Wall clock time and date at job start Tue Mar 31 2020 11:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00180 * 2 1 4 4 O 1.21283 * 120.00063 * 185.37032 * 3 2 1 5 5 C 1.50703 * 120.00024 * 5.36765 * 3 2 1 6 6 C 1.53002 * 115.55998 * 279.80988 * 5 3 2 7 7 C 1.52995 * 117.50128 * 65.49977 * 5 3 2 8 8 C 1.52998 * 60.03120 * 107.50283 * 7 5 3 9 9 H 1.08998 * 117.50050 * 252.49566 * 8 7 5 10 10 C 1.50700 * 117.49904 * 107.50596 * 8 7 5 11 11 C 1.38233 * 120.00176 * 351.11795 * 10 8 7 12 12 C 1.38232 * 120.00451 * 179.79587 * 11 10 8 13 13 C 1.38236 * 119.99649 * 0.45352 * 12 11 10 14 14 C 1.38239 * 120.00060 * 359.77524 * 13 12 11 15 15 C 1.38229 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.46497 * 119.99412 * 179.97438 * 2 1 3 17 17 C 1.53946 * 113.74189 * 36.68139 * 16 2 1 18 18 N 1.47583 * 86.11300 * 222.03957 * 17 16 2 19 19 C 1.36937 * 134.49301 * 204.63221 * 18 17 16 20 20 H 1.07998 * 120.00162 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00287 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46929 * 60.00110 * 23 21 19 25 25 H 1.48501 * 109.46981 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47023 * 299.99614 * 23 21 19 27 27 C 1.47582 * 91.01491 * 24.64071 * 18 17 16 28 28 H 1.09001 * 109.47254 * 84.86437 * 1 2 3 29 29 H 1.08994 * 109.47476 * 204.87249 * 1 2 3 30 30 H 1.09000 * 109.47146 * 324.87115 * 1 2 3 31 31 H 1.09006 * 109.47154 * 149.19086 * 6 5 3 32 32 H 1.08999 * 109.47199 * 269.18708 * 6 5 3 33 33 H 1.09002 * 109.47301 * 29.18685 * 6 5 3 34 34 H 1.09002 * 117.49959 * 0.02562 * 7 5 3 35 35 H 1.08994 * 117.50123 * 215.00185 * 7 5 3 36 36 H 1.08003 * 119.99580 * 359.97438 * 11 10 8 37 37 H 1.07998 * 120.00195 * 180.25353 * 12 11 10 38 38 H 1.08008 * 119.99952 * 179.79747 * 13 12 11 39 39 H 1.07998 * 120.00133 * 180.02562 * 14 13 12 40 40 H 1.08006 * 119.99888 * 179.97438 * 15 14 13 41 41 H 1.09004 * 112.94050 * 168.40671 * 16 2 1 42 42 H 1.08993 * 113.77191 * 336.34133 * 17 16 2 43 43 H 1.08998 * 113.76991 * 107.74242 * 17 16 2 44 44 H 0.97004 * 120.00554 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.76756 * 221.05557 * 27 18 17 46 46 H 1.08998 * 113.87327 * 89.67386 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3477 1.1694 -0.0983 5 6 1.3904 2.4694 0.1221 6 6 0.7491 2.9856 -1.1676 7 6 0.6532 2.7402 1.4351 8 6 1.9347 3.5084 1.1056 9 1 2.8341 3.2500 1.6645 10 6 1.7979 4.9614 0.7300 11 6 0.5452 5.5044 0.5137 12 6 0.4193 6.8382 0.1733 13 6 1.5468 7.6268 0.0401 14 6 2.7999 7.0827 0.2518 15 6 2.9254 5.7499 0.5962 16 6 2.1974 -1.2688 0.0006 17 6 1.5285 -2.3709 -0.8407 18 7 1.8680 -3.2837 0.2681 19 6 2.0734 -4.6336 0.3713 20 1 2.3187 -5.0710 1.3278 21 6 1.9675 -5.4398 -0.7538 22 7 1.6691 -4.9067 -1.9196 23 14 2.2484 -7.2812 -0.6132 24 1 1.2655 -7.8607 0.3372 25 1 2.0773 -7.9112 -1.9470 26 1 3.6251 -7.5355 -0.1181 27 6 1.8971 -2.1573 1.2212 28 1 -0.3634 0.0920 -1.0235 29 1 -0.3634 -0.9323 0.4322 30 1 -0.3633 0.8405 0.5913 31 1 -0.1532 3.5472 -0.9252 32 1 1.4525 3.6354 -1.6883 33 1 0.4911 2.1422 -1.8080 34 1 0.7099 1.9765 2.2109 35 1 -0.2888 3.2857 1.3802 36 1 -0.3354 4.8871 0.6135 37 1 -0.5596 7.2634 0.0083 38 1 1.4488 8.6682 -0.2291 39 1 3.6807 7.6989 0.1481 40 1 3.9044 5.3246 0.7612 41 1 3.2614 -1.1452 -0.2012 42 1 0.4569 -2.2281 -0.9798 43 1 2.0532 -2.5940 -1.7697 44 1 1.5947 -5.4701 -2.7058 45 1 2.7161 -2.2098 1.9386 46 1 0.9346 -1.9504 1.6891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044032831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:14 Heat of formation + Delta-G solvation = 62.051263 kcal Electronic energy + Delta-G solvation = -25899.639286 eV Core-core repulsion = 22370.440452 eV Total energy + Delta-G solvation = -3529.198835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79164 -40.44791 -39.34290 -37.65024 -35.88289 -34.00075 -31.89853 -31.57075 -29.76038 -29.41152 -27.92275 -26.64152 -25.83706 -24.74174 -23.82241 -22.96300 -21.54939 -20.54902 -19.67866 -18.84914 -17.97080 -17.72247 -17.45780 -16.94851 -16.46853 -15.99587 -15.86907 -15.70581 -15.34120 -14.97819 -14.55442 -14.34916 -14.20046 -13.86710 -13.77075 -13.61377 -13.35453 -13.31078 -13.18449 -13.12535 -13.02617 -12.81835 -12.80272 -12.59035 -12.13839 -12.08472 -12.00900 -11.83817 -11.57260 -11.43174 -11.13993 -10.88921 -10.62303 -9.75005 -9.57954 -9.42970 -8.98918 -7.94743 -5.29587 0.43103 0.56471 1.44474 1.48504 1.52834 1.54598 1.90932 2.46523 2.57970 3.04727 3.23483 3.35010 3.45796 3.61427 3.70929 3.82212 3.92702 4.04385 4.19933 4.22684 4.27159 4.33642 4.35965 4.44219 4.61760 4.68273 4.69986 4.72730 4.75300 4.79687 4.81699 4.90726 4.91140 4.97044 5.08403 5.16717 5.18826 5.21192 5.22364 5.26821 5.43735 5.64482 5.67695 5.69169 5.77399 5.86791 6.17469 6.45129 6.86466 7.14056 7.54927 8.48208 9.22111 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041416 B = 0.002469 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.909624 B =11335.629541 C =11451.124465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.592 5.592 3 C 0.542 3.458 4 O -0.591 6.591 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.130 4.130 8 C -0.093 4.093 9 H 0.096 0.904 10 C -0.057 4.057 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.130 4.130 14 C -0.127 4.127 15 C -0.133 4.133 16 C 0.112 3.888 17 C 0.163 3.837 18 N -0.636 5.636 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.983 3.017 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.278 1.278 27 C 0.117 3.883 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.250 0.750 45 H 0.049 0.951 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 25.907 5.692 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.322 5.322 3 C 0.331 3.669 4 O -0.471 6.471 5 C -0.146 4.146 6 C -0.159 4.159 7 C -0.166 4.166 8 C -0.112 4.112 9 H 0.114 0.886 10 C -0.057 4.057 11 C -0.137 4.137 12 C -0.139 4.139 13 C -0.148 4.148 14 C -0.145 4.145 15 C -0.151 4.151 16 C 0.007 3.993 17 C 0.037 3.963 18 N -0.364 5.364 19 C -0.366 4.366 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.222 25.559 5.533 27.130 hybrid contribution 0.775 -1.535 -0.306 1.746 sum -6.447 24.025 5.226 25.418 Atomic orbital electron populations 1.22082 0.77214 1.04383 1.03177 1.47930 1.08411 1.04471 1.71425 1.20306 0.86764 0.85183 0.74655 1.90653 1.16668 1.87908 1.51897 1.21393 1.04699 0.92696 0.95833 1.21305 1.00792 1.00934 0.92885 1.23574 0.96609 1.01639 0.94823 1.21146 0.99306 0.89545 1.01182 0.88626 1.19070 0.94203 0.92499 0.99968 1.21304 0.96796 0.95975 0.99578 1.21468 0.99746 0.93670 0.99009 1.21486 0.92426 1.01014 0.99903 1.21356 0.98770 0.94797 0.99614 1.21157 0.98346 0.94787 1.00831 1.23311 0.96688 0.81361 0.97988 1.22475 0.96654 0.84665 0.92524 1.45962 1.81516 1.02375 1.06509 1.19352 1.40425 0.81628 0.95172 0.89566 1.25691 1.02235 1.02828 0.95149 1.70000 1.55371 1.35590 0.99204 0.85087 0.78272 0.79095 0.76471 1.19892 1.21929 1.20357 1.23059 0.99331 0.85272 0.93208 0.91652 0.91103 0.87616 0.88229 0.92914 0.92108 0.87549 0.84066 0.83751 0.83566 0.84123 0.84851 0.86937 0.89492 0.94122 0.94543 0.94080 0.93274 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 8.58 127.77 1.10 2.81 16 2 N -0.59 -19.06 3.09 -828.37 -2.56 -21.62 16 3 C 0.54 17.78 6.77 87.66 0.59 18.37 16 4 O -0.59 -25.15 16.49 -3.04 -0.05 -25.20 16 5 C -0.14 -3.20 1.45 -52.90 -0.08 -3.28 16 6 C -0.10 -1.90 8.35 71.98 0.60 -1.30 16 7 C -0.13 -2.01 7.33 30.59 0.22 -1.79 16 8 C -0.09 -1.97 5.67 -11.52 -0.07 -2.04 16 9 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 10 C -0.06 -1.09 4.97 -19.87 -0.10 -1.18 16 11 C -0.12 -1.66 7.87 22.27 0.18 -1.49 16 12 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 13 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 14 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 15 C -0.13 -2.65 9.74 22.27 0.22 -2.44 16 16 C 0.11 4.61 4.41 46.75 0.21 4.82 16 17 C 0.16 7.91 6.90 86.48 0.60 8.50 16 18 N -0.64 -33.38 3.70 -717.45 -2.65 -36.04 16 19 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 20 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 21 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 22 N -0.95 -58.10 11.38 21.65 0.25 -57.85 16 23 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.12 4.86 8.44 86.48 0.73 5.59 16 28 H 0.06 1.44 7.98 -2.39 -0.02 1.42 16 29 H 0.07 1.81 6.17 -2.39 -0.01 1.80 16 30 H 0.11 1.70 5.41 -2.39 -0.01 1.69 16 31 H 0.10 1.19 6.21 -2.38 -0.01 1.17 16 32 H 0.05 1.12 8.02 -2.39 -0.02 1.10 16 33 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 34 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 35 H 0.14 1.24 6.07 -2.39 -0.01 1.23 16 36 H 0.14 1.32 5.19 -2.91 -0.02 1.30 16 37 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.11 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.09 4.09 7.22 -2.38 -0.02 4.08 16 42 H 0.04 1.89 6.59 -2.39 -0.02 1.88 16 43 H 0.04 2.04 7.15 -2.39 -0.02 2.03 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.30 7.06 -2.39 -0.02 2.28 16 Total: -1.00 -75.29 365.86 4.23 -71.07 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.98 Total: 15.59 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 6.24 Total: 6.00 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.97 Total: -115.51 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -75.29 4.23 -71.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044032831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.118 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds