Wall clock time and date at job start Tue Mar 31 2020 11:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46057 * 2 1 4 4 C 1.34780 * 119.99629 * 60.02453 * 3 2 1 5 5 O 1.21276 * 120.00209 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99493 * 180.02562 * 4 3 2 7 7 H 1.08993 * 113.12610 * 47.63025 * 6 4 3 8 8 C 1.52884 * 113.98827 * 180.02562 * 6 4 3 9 9 C 1.50759 * 89.76857 * 114.09669 * 8 6 4 10 10 C 1.38229 * 149.34508 * 179.97438 * 9 8 6 11 11 C 1.38179 * 120.12935 * 180.02562 * 10 9 8 12 12 C 1.38241 * 119.74190 * 0.02562 * 11 10 9 13 13 C 1.37976 * 120.17808 * 359.97438 * 12 11 10 14 14 C 1.38363 * 90.24257 * 0.02562 * 9 8 6 15 15 C 1.53042 * 109.44921 * 119.96682 * 2 1 3 16 16 C 1.53195 * 109.31330 * 181.37990 * 15 2 1 17 17 N 1.46925 * 108.77612 * 305.36654 * 16 15 2 18 18 C 1.36938 * 120.62835 * 233.58950 * 17 16 15 19 19 H 1.08002 * 119.99971 * 27.69258 * 18 17 16 20 20 C 1.38811 * 119.99550 * 207.69769 * 18 17 16 21 21 N 1.31611 * 120.00379 * 17.34640 * 20 18 17 22 22 Si 1.86806 * 119.99657 * 197.35320 * 20 18 17 23 23 H 1.48505 * 109.46911 * 60.00028 * 22 20 18 24 24 H 1.48503 * 109.46977 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47063 * 300.00072 * 22 20 18 26 26 C 1.46917 * 118.73911 * 53.60388 * 17 16 15 27 27 C 1.53033 * 109.46143 * 240.02848 * 2 1 3 28 28 H 1.08995 * 109.47219 * 60.00266 * 1 2 3 29 29 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47102 * 299.99629 * 1 2 3 31 31 H 0.96994 * 119.99907 * 240.02939 * 3 2 1 32 32 H 1.09006 * 113.16236 * 358.87340 * 8 6 4 33 33 H 1.09004 * 113.16842 * 229.32389 * 8 6 4 34 34 H 1.08006 * 119.93713 * 0.03756 * 10 9 8 35 35 H 1.07995 * 120.12653 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.90497 * 179.72475 * 12 11 10 37 37 H 1.08008 * 119.83533 * 179.97438 * 13 12 11 38 38 H 1.09007 * 109.49679 * 301.33155 * 15 2 1 39 39 H 1.08995 * 109.49992 * 61.42350 * 15 2 1 40 40 H 1.08999 * 109.58633 * 185.57216 * 16 15 2 41 41 H 1.09003 * 109.58790 * 65.15059 * 16 15 2 42 42 H 0.97003 * 119.99922 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.59011 * 186.60580 * 26 17 16 44 44 H 1.09004 * 109.58789 * 66.18473 * 26 17 16 45 45 H 1.09010 * 109.49920 * 298.57659 * 27 2 1 46 46 H 1.09003 * 109.50140 * 58.64212 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2110 1.0111 5 8 0.9963 1.8139 1.9212 6 6 2.1943 3.6321 1.0108 7 1 2.0498 4.1368 0.0557 8 6 1.7439 4.4504 2.2211 9 6 3.1753 4.5390 2.6861 10 6 4.0994 4.9866 3.6115 11 6 5.4405 4.6965 3.4486 12 6 5.8545 3.9573 2.3563 13 6 4.9330 3.5101 1.4319 14 6 3.5832 3.7989 1.5905 15 6 2.0396 -0.7208 1.2502 16 6 3.5711 -0.6889 1.2645 17 7 4.0677 -1.2492 0.0004 18 6 4.9760 -2.2740 0.0005 19 1 5.0089 -2.9663 0.8288 20 6 5.8545 -2.4228 -1.0639 21 7 6.0604 -1.4211 -1.8923 22 14 6.7444 -4.0451 -1.3205 23 1 5.7495 -5.1289 -1.5223 24 1 7.6179 -3.9465 -2.5175 25 1 7.5728 -4.3496 -0.1263 26 6 3.5714 -0.6890 -1.2639 27 6 2.0398 -0.7208 -1.2499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.1051 3.8901 2.9039 33 1 1.3201 5.4177 1.9511 34 1 3.7725 5.5641 4.4637 35 1 6.1624 5.0458 4.1719 36 1 6.9026 3.7328 2.2240 37 1 5.2626 2.9333 0.5802 38 1 1.6569 -0.2207 2.1399 39 1 1.6973 -1.7556 1.2385 40 1 3.9412 -1.2848 2.0988 41 1 3.9142 0.3406 1.3676 42 1 6.6746 -1.5250 -2.6358 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3405 -1.3671 45 1 1.6976 -1.7558 -1.2382 46 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045542205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:38 Heat of formation + Delta-G solvation = 48.998591 kcal Electronic energy + Delta-G solvation = -27285.199724 eV Core-core repulsion = 23755.434883 eV Total energy + Delta-G solvation = -3529.764841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00864 -39.49504 -37.33599 -35.17870 -34.34474 -32.01069 -30.95570 -30.53654 -29.90742 -27.55592 -27.40767 -25.25238 -24.04617 -22.33898 -22.21502 -21.20578 -20.65973 -19.56847 -18.65880 -17.36767 -16.77035 -16.64799 -15.37464 -15.00226 -14.86880 -14.66276 -14.39684 -14.15534 -13.81611 -13.43149 -13.23157 -13.12730 -12.94593 -12.88968 -12.53657 -12.36647 -12.09927 -11.86647 -11.70440 -11.62228 -11.31984 -11.20550 -10.92697 -10.91554 -10.70536 -10.39623 -10.36877 -10.27376 -9.86340 -9.81985 -9.62821 -9.23372 -8.73498 -8.61253 -8.47674 -8.45201 -6.65916 -5.80041 -3.20522 1.31900 1.46559 2.83381 3.37905 3.43352 3.44944 3.45529 3.84306 4.18789 4.44114 4.49447 4.50000 4.96135 5.10048 5.14589 5.19891 5.31752 5.37274 5.46721 5.54615 5.60071 5.63125 5.68885 5.74728 5.89925 5.98324 6.01077 6.06876 6.14538 6.20442 6.31615 6.35167 6.42631 6.44003 6.53727 6.58471 6.69038 6.72505 6.76170 6.85698 6.98731 7.02941 7.10139 7.29625 7.57713 7.78707 7.91500 8.44564 8.54262 9.21383 9.85019 10.42149 11.28574 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004756 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.000494 B = 5886.066268 C = 7336.304483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.704 5.704 4 C 0.535 3.465 5 O -0.538 6.538 6 C -0.075 4.075 7 H 0.119 0.881 8 C -0.053 4.053 9 C -0.123 4.123 10 C -0.098 4.098 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.081 4.081 14 C -0.119 4.119 15 C -0.143 4.143 16 C 0.152 3.848 17 N -0.590 5.590 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.173 3.827 27 C -0.146 4.146 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.400 0.600 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.089 0.911 44 H 0.015 0.985 45 H 0.071 0.929 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 12.812 4.428 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 N -0.354 5.354 4 C 0.321 3.679 5 O -0.416 6.416 6 C -0.096 4.096 7 H 0.136 0.864 8 C -0.090 4.090 9 C -0.123 4.123 10 C -0.116 4.116 11 C -0.132 4.132 12 C -0.137 4.137 13 C -0.099 4.099 14 C -0.119 4.119 15 C -0.183 4.183 16 C 0.025 3.975 17 N -0.312 5.312 18 C -0.379 4.379 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.047 3.953 27 C -0.186 4.186 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.235 0.765 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.656 12.493 4.929 15.459 hybrid contribution 1.009 -0.733 -0.670 1.416 sum -6.647 11.760 4.259 14.164 Atomic orbital electron populations 1.22222 0.95424 1.01886 1.02285 1.20279 0.92566 0.80111 0.97179 1.46115 1.52524 1.12088 1.24697 1.19766 0.79948 0.86242 0.81983 1.90600 1.38588 1.76624 1.35745 1.21380 0.92340 0.94906 1.00956 0.86366 1.21438 0.92846 0.99742 0.94964 1.21677 0.96973 0.98240 0.95455 1.20108 0.91902 1.01075 0.98504 1.21026 0.95183 0.98934 0.98028 1.20982 0.99574 0.98520 0.94598 1.20699 0.91281 0.98327 0.99555 1.21740 0.92868 0.99785 0.97545 1.22390 0.99039 0.99565 0.97261 1.20818 0.90826 0.96125 0.89700 1.44015 1.48182 1.39649 0.99389 1.19159 1.09709 1.02958 1.06068 0.91853 1.24982 0.97211 0.97390 0.99979 1.70003 1.37874 1.29033 1.18054 0.86396 0.79267 0.83981 0.77304 1.21081 1.21669 1.20946 1.20730 0.86807 0.96998 0.90785 1.22529 1.01486 1.00000 0.94559 0.93349 0.92276 0.90917 0.76465 0.87653 0.89220 0.86485 0.85697 0.85595 0.85825 0.90965 0.91937 0.93322 0.96605 0.93680 0.89293 0.96713 0.91058 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.40 37.16 0.31 -2.11 16 2 C 0.18 3.11 0.66 -131.78 -0.09 3.02 16 3 N -0.70 -11.01 4.10 -47.57 -0.19 -11.20 16 4 C 0.54 8.33 6.82 -10.98 -0.07 8.26 16 5 O -0.54 -9.69 11.94 5.56 0.07 -9.62 16 6 C -0.07 -0.95 4.46 -92.63 -0.41 -1.37 16 7 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.05 -0.62 7.54 -31.56 -0.24 -0.86 16 9 C -0.12 -1.64 7.60 -104.55 -0.79 -2.43 16 10 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 11 C -0.11 -1.35 10.06 -39.60 -0.40 -1.75 16 12 C -0.12 -1.57 10.03 -39.68 -0.40 -1.97 16 13 C -0.08 -1.19 10.05 -39.42 -0.40 -1.59 16 14 C -0.12 -1.70 6.84 -107.60 -0.74 -2.43 16 15 C -0.14 -2.73 4.67 -26.61 -0.12 -2.85 16 16 C 0.15 3.33 6.26 -3.71 -0.02 3.31 16 17 N -0.59 -14.46 2.99 -172.32 -0.52 -14.97 16 18 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 19 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 22 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.17 3.87 5.04 -3.71 -0.02 3.85 16 27 C -0.15 -2.63 4.96 -26.61 -0.13 -2.76 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 31 H 0.40 5.94 7.27 -40.82 -0.30 5.64 16 32 H 0.11 1.36 7.04 -51.93 -0.37 1.00 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 38 H 0.07 1.42 6.20 -51.93 -0.32 1.09 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 41 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 44 H 0.01 0.34 6.94 -51.93 -0.36 -0.02 16 45 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -30.45 359.75 -10.77 -41.22 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.99 Total: 7.72 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.15 Total: -10.20 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.09 Total: -51.03 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.45 -10.77 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045542205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.223 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds