465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.593 5.593 3 C 0.546 3.454 4 O -0.541 6.541 5 C -0.133 4.133 6 C -0.108 4.108 7 C -0.157 4.157 8 C -0.088 4.088 9 H 0.118 0.882 10 C -0.044 4.044 11 C -0.118 4.118 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.119 4.119 15 C -0.109 4.109 16 C 0.089 3.911 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.108 3.892 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.255 0.745 45 H 0.046 0.954 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 24.125 4.547 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.325 5.325 3 C 0.333 3.667 4 O -0.418 6.418 5 C -0.137 4.137 6 C -0.165 4.165 7 C -0.194 4.194 8 C -0.106 4.106 9 H 0.136 0.864 10 C -0.044 4.044 11 C -0.135 4.135 12 C -0.138 4.138 13 C -0.145 4.145 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.014 4.014 17 C 0.032 3.968 18 N -0.332 5.332 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.619 23.742 4.353 24.576 hybrid contribution -0.070 -1.094 0.027 1.097 sum -4.689 22.648 4.381 23.540 Atomic orbital electron populations 1.21845 0.79833 1.03253 1.01772 1.47956 1.06990 1.05858 1.71669 1.19488 0.87107 0.83925 0.76222 1.90679 1.14173 1.87108 1.49833 1.21517 1.03430 0.94958 0.93772 1.21305 1.00041 1.01147 0.94033 1.23388 0.96121 1.02569 0.97316 1.21193 0.98958 0.88800 1.01652 0.86358 1.19069 0.93331 0.93192 0.98771 1.21089 0.97032 0.95298 1.00130 1.21107 0.98597 0.93953 1.00112 1.21142 0.92763 0.99802 1.00777 1.21136 0.97532 0.95218 0.99778 1.21042 0.98437 0.93748 0.99488 1.24058 0.98083 0.79877 0.99401 1.22623 0.96561 0.83579 0.94080 1.45648 1.81110 1.02082 1.04392 1.18941 1.41154 0.80176 0.94871 0.90099 1.24809 1.01805 0.98299 0.95430 1.69805 1.53889 1.34343 0.98708 0.86161 0.78112 0.84557 0.76692 1.21136 1.21507 1.20973 1.22972 0.98064 0.87277 0.93558 0.92657 0.90318 0.91264 0.91449 0.91605 0.91532 0.87732 0.87508 0.85838 0.86153 0.86303 0.86099 0.85847 0.86739 0.95007 0.90540 0.93475 0.93580 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 8.58 59.85 0.51 1.50 16 2 N -0.59 -9.69 3.09 -175.76 -0.54 -10.23 16 3 C 0.55 8.93 6.77 -10.99 -0.07 8.86 16 4 O -0.54 -11.00 16.49 5.55 0.09 -10.91 16 5 C -0.13 -1.60 1.45 -155.62 -0.23 -1.82 16 6 C -0.11 -1.13 8.35 37.16 0.31 -0.82 16 7 C -0.16 -1.48 7.33 -26.73 -0.20 -1.68 16 8 C -0.09 -0.97 5.67 -91.74 -0.52 -1.49 16 9 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 10 C -0.04 -0.44 4.97 -104.62 -0.52 -0.96 16 11 C -0.12 -1.02 7.87 -39.59 -0.31 -1.33 16 12 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 13 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 14 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 15 C -0.11 -1.09 9.74 -39.58 -0.39 -1.48 16 16 C 0.09 1.80 4.41 -70.16 -0.31 1.49 16 17 C 0.16 3.71 6.90 -2.97 -0.02 3.69 16 18 N -0.61 -15.65 3.70 -178.12 -0.66 -16.30 16 19 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.30 11.38 55.49 0.63 -26.67 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.11 2.26 8.44 -2.98 -0.03 2.24 16 28 H 0.05 0.67 7.98 -51.93 -0.41 0.26 16 29 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 30 H 0.07 0.70 5.41 -51.93 -0.28 0.42 16 31 H 0.07 0.55 6.21 -51.93 -0.32 0.23 16 32 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 33 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.11 0.77 6.07 -51.93 -0.32 0.46 16 36 H 0.12 0.89 5.19 -52.48 -0.27 0.61 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.11 2.54 7.22 -51.93 -0.38 2.17 16 42 H 0.03 0.73 6.59 -51.93 -0.34 0.39 16 43 H 0.08 2.03 7.15 -51.93 -0.37 1.66 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.68 7.06 -51.93 -0.37 0.31 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -33.13 365.86 -9.90 -43.04 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.70 Total: 1.17 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.22 Total: -2.74 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.57 Total: -53.20 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.13 -9.90 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044032831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.799 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds